Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010805

Physical Location & Seq

Genomic Coordinates Reverse (-)

18823904 .. 18826992

Gene Structure 3089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1202300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCCACTGAGATGGAGGGATGTACAAGGAAGGAGAAGGAGGCATGTCCACAACTGCTAGATTTGATTCCAAGAGAGAGAGACTGGCTTGTGAGCAGATATATTGAGAGAAGCAGCGGCCATGGAAGCTCCTCCTCAGAGGAGAAGAAGCTTGAGCTTAGGCTTGGCCCTCCAGGTCAAGACTGGTCAATGAAAAGAGAAAGAGATGAGAAGTCTCAGTCCCTTGTCTCTCTTGGATACTTTTCTTCCCCCATGTCCTCCAACCAAACCCAGAAATTTATTTCTTCTTACCAGCAGCAGGCAAAAGTTGCGTCTTTTCTTCACCTACCTGTCACCCCCAACAAAGCGTCACAGCCCTGGTGCACTAAAGCAGTAGACTTGCAGAATGCAGAAAATAAAGGGTTTTCACCAGCCCCTGCAAATACAGCTGTGCTCCCCAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTTGTGGGTTGGCCTCCAATTCGATCATTTAGGAAGAATCTTGCAAGCAACAAAGGCTCATCAAAACCAGCAGTCGAATCCGAAAATGTTGTCCAAATCAAAGATCCTAATGGTAAATCAGTTGAAACCAGCGGAAAGGGTCTGTTTGTGAAAATTAACATGGATGGAGTCCCCATTGGAAGAAAAGTGGACCTCGGTGCTTATGACAGCTACCAAAAGCTCTCCTCCGCTGTCGATGAACTCTTCCGTGGCCTTCTCGCCGCTCAAAGAGAATCCTGTAATGGTGGAACCAAGAACAAGCAAGAGGAAGAGAAAGAAATCACAGGCTTATTGGATGGAAGTGGAGAATACACCCTTGTTTATGAAGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTCCCATGGCACATGTTTGTGTCTACTGTGAAGAGGCTGCGTGTGCTGAAGAGCTCTGAACTTTCTGCACTTCGTCTTCGTAGCAGCAAAGATAAGATGGCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006417 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

326

Amino Acids

35.94

Weight (kDa)

9.08

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	51 - 314	6.6e-67	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51950 AT3G16500 AT3G16500
fragaria_vesca	FvH4_6g32450 FvH4_6g32450
malus_domestica	MD09G1202300.v1.1 MD17G1183500.v1.1
prunus_persica	Prupe.3G058600_v2.0.a1
pyrus_communis	pycom09g11930 pycom17g19260
rosa_chinensis	RchiOBHm_Chr2g0140681
rosa_laevigata	RLG00000019891
rosa_multiflora	Rmu_sc0003342.1_g000011
rosa_roxburghii	Rroxscaffold_2G00104590
rosa_rugosa	Rorug02G0364000
rosa_samantha	Rh2AG415700 Rh2BG425200 Rh2CG401700 Rh2DG435200
rosa_wichuraiana	Rw2G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	734
AccI	GTMKAC	2 cut(s)	375, 893
AciI	CCGC	4 cut(s)	117, 603, 699, 732
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	2 cut(s)	3, 118
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	938
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	2 cut(s)	298, 476
AflIII	ACRYGT	1 cut(s)	882
AgsI	TTSAA	1 cut(s)	596
AjnI	CCWGG	2 cut(s)	172, 356
AluBI	AGCT	7 cut(s)	129, 151, 157, 428, 681, 691, 924
AluI	AGCT	7 cut(s)	129, 151, 157, 428, 681, 691, 924
Alw21I	GWGCWC	3 cut(s)	365, 435, 926
Alw26I	GTCTC	4 cut(s)	75, 219, 232, 843
Alw44I	GTGCAC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	569
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	5 cut(s)	3, 118, 166, 482, 721
ApaLI	GTGCAC	1 cut(s)	361
ApeKI	GCWGC	4 cut(s)	114, 295, 907, 954
ApoI	RAATTY	1 cut(s)	275
ArsI	GACNNNNNNTTYG	4 cut(s)	296, 328, 546, 578
AspS9I	GGNCC	2 cut(s)	167, 661
AsuHPI	GGTGA	3 cut(s)	314, 325, 399
AvaII	GGWCC	1 cut(s)	661
BaeGI	GKGCMC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	926
BbsI	GAAGAC	1 cut(s)	938
Bbv12I	GWGCWC	3 cut(s)	365, 435, 926
BbvI	GCAGC	4 cut(s)	126, 307, 894, 966
BccI	CCATC	4 cut(s)	7, 629, 800, 961
BciT130I	CCWGG	2 cut(s)	174, 358
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	4 cut(s)	75, 219, 232, 843
BfaI	CTAG	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	6 cut(s)	115, 118, 296, 732, 908, 955
BlsI	GCNGC	6 cut(s)	116, 119, 297, 733, 909, 956
Bme1390I	CCNGG	2 cut(s)	174, 358
Bme18I	GGWCC	1 cut(s)	661
BmgT120I	GGNCC	2 cut(s)	167, 661
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	2 cut(s)	174, 358
BmsI	GCATC	1 cut(s)	846
BpiI	GAAGAC	1 cut(s)	938
BpmI	CTGGAG	2 cut(s)	156, 453
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	173
BsaJI	CCNNGG	5 cut(s)	121, 356, 664, 718, 875
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 476
Bse1I	ACTGG	3 cut(s)	89, 188, 470
BseBI	CCWGG	2 cut(s)	174, 358
BseDI	CCNNGG	5 cut(s)	121, 356, 664, 718, 875
BseGI	GGATG	5 cut(s)	26, 640, 811, 861, 874
BseLI	CCNNNNNNNGG	2 cut(s)	298, 476
BseMII	CTCAG	3 cut(s)	150, 230, 461
BseNI	ACTGG	3 cut(s)	89, 188, 470
BseRI	GAGGAG	4 cut(s)	121, 124, 155, 685
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	4 cut(s)	126, 307, 894, 966
BsgI	GTGCAG	1 cut(s)	921
BshFI	GGCC	5 cut(s)	5, 120, 168, 484, 723
BsiHKAI	GWGCWC	3 cut(s)	365, 435, 926
BslFI	GGGAC	3 cut(s)	205, 626, 857
BslI	CCNNNNNNNGG	2 cut(s)	298, 476
BsmAI	GTCTC	4 cut(s)	75, 219, 232, 843
BsmFI	GGGAC	3 cut(s)	205, 626, 857
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	5 cut(s)	5, 120, 168, 484, 723
Bsp1286I	GDGCHC	3 cut(s)	365, 435, 926
Bsp1407I	TGTACA	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	494, 574
Bsp19I	CCATGG	2 cut(s)	121, 875
BspACI	CCGC	4 cut(s)	117, 603, 699, 732
BspANI	GGCC	5 cut(s)	5, 120, 168, 484, 723
BspCNI	CTCAG	3 cut(s)	149, 229, 460
BspLI	GGNNCC	1 cut(s)	760
BspPI	GGATC	1 cut(s)	569
BspQI	GCTCTTC	1 cut(s)	914
BsrBI	CCGCTC	1 cut(s)	734
BsrGI	TGTACA	1 cut(s)	23
BsrI	ACTGG	3 cut(s)	89, 188, 470
BssECI	CCNNGG	5 cut(s)	121, 356, 664, 718, 875
BssMI	GATC	2 cut(s)	494, 574
BssT1I	CCWWGG	2 cut(s)	121, 875
Bst2UI	CCWGG	2 cut(s)	174, 358
Bst4CI	ACNGT	1 cut(s)	898
Bst6I	CTCTTC	4 cut(s)	719, 774, 896, 914
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstAUI	TGTACA	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	300, 517
BstDEI	CTNAG	5 cut(s)	9, 136, 158, 216, 447
BstDSI	CCRYGG	3 cut(s)	121, 718, 875
BstF5I	GGATG	5 cut(s)	26, 640, 811, 861, 874
BstKTI	GATC	2 cut(s)	497, 577
BstMAI	GTCTC	4 cut(s)	75, 219, 232, 843
BstMBI	GATC	2 cut(s)	494, 574
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 308, 425, 525, 913
BstNI	CCWGG	2 cut(s)	174, 358
BstNSI	RCATGY	2 cut(s)	48, 886
BstSCI	CCNGG	2 cut(s)	172, 356
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	4 cut(s)	126, 307, 894, 966
BstV2I	GAAGAC	1 cut(s)	938
BstX2I	RGATCY	1 cut(s)	574
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	574
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	5 cut(s)	5, 120, 168, 484, 723
BtgI	CCRYGG	3 cut(s)	121, 718, 875
BtsCI	GGATG	5 cut(s)	26, 640, 811, 861, 874
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	2 cut(s)	300, 517
CaiI	CAGNNNCTG	1 cut(s)	416
Cfr13I	GGNCC	2 cut(s)	167, 661
CseI	GACGC	2 cut(s)	300, 336
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	6 cut(s)	45, 122, 253, 631, 876, 883
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	5 cut(s)	9, 136, 158, 216, 447
DpnI	GATC	2 cut(s)	496, 576
DpnII	GATC	2 cut(s)	494, 574
EaeI	YGGCCR	2 cut(s)	3, 118
Eam1104I	CTCTTC	4 cut(s)	719, 774, 896, 914
EarI	CTCTTC	4 cut(s)	719, 774, 896, 914
Ecl136II	GAGCTC	1 cut(s)	924
Eco130I	CCWWGG	2 cut(s)	121, 875
Eco24I	GRGCYC	1 cut(s)	926
Eco47I	GGWCC	1 cut(s)	661
Eco53kI	GAGCTC	1 cut(s)	924
Eco57I	CTGAAG	1 cut(s)	938
EcoICRI	GAGCTC	1 cut(s)	924
EcoRII	CCWGG	2 cut(s)	172, 356
EcoT14I	CCWWGG	2 cut(s)	121, 875
EcoT38I	GRGCYC	1 cut(s)	926
ErhI	CCWWGG	2 cut(s)	121, 875
FaeI	CATG	6 cut(s)	48, 125, 256, 634, 879, 886
FaiI	YATR	9 cut(s)	46, 102, 123, 254, 632, 675, 834, 877, 884
FaqI	GGGAC	3 cut(s)	205, 626, 857
FatI	CATG	6 cut(s)	44, 121, 252, 630, 875, 882
FblI	GTMKAC	2 cut(s)	375, 893
Fnu4HI	GCNGC	6 cut(s)	115, 118, 296, 732, 908, 955
FokI	GGATG	5 cut(s)	33, 647, 818, 868, 881
FriOI	GRGCYC	1 cut(s)	926
Fsp4HI	GCNGC	6 cut(s)	115, 118, 296, 732, 908, 955
FspBI	CTAG	1 cut(s)	59
GluI	GCNGC	6 cut(s)	115, 118, 296, 732, 908, 955
GsuI	CTGGAG	2 cut(s)	156, 453
HaeIII	GGCC	5 cut(s)	5, 120, 168, 484, 723
HgaI	GACGC	2 cut(s)	300, 336
Hin1II	CATG	6 cut(s)	48, 125, 256, 634, 879, 886
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	5 cut(s)	67, 508, 548, 639, 743
HphI	GGTGA	3 cut(s)	314, 325, 399
Hpy166II	GTNNAC	5 cut(s)	50, 363, 376, 661, 894
Hpy188I	TCNGA	4 cut(s)	139, 450, 553, 928
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	5 cut(s)	50, 363, 376, 661, 894
HpyAV	CCTTC	4 cut(s)	25, 31, 734, 839
HpyCH4III	ACNGT	1 cut(s)	898
HpyCH4V	TGCA	6 cut(s)	363, 382, 389, 419, 515, 938
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 308, 425, 525, 913
HpyF3I	CTNAG	5 cut(s)	9, 136, 158, 216, 447
Hsp92II	CATG	6 cut(s)	48, 125, 256, 634, 879, 886
Kzo9I	GATC	2 cut(s)	494, 574
LguI	GCTCTTC	1 cut(s)	914
LmnI	GCTCC	4 cut(s)	134, 438, 466, 472
Lsp1109I	GCAGC	4 cut(s)	126, 307, 894, 966
LweI	GCATC	1 cut(s)	846
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	331, 348
MalI	GATC	2 cut(s)	496, 576
MbiI	CCGCTC	1 cut(s)	734
MboI	GATC	2 cut(s)	494, 574
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	3 cut(s)	365, 435, 926
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	275, 489, 624
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	648
MmeI	TCCRAC	1 cut(s)	285
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	627
MslI	CAYNNNNRTG	2 cut(s)	11, 887
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	4 cut(s)	117, 428, 603, 701
MspR9I	CCNGG	2 cut(s)	174, 358
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	2 cut(s)	174, 358
MwoI	GCNNNNNNNGC	5 cut(s)	126, 308, 425, 525, 913
NcoI	CCATGG	2 cut(s)	121, 875
NdeII	GATC	2 cut(s)	494, 574
NlaIII	CATG	6 cut(s)	48, 125, 256, 634, 879, 886
NlaIV	GGNNCC	1 cut(s)	760
NmuCI	GTSAC	2 cut(s)	331, 348
NspI	RCATGY	2 cut(s)	48, 886
PciI	ACATGT	1 cut(s)	882
PciSI	GCTCTTC	1 cut(s)	914
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	4 cut(s)	67, 508, 548, 743
PkrI	GCNGC	6 cut(s)	116, 119, 297, 733, 909, 956
PleI	GAGTC	1 cut(s)	647
PpsI	GAGTC	1 cut(s)	647
PscI	ACATGT	1 cut(s)	882
Psp124BI	GAGCTC	1 cut(s)	926
Psp6I	CCWGG	2 cut(s)	172, 356
PspGI	CCWGG	2 cut(s)	172, 356
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	2 cut(s)	167, 661
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	574
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	2 cut(s)	11, 887
SacI	GAGCTC	1 cut(s)	926
SapI	GCTCTTC	1 cut(s)	914
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	6 cut(s)	115, 118, 296, 732, 908, 955
Sau3AI	GATC	2 cut(s)	494, 574
Sau96I	GGNCC	2 cut(s)	167, 661
SchI	GAGTC	1 cut(s)	648
ScrFI	CCNGG	2 cut(s)	174, 358
SduI	GDGCHC	3 cut(s)	365, 435, 926
SfaNI	GCATC	1 cut(s)	846
SinI	GGWCC	1 cut(s)	661
SmiMI	CAYNNNNRTG	2 cut(s)	11, 887
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	275, 489, 624
SsiI	CCGC	4 cut(s)	117, 603, 699, 732
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	926
StyD4I	CCNGG	2 cut(s)	172, 356
StyI	CCWWGG	2 cut(s)	121, 875
TaaI	ACNGT	1 cut(s)	898
TaqI	TCGA	3 cut(s)	493, 546, 705
TasI	AATT	3 cut(s)	275, 489, 624
TatI	WGTACW	1 cut(s)	23
TauI	GCSGC	2 cut(s)	120, 734
TfiI	GAWTC	4 cut(s)	67, 508, 548, 743
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	2 cut(s)	331, 348
TseI	GCWGC	4 cut(s)	114, 295, 907, 954
Tsp45I	GTSAC	2 cut(s)	331, 348
TspDTI	ATGAA	4 cut(s)	206, 723, 849, 858
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	661
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	2 cut(s)	48, 886
XcmI	CCANNNNNNNNNTGG	2 cut(s)	180, 477
XmiI	GTMKAC	2 cut(s)	375, 893
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.