Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Reverse (-)

19489794 .. 19491650

Gene Structure 1857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCAACGAACACTGAATCTTCTTCTTATTCTTCTCTTCCTAGTCAAAGGCTTTTGGGTAAAGTGGCATTGATCACTGGAGGAGCCACAGGGATAGGTGAGAGCATTGTTCGTCTGTTCCACAAGCACGGTGCCAAAGTCTGCATTGTTGATCTGCAAGATGATCTCGGAGGTGAGGTGTGTAAAAGTCTGCTTCGTGGTGAGTCCAAGGAGACGGCTTTTTTCATCCATGGCGATGTTAGAGTGGAAGATGACATTAGCAATGCGGTTGACTTTGCAGTCAAAAATTTTGGGACGCTTGATATACTTATCAACAATGCAGGATTATGTGGAGCACCGTGCCCTGATATTCGTAATTATAGTTTGAGTGAGTTCGAGATGACCTTTGATGTGAATGTGAAAGGAGCTTTTCTAAGCATGAAACATGCAGCTCGTGTAATGATACCGGAGAAGAAAGGGTCGATAGTTTCCTTATGTAGTGTGGGAGGTGTTGTGGGAGGCGTTGGTCCACATTCTTATGTTGGTTCCAAGCATGCTGTTCTAGGCTTGACTAGGAGTGTTGCAGCGGAGCTTGGACAGCACGGGATACGTGTGAACTGTGTTTCGCCTTACGCGGTTGCAACTAAACTCGCTTTGGCTCATTTGCCGGAGGAAGAAAGAACGGAGGATGCATTTGTTGGTTTCAGGAATTTTGCTGCTGCAAACGCGAATCTAAAAGGGGTGGAACTGACGGTTGATGATGTAGCGAACGCTGTTCTGTTTTTGGCTAGCGATGACTCGCGGTACATAAGCGGAGATAATTTGATGATTGATGGAGGATTCACTTGCACTAACCACTCCTTTAAAGTCTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

285

Amino Acids

30.27

Weight (kDa)

5.84

Isoelectric Point (pI)

24.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	21 - 211	2.7e-51	short chain dehydrogenase
adh_short_C2	PF13561	29 - 275	3.2e-59	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	131
AccII	CGCG	3 cut(s)	614, 707, 781
AciI	CCGC	5 cut(s)	266, 566, 614, 781, 792
AcsI	RAATTY	2 cut(s)	286, 688
AcuI	CTGAAG	1 cut(s)	835
AfaI	GTAC	1 cut(s)	785
AflIII	ACRYGT	1 cut(s)	589
AluBI	AGCT	3 cut(s)	407, 431, 571
AluI	AGCT	3 cut(s)	407, 431, 571
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	206
ApeKI	GCWGC	4 cut(s)	428, 563, 695, 698
ApoI	RAATTY	2 cut(s)	286, 688
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	3 cut(s)	110, 185, 212
AsuNHI	GCTAGC	1 cut(s)	767
AvaII	GGWCC	1 cut(s)	506
BaeGI	GKGCMC	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	131
BauI	CACGAG	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	841
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	4 cut(s)	440, 575, 682, 685
BccI	CCATC	1 cut(s)	806
BceAI	ACGGC	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	579
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	4 cut(s)	42, 542, 552, 768
BfuI	GTATCC	1 cut(s)	579
BisI	GCNGC	4 cut(s)	429, 564, 696, 699
BlsI	GCNGC	4 cut(s)	430, 565, 697, 700
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	3 cut(s)	85, 133, 526
BmsI	GCATC	1 cut(s)	658
BmtI	GCTAGC	1 cut(s)	771
BpiI	GAAGAC	1 cut(s)	841
BpmI	CTGGAG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	207, 229
BsaWI	WCCGGW	1 cut(s)	445
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 477, 507
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	207, 229
BseGI	GGATG	2 cut(s)	225, 673
BseMI	GCAATG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	4 cut(s)	440, 575, 682, 685
Bsh1236I	CGCG	3 cut(s)	614, 707, 781
BshNI	GGYRCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	2 cut(s)	446, 647
BslFI	GGGAC	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	206
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	337, 344
Bsp143I	GATC	3 cut(s)	72, 151, 163
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	5 cut(s)	266, 566, 614, 781, 792
BspFNI	CGCG	3 cut(s)	614, 707, 781
BspLI	GGNNCC	3 cut(s)	85, 133, 526
BspOI	GCTAGC	1 cut(s)	771
BspT107I	GGYRCC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	207, 229
BssMI	GATC	3 cut(s)	72, 151, 163
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	2 cut(s)	207, 229
Bst2BI	CACGAG	1 cut(s)	432
Bst4CI	ACNGT	4 cut(s)	131, 339, 599, 733
Bst6I	CTCTTC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	534, 769
BstDEI	CTNAG	1 cut(s)	413
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	225, 673
BstFNI	CGCG	3 cut(s)	614, 707, 781
BstKTI	GATC	3 cut(s)	75, 154, 166
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	3 cut(s)	72, 151, 163
BstMWI	GCNNNNNNNGC	2 cut(s)	577, 704
BstNSI	RCATGY	2 cut(s)	428, 536
BstSLI	GKGCMC	1 cut(s)	344
BstUI	CGCG	3 cut(s)	614, 707, 781
BstV1I	GCAGC	4 cut(s)	440, 575, 682, 685
BstV2I	GAAGAC	1 cut(s)	841
BsuI	GTATCC	1 cut(s)	579
BtgI	CCRYGG	1 cut(s)	229
BtgZI	GCGATG	2 cut(s)	249, 786
BtsCI	GGATG	2 cut(s)	225, 673
BtsIMutI	CAGTG	2 cut(s)	12, 75
Cac8I	GCNNGC	2 cut(s)	534, 769
Cfr13I	GGNCC	1 cut(s)	506
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	784
CviAII	CATG	4 cut(s)	230, 418, 425, 533
CviJI	RGCY	9 cut(s)	52, 86, 218, 407, 431, 546, 571, 638, 767
CviKI_1	RGCY	9 cut(s)	52, 86, 218, 407, 431, 546, 571, 638, 767
CviQI	GTAC	1 cut(s)	784
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	3 cut(s)	74, 153, 165
DpnII	GATC	3 cut(s)	72, 151, 163
DraI	TTTAAA	1 cut(s)	844
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	2 cut(s)	207, 229
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	1 cut(s)	835
EcoT14I	CCWWGG	2 cut(s)	207, 229
EcoT22I	ATGCAT	1 cut(s)	673
ErhI	CCWWGG	2 cut(s)	207, 229
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	4 cut(s)	233, 421, 428, 536
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	4 cut(s)	229, 417, 424, 532
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	429, 564, 696, 699
FokI	GGATG	2 cut(s)	212, 680
Fsp4HI	GCNGC	4 cut(s)	429, 564, 696, 699
FspBI	CTAG	4 cut(s)	42, 542, 552, 768
GluI	GCNGC	4 cut(s)	429, 564, 696, 699
GsuI	CTGGAG	1 cut(s)	99
HapII	CCGG	2 cut(s)	446, 647
HgaI	GACGC	1 cut(s)	304
Hin1II	CATG	4 cut(s)	233, 421, 428, 536
HincII	GTYRAC	2 cut(s)	6, 271
HindII	GTYRAC	2 cut(s)	6, 271
HinfI	GANTC	5 cut(s)	17, 203, 709, 776, 819
HpaII	CCGG	2 cut(s)	446, 647
HphI	GGTGA	3 cut(s)	110, 185, 212
Hpy166II	GTNNAC	4 cut(s)	6, 271, 509, 595
Hpy188I	TCNGA	2 cut(s)	170, 854
Hpy188III	TCNNGA	2 cut(s)	376, 685
Hpy8I	GTNNAC	4 cut(s)	6, 271, 509, 595
HpyCH4III	ACNGT	4 cut(s)	131, 339, 599, 733
HpyCH4IV	ACGT	1 cut(s)	589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	577, 704
HpyF3I	CTNAG	1 cut(s)	413
HpySE526I	ACGT	1 cut(s)	589
Hsp92II	CATG	4 cut(s)	233, 421, 428, 536
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	72, 151, 163
LmnI	GCTCC	4 cut(s)	83, 332, 404, 568
LpnPI	CCDG	7 cut(s)	63, 75, 306, 357, 459, 660, 670
Lsp1109I	GCAGC	4 cut(s)	440, 575, 682, 685
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	4 cut(s)	42, 542, 552, 768
MaeII	ACGT	1 cut(s)	589
MalI	GATC	3 cut(s)	74, 153, 165
MboI	GATC	3 cut(s)	72, 151, 163
MboII	GAAGA	8 cut(s)	12, 15, 24, 29, 260, 463, 665, 841
MhlI	GDGCHC	2 cut(s)	337, 344
MluCI	AATT	4 cut(s)	286, 355, 688, 799
MlyI	GAGTC	2 cut(s)	212, 770
MnlI	CCTC	8 cut(s)	74, 164, 169, 479, 491, 643, 658, 809
Mph1103I	ATGCAT	1 cut(s)	673
MseI	TTAA	1 cut(s)	843
MslI	CAYNNNNRTG	2 cut(s)	234, 516
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	2 cut(s)	446, 647
MvnI	CGCG	3 cut(s)	614, 707, 781
MwoI	GCNNNNNNNGC	2 cut(s)	577, 704
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	3 cut(s)	72, 151, 163
NheI	GCTAGC	1 cut(s)	767
NlaIII	CATG	4 cut(s)	233, 421, 428, 536
NlaIV	GGNNCC	3 cut(s)	85, 133, 526
NsiI	ATGCAT	1 cut(s)	673
NspI	RCATGY	2 cut(s)	428, 536
PaeI	GCATGC	1 cut(s)	536
PfeI	GAWTC	3 cut(s)	17, 709, 819
PkrI	GCNGC	4 cut(s)	430, 565, 697, 700
PleI	GAGTC	2 cut(s)	211, 770
PpsI	GAGTC	2 cut(s)	211, 770
Ppu21I	YACGTR	1 cut(s)	590
PspN4I	GGNNCC	3 cut(s)	85, 133, 526
PspPI	GGNCC	1 cut(s)	506
RsaI	GTAC	1 cut(s)	785
RsaNI	GTAC	1 cut(s)	784
RseI	CAYNNNNRTG	2 cut(s)	234, 516
SaqAI	TTAA	1 cut(s)	843
SatI	GCNGC	4 cut(s)	429, 564, 696, 699
Sau3AI	GATC	3 cut(s)	72, 151, 163
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	2 cut(s)	212, 770
SduI	GDGCHC	2 cut(s)	337, 344
SetI	ASST	9 cut(s)	100, 175, 180, 386, 409, 433, 490, 573, 592
SfaNI	GCATC	1 cut(s)	658
SinI	GGWCC	1 cut(s)	506
SmiMI	CAYNNNNRTG	2 cut(s)	234, 516
SphI	GCATGC	1 cut(s)	536
Sse9I	AATT	4 cut(s)	286, 355, 688, 799
SsiI	CCGC	5 cut(s)	266, 566, 614, 781, 792
SspMI	CTAG	4 cut(s)	42, 542, 552, 768
StyI	CCWWGG	2 cut(s)	207, 229
TaaI	ACNGT	4 cut(s)	131, 339, 599, 733
TaiI	ACGT	1 cut(s)	592
TaqI	TCGA	2 cut(s)	375, 461
TasI	AATT	4 cut(s)	286, 355, 688, 799
TfiI	GAWTC	3 cut(s)	17, 709, 819
Tru1I	TTAA	1 cut(s)	843
Tru9I	TTAA	1 cut(s)	843
TscAI	CASTG	2 cut(s)	19, 82
TseI	GCWGC	4 cut(s)	428, 563, 695, 698
TspDTI	ATGAA	2 cut(s)	214, 434
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	2 cut(s)	19, 82
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	2 cut(s)	286, 688
XceI	RCATGY	2 cut(s)	428, 536
XspI	CTAG	4 cut(s)	42, 542, 552, 768
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.