Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Reverse (-)

3187425 .. 3189718

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G029900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGACTGAAGTGGATTCGGTTCCAAGCCAGAGGTTAGCAGGGAAAGTGGCATTGGTGACTGGTGGAGCCACCGGTATTGGGGAAAGCATTGTGCGCCTATTCCACAAACATGGTGCAAAAGTTTGTTTAGTTGATGTGCAGGACAACCTATCCTTGCAAGTCTGCGAATCCCTCGGTGGTGACCCAAATGTTAGTTATTTCCATTGTGACGTCACAATAGAGGATGATGTCAGCCGTGCAGTTGATTTCACAGTCAATAAATATGGCACACTTGATATCATCGTCAACAACGCTGGGGTGTCAGGCTCACCTTGTCCCGACATCCGCAATGCAGACGTATCCGAGTTTGAGAAGGTATTTGATATTAATGTGAAGGGAGTCTTCCTTGGAATGAAACACGCAGCTAGGATAATGATCCCACTAAAAAAGGGCAGTATAATTTCTCTTTCCAGTGTTTCAAGTGCTTTAGGAGGCTTAGGACCACATGCATACACAGGGTCCAAGCATGCTGTATTGGGGCTCACCAAGAACGTTGCTGCCGAGCTTGGAATTCATGGGATTCGTGTTAACTGTGTTTCTCCTTACGCAGTTGCTACAAATTTGGCTTTGGCTCACTTGCCCGAGGAGGAGAGAACTGAAGATGCCTGGGCAGGTTTCCGTTCGTTTGTAGGGGGAAATGCCAACTTGCAAGGAGTAGAATTGACAGTTGATGATGTAGCTAATGCTGTGCTCTTCTTAGCAAGTGATGAGTCCAAGTATATAAGTGGGGATAATCTCATGATTGATGGGGGCATCACTTGCGTGAATCACTCACTAGGAGTATTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

277

Amino Acids

29.05

Weight (kDa)

5.3

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	641
AciI	CCGC	1 cut(s)	325
AclI	AACGTT	1 cut(s)	531
AclWI	GGATC	1 cut(s)	409
AcsI	RAATTY	2 cut(s)	549, 598
AcuI	CTGAAG	2 cut(s)	27, 657
AcyI	GRCGYC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgeI	ACCGGT	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	459
AjnI	CCWGG	1 cut(s)	644
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AleI	CACNNNNGTG	1 cut(s)	800
AluBI	AGCT	3 cut(s)	404, 544, 719
AluI	AGCT	3 cut(s)	404, 544, 719
Alw21I	GWGCWC	1 cut(s)	732
AlwI	GGATC	1 cut(s)	409
Ama87I	CYCGRG	1 cut(s)	620
ApeKI	GCWGC	2 cut(s)	401, 536
ApoI	RAATTY	2 cut(s)	549, 598
AseI	ATTAAT	1 cut(s)	366
AsiGI	ACCGGT	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	2 cut(s)	479, 498
AsuHPI	GGTGA	4 cut(s)	67, 191, 300, 514
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	479, 498
BanII	GRGCYC	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	732
BbvI	GCAGC	2 cut(s)	413, 523
BccI	CCATC	1 cut(s)	779
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	646
BciVI	GTATCC	1 cut(s)	349
BfaI	CTAG	2 cut(s)	405, 815
BfuAI	ACCTGC	1 cut(s)	641
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	2 cut(s)	402, 537
BlsI	GCNGC	2 cut(s)	403, 538
Bme1390I	CCNGG	1 cut(s)	646
Bme18I	GGWCC	2 cut(s)	479, 498
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	2 cut(s)	479, 498
BmiI	GGNNCC	3 cut(s)	21, 67, 499
BmrFI	CCNGG	1 cut(s)	646
BmsI	GCATC	2 cut(s)	631, 801
BpiI	GAAGAC	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	475
BsaBI	GATNNNNATC	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	4 cut(s)	172, 385, 621, 645
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	64, 450
Bse3DI	GCAATG	1 cut(s)	334
Bse8I	GATNNNNATC	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	646
BseDI	CCNNGG	4 cut(s)	172, 385, 621, 645
BseGI	GGATG	2 cut(s)	229, 321
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMI	GCAATG	1 cut(s)	334
BseNI	ACTGG	2 cut(s)	64, 450
BseRI	GAGGAG	2 cut(s)	638, 641
BseXI	GCAGC	2 cut(s)	413, 523
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	2 cut(s)	158, 258
BshTI	ACCGGT	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	732
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	300
BsoBI	CYCGRG	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	522, 732
Bsp143I	GATC	1 cut(s)	414
BspACI	CCGC	1 cut(s)	325
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	3 cut(s)	21, 67, 499
BspMI	ACCTGC	1 cut(s)	641
BspPI	GGATC	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	737
BsrDI	GCAATG	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	64, 450
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	4 cut(s)	172, 385, 621, 645
BssMI	GATC	1 cut(s)	414
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	385
Bst2UI	CCWGG	1 cut(s)	646
Bst4CI	ACNGT	3 cut(s)	253, 572, 706
Bst6I	CTCTTC	1 cut(s)	737
BstACI	GRCGYC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	798
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	475, 736
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	229, 321
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 798
BstNI	CCWGG	1 cut(s)	646
BstNSI	RCATGY	2 cut(s)	488, 509
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	644
BstV1I	GCAGC	2 cut(s)	413, 523
BstV2I	GAAGAC	1 cut(s)	373
BstXI	CCANNNNNNTGG	1 cut(s)	110
BsuI	GTATCC	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	229, 321
BtsIMutI	CAGTG	1 cut(s)	457
BveI	ACCTGC	1 cut(s)	641
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	1 cut(s)	777
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	479, 498
CspAI	ACCGGT	1 cut(s)	71
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviAII	CATG	5 cut(s)	110, 485, 506, 554, 778
DdeI	CTNAG	2 cut(s)	475, 736
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	737
EarI	CTCTTC	1 cut(s)	737
Eco130I	CCWWGG	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	522
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	479, 498
Eco57I	CTGAAG	2 cut(s)	27, 657
Eco88I	CYCGRG	1 cut(s)	620
Eco91I	GGTNACC	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	644
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	5 cut(s)	113, 488, 509, 557, 781
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	5 cut(s)	109, 484, 505, 553, 777
Fnu4HI	GCNGC	2 cut(s)	402, 537
FokI	GGATG	2 cut(s)	236, 308
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	2 cut(s)	402, 537
FspBI	CTAG	2 cut(s)	405, 815
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	2 cut(s)	402, 537
GsaI	CCCAGC	1 cut(s)	297
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	5 cut(s)	113, 488, 509, 557, 781
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	2 cut(s)	286, 568
HindII	GTYRAC	2 cut(s)	286, 568
HinfI	GANTC	6 cut(s)	14, 167, 378, 559, 749, 805
HpaI	GTTAAC	1 cut(s)	568
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	4 cut(s)	67, 191, 300, 514
Hpy166II	GTNNAC	2 cut(s)	286, 568
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	2 cut(s)	317, 778
Hpy8I	GTNNAC	2 cut(s)	286, 568
HpyAV	CCTTC	2 cut(s)	346, 367
HpyCH4III	ACNGT	3 cut(s)	253, 572, 706
HpyCH4IV	ACGT	3 cut(s)	210, 336, 531
HpyCH4V	TGCA	7 cut(s)	116, 139, 157, 239, 332, 488, 688
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 798
HpyF3I	CTNAG	2 cut(s)	475, 736
HpySE526I	ACGT	3 cut(s)	210, 336, 531
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	5 cut(s)	113, 488, 509, 557, 781
HspAI	GCGC	1 cut(s)	94
KspAI	GTTAAC	1 cut(s)	568
Kzo9I	GATC	1 cut(s)	414
LguI	GCTCTTC	1 cut(s)	737
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	2 cut(s)	413, 523
LweI	GCATC	2 cut(s)	631, 801
MaeI	CTAG	2 cut(s)	405, 815
MaeII	ACGT	3 cut(s)	210, 336, 531
MaeIII	GTNAC	4 cut(s)	55, 179, 206, 211
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MboII	GAAGA	3 cut(s)	373, 650, 724
MhlI	GDGCHC	2 cut(s)	522, 732
MluCI	AATT	4 cut(s)	438, 549, 598, 698
MlyI	GAGTC	2 cut(s)	387, 758
MnlI	CCTC	6 cut(s)	24, 182, 214, 464, 616, 619
Mph1103I	ATGCAT	1 cut(s)	490
MseI	TTAA	2 cut(s)	366, 567
MslI	CAYNNNNRTG	2 cut(s)	108, 800
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	646
MwoI	GCNNNNNNNGC	2 cut(s)	93, 798
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	5 cut(s)	113, 488, 509, 557, 781
NlaIV	GGNNCC	3 cut(s)	21, 67, 499
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	4 cut(s)	55, 179, 206, 211
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	2 cut(s)	488, 509
OliI	CACNNNNGTG	1 cut(s)	800
PaeI	GCATGC	1 cut(s)	509
PagI	TCATGA	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	737
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PfeI	GAWTC	4 cut(s)	14, 167, 559, 805
PinAI	ACCGGT	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	403, 538
PleI	GAGTC	2 cut(s)	386, 757
PpsI	GAGTC	2 cut(s)	386, 757
PshBI	ATTAAT	1 cut(s)	366
Psp1406I	AACGTT	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	644
PspEI	GGTNACC	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	644
PspN4I	GGNNCC	3 cut(s)	21, 67, 499
PspPI	GGNCC	2 cut(s)	479, 498
RseI	CAYNNNNRTG	2 cut(s)	108, 800
SapI	GCTCTTC	1 cut(s)	737
SaqAI	TTAA	2 cut(s)	366, 567
SatI	GCNGC	2 cut(s)	402, 537
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	2 cut(s)	479, 498
SchI	GAGTC	2 cut(s)	387, 758
ScrFI	CCNGG	1 cut(s)	646
SduI	GDGCHC	2 cut(s)	522, 732
SfaNI	GCATC	2 cut(s)	631, 801
SinI	GGWCC	2 cut(s)	479, 498
SmiMI	CAYNNNNRTG	2 cut(s)	108, 800
SphI	GCATGC	1 cut(s)	509
Sse9I	AATT	4 cut(s)	438, 549, 598, 698
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	2 cut(s)	405, 815
StyD4I	CCNGG	1 cut(s)	644
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	3 cut(s)	253, 572, 706
TaiI	ACGT	3 cut(s)	213, 339, 534
TasI	AATT	4 cut(s)	438, 549, 598, 698
TfiI	GAWTC	4 cut(s)	14, 167, 559, 805
Tru1I	TTAA	2 cut(s)	366, 567
Tru9I	TTAA	2 cut(s)	366, 567
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	4 cut(s)	55, 179, 206, 211
TseI	GCWGC	2 cut(s)	401, 536
Tsp45I	GTSAC	4 cut(s)	55, 179, 206, 211
TspDTI	ATGAA	2 cut(s)	407, 542
TspGWI	ACGGA	1 cut(s)	647
TspRI	CASTG	1 cut(s)	457
VpaK11BI	GGWCC	2 cut(s)	479, 498
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	2 cut(s)	549, 598
XceI	RCATGY	2 cut(s)	488, 509
XspI	CTAG	2 cut(s)	405, 815
ZraI	GACGTC	1 cut(s)	211
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.