Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Forward (+)

4116153 .. 4119380

Gene Structure 3228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG027100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAATAATGAAGAAGTTCCAAGCCGGAGGTTACTAGGGAAAGTTGCATTGGTGACCGGTGGAGCCACTGGGATTGGAGAGAGCATTGTCCGCCTATTCCACAAACATGGTGCAAAAGTTTGCTTAGTTGATGTGCAGGACAACTTGGGATTGCCAGTCTGCGAGTCTCTTGGCGGCGACGCAAATGTTTGTTATTTCCATTGTGATGTCACAAAAGAAGCTGATGTTAGCGGTGCAGTTGATTTCACAGTTGATAAGTATGGCACACTTGATATCATGGTCAACAATGCTGGGGTGTCAGGTTCACCCTGTCCTGATATCCGCAATGCAGACTTATCTGAATTTGAGAAGGTGTTCGATATTAATGTGAAGGGAGTTTTCCACGGAATGAAACACGCAGCTAGGATGATGATCCCTCTGAAAAAGGGTAGTATCATTTCTCTTTGCAGTGTTTCAAGCACTACAGGAGGCCTAGGACCGCATGCATACACAGGGTCCAAGCACGCTGTGTTGGGGCTGACCAAGAATGTTGCTGCTGAGCTTGGAATTCATGGCATACGTGTTAACTGTGTCTCTCCTTATGCAGTGGCGACTAATTTGGCTTTGGCTCACTTGGCTGAGGAAGAGAGAACCGAAGATGCCTGGACAGGGTTCCGGGATTTCGTAGGGAGACATGCCAATTTGCAGGGAGTGGAATTGACAGTTGATGATGTTGCAAATGCTGTGCTTTTCTTAGCAAGTGATGAGTCCAGGTATATAAGTGGGGATAATCTCATGATTGATGGTGGACTCACGTGCGTGAATCACTCGCTTAGAGTCTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

275

Amino Acids

29.27

Weight (kDa)

5.74

Isoelectric Point (pI)

22.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	14 - 201	9e-51	short chain dehydrogenase
KR	PF08659	16 - 173	5.6e-07	KR domain
adh_short_C2	PF13561	22 - 265	1.7e-59	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	91, 174, 231, 322, 479
AclWI	GGATC	1 cut(s)	406
AcsI	RAATTY	2 cut(s)	341, 546
AcuI	CTGAAG	1 cut(s)	805
AcvI	CACGTG	1 cut(s)	795
AdeI	CACNNNGTG	1 cut(s)	508
AfiI	CCNNNNNNNGG	1 cut(s)	648
AflIII	ACRYGT	1 cut(s)	559
AgeI	ACCGGT	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	456
AjnI	CCWGG	2 cut(s)	641, 749
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AleI	CACNNNNGTG	1 cut(s)	797
AluBI	AGCT	3 cut(s)	221, 401, 541
AluI	AGCT	3 cut(s)	221, 401, 541
Alw26I	GTCTC	3 cut(s)	171, 577, 664
AlwI	GGATC	1 cut(s)	406
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	2 cut(s)	398, 533
ApoI	RAATTY	2 cut(s)	341, 546
AseI	ATTAAT	1 cut(s)	363
AsiGI	ACCGGT	1 cut(s)	56
Asp700I	GAANNNNTTC	2 cut(s)	15, 353
AspA2I	CCTAGG	1 cut(s)	472
AspS9I	GGNCC	2 cut(s)	476, 495
AsuC2I	CCSGG	1 cut(s)	656
AsuHPI	GGTGA	2 cut(s)	64, 297
AvaII	GGWCC	2 cut(s)	476, 495
AvrII	CCTAGG	1 cut(s)	472
BbrPI	CACGTG	1 cut(s)	795
BbsI	GAAGAC	1 cut(s)	811
BbvCI	CCTCAGC	1 cut(s)	618
BbvI	GCAGC	2 cut(s)	410, 520
BccI	CCATC	1 cut(s)	776
BciT130I	CCWGG	2 cut(s)	643, 751
BcnI	CCSGG	1 cut(s)	656
BcoDI	GTCTC	3 cut(s)	171, 577, 664
BfaI	CTAG	3 cut(s)	35, 402, 473
BfmI	CTRYAG	1 cut(s)	462
BisI	GCNGC	3 cut(s)	175, 399, 534
BlnI	CCTAGG	1 cut(s)	472
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	3 cut(s)	176, 400, 535
Bme1390I	CCNGG	3 cut(s)	643, 656, 751
Bme18I	GGWCC	2 cut(s)	476, 495
BmgT120I	GGNCC	2 cut(s)	476, 495
BmiI	GGNNCC	3 cut(s)	64, 496, 653
BmrFI	CCNGG	3 cut(s)	643, 656, 751
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	628
BmuI	ACTGGG	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	811
Bpu10I	CCTNAGC	1 cut(s)	618
Bpu1102I	GCTNAGC	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	656
BsaAI	YACGTR	2 cut(s)	560, 795
BsaBI	GATNNNNATC	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	382, 472
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	648
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	73, 155
Bse3DI	GCAATG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	643, 751
BseDI	CCNNGG	2 cut(s)	382, 472
BseGI	GGATG	1 cut(s)	411
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	648
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	2 cut(s)	528, 609
BseNI	ACTGG	2 cut(s)	73, 155
BseXI	GCAGC	2 cut(s)	410, 520
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	2 cut(s)	155, 255
BshFI	GGCC	1 cut(s)	471
BshTI	ACCGGT	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	25, 57, 655
BslI	CCNNNNNNNGG	1 cut(s)	648
BsmAI	GTCTC	3 cut(s)	171, 577, 664
BsnI	GGCC	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	411
Bsp1720I	GCTNAGC	1 cut(s)	537
BspACI	CCGC	5 cut(s)	91, 174, 231, 322, 479
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	2 cut(s)	529, 610
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	3 cut(s)	64, 496, 653
BspPI	GGATC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	331
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	73, 155
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	382, 472
BssMI	GATC	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	472
Bst2UI	CCWGG	2 cut(s)	643, 751
Bst4CI	ACNGT	3 cut(s)	250, 569, 703
Bst6I	CTCTTC	1 cut(s)	618
BstBAI	YACGTR	2 cut(s)	560, 795
BstC8I	GCNNGC	2 cut(s)	483, 504
BstDEI	CTNAG	5 cut(s)	124, 537, 618, 733, 812
BstDSI	CCRYGG	1 cut(s)	382
BstEII	GGTNACC	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	411
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	3 cut(s)	171, 577, 664
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 614
BstNI	CCWGG	2 cut(s)	643, 751
BstNSI	RCATGY	2 cut(s)	485, 677
BstPI	GGTNACC	1 cut(s)	52
BstSCI	CCNGG	3 cut(s)	641, 654, 749
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	410, 520
BstV2I	GAAGAC	1 cut(s)	811
BstXI	CCANNNNNNTGG	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	471
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	411
BtsI	GCAGTG	2 cut(s)	454, 591
BtsIMutI	CAGTG	3 cut(s)	66, 454, 591
Cac8I	GCNNGC	2 cut(s)	483, 504
CciI	TCATGA	1 cut(s)	774
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	476, 495
CseI	GACGC	1 cut(s)	188
CspAI	ACCGGT	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	6 cut(s)	107, 277, 482, 551, 674, 775
DdeI	CTNAG	5 cut(s)	124, 537, 618, 733, 812
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
DraIII	CACNNNGTG	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	472
Eco147I	AGGCCT	1 cut(s)	471
Eco32I	GATATC	2 cut(s)	274, 319
Eco47I	GGWCC	2 cut(s)	476, 495
Eco57I	CTGAAG	1 cut(s)	805
Eco72I	CACGTG	1 cut(s)	795
Eco91I	GGTNACC	1 cut(s)	52
EcoO65I	GGTNACC	1 cut(s)	52
EcoRI	GAATTC	1 cut(s)	546
EcoRII	CCWGG	2 cut(s)	641, 749
EcoRV	GATATC	2 cut(s)	274, 319
EcoT14I	CCWWGG	1 cut(s)	472
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	6 cut(s)	110, 280, 485, 554, 677, 778
FatI	CATG	6 cut(s)	106, 276, 481, 550, 673, 774
Fnu4HI	GCNGC	3 cut(s)	175, 399, 534
FokI	GGATG	1 cut(s)	418
Fsp4HI	GCNGC	3 cut(s)	175, 399, 534
FspBI	CTAG	3 cut(s)	35, 402, 473
GluI	GCNGC	3 cut(s)	175, 399, 534
GsaI	CCCAGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	471
HapII	CCGG	3 cut(s)	25, 57, 655
HgaI	GACGC	1 cut(s)	188
Hin1II	CATG	6 cut(s)	110, 280, 485, 554, 677, 778
HincII	GTYRAC	2 cut(s)	283, 565
HindII	GTYRAC	2 cut(s)	283, 565
HinfI	GANTC	5 cut(s)	164, 746, 789, 802, 816
HpaI	GTTAAC	1 cut(s)	565
HpaII	CCGG	3 cut(s)	25, 57, 655
HphI	GGTGA	2 cut(s)	64, 297
Hpy166II	GTNNAC	4 cut(s)	283, 305, 565, 788
Hpy188I	TCNGA	3 cut(s)	340, 420, 824
Hpy188III	TCNNGA	2 cut(s)	314, 775
Hpy8I	GTNNAC	4 cut(s)	283, 305, 565, 788
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	343, 364
HpyCH4III	ACNGT	3 cut(s)	250, 569, 703
HpyCH4IV	ACGT	2 cut(s)	559, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 614
HpyF3I	CTNAG	5 cut(s)	124, 537, 618, 733, 812
HpySE526I	ACGT	2 cut(s)	559, 794
Hsp92II	CATG	6 cut(s)	110, 280, 485, 554, 677, 778
KspAI	GTTAAC	1 cut(s)	565
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	2 cut(s)	410, 520
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	3 cut(s)	35, 402, 473
MaeII	ACGT	2 cut(s)	559, 794
MaeIII	GTNAC	3 cut(s)	30, 52, 208
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	4 cut(s)	23, 635, 647, 811
MluCI	AATT	5 cut(s)	341, 546, 595, 679, 695
MlyI	GAGTC	4 cut(s)	173, 755, 783, 825
MnlI	CCTC	4 cut(s)	21, 426, 461, 613
Mph1103I	ATGCAT	1 cut(s)	487
MroXI	GAANNNNTTC	2 cut(s)	15, 353
MseI	TTAA	2 cut(s)	363, 564
MslI	CAYNNNNRTG	3 cut(s)	105, 204, 797
MspI	CCGG	3 cut(s)	25, 57, 655
MspR9I	CCNGG	3 cut(s)	643, 656, 751
MvaI	CCWGG	2 cut(s)	643, 751
MwoI	GCNNNNNNNGC	2 cut(s)	90, 614
NciI	CCSGG	1 cut(s)	656
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	6 cut(s)	110, 280, 485, 554, 677, 778
NlaIV	GGNNCC	3 cut(s)	64, 496, 653
NmuCI	GTSAC	2 cut(s)	52, 208
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	2 cut(s)	485, 677
OliI	CACNNNNGTG	1 cut(s)	797
PaeI	GCATGC	1 cut(s)	485
PagI	TCATGA	1 cut(s)	774
PceI	AGGCCT	1 cut(s)	471
PdmI	GAANNNNTTC	2 cut(s)	15, 353
PfeI	GAWTC	1 cut(s)	802
PfoI	TCCNGGA	1 cut(s)	654
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	176, 400, 535
PleI	GAGTC	4 cut(s)	172, 754, 783, 824
PmaCI	CACGTG	1 cut(s)	795
PmlI	CACGTG	1 cut(s)	795
PpsI	GAGTC	4 cut(s)	172, 754, 783, 824
Ppu21I	YACGTR	2 cut(s)	560, 795
PshBI	ATTAAT	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	641, 749
PspCI	CACGTG	1 cut(s)	795
PspEI	GGTNACC	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	2 cut(s)	641, 749
PspN4I	GGNNCC	3 cut(s)	64, 496, 653
PspPI	GGNCC	2 cut(s)	476, 495
RseI	CAYNNNNRTG	3 cut(s)	105, 204, 797
SaqAI	TTAA	2 cut(s)	363, 564
SatI	GCNGC	3 cut(s)	175, 399, 534
Sau3AI	GATC	1 cut(s)	411
Sau96I	GGNCC	2 cut(s)	476, 495
SchI	GAGTC	4 cut(s)	173, 755, 783, 825
ScrFI	CCNGG	3 cut(s)	643, 656, 751
SetI	ASST	9 cut(s)	32, 223, 304, 354, 403, 543, 562, 755, 797
SfaNI	GCATC	1 cut(s)	628
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	2 cut(s)	476, 495
SmiMI	CAYNNNNRTG	3 cut(s)	105, 204, 797
SphI	GCATGC	1 cut(s)	485
Sse9I	AATT	5 cut(s)	341, 546, 595, 679, 695
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	5 cut(s)	91, 174, 231, 322, 479
SspMI	CTAG	3 cut(s)	35, 402, 473
StuI	AGGCCT	1 cut(s)	471
StyD4I	CCNGG	3 cut(s)	641, 654, 749
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	3 cut(s)	250, 569, 703
TaiI	ACGT	2 cut(s)	562, 797
TaqI	TCGA	1 cut(s)	357
TasI	AATT	5 cut(s)	341, 546, 595, 679, 695
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	802
Tru1I	TTAA	2 cut(s)	363, 564
Tru9I	TTAA	2 cut(s)	363, 564
TscAI	CASTG	3 cut(s)	73, 454, 591
TseFI	GTSAC	2 cut(s)	52, 208
TseI	GCWGC	2 cut(s)	398, 533
Tsp45I	GTSAC	2 cut(s)	52, 208
TspDTI	ATGAA	4 cut(s)	17, 24, 404, 539
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	3 cut(s)	73, 454, 591
VpaK11BI	GGWCC	2 cut(s)	476, 495
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	2 cut(s)	341, 546
XceI	RCATGY	2 cut(s)	485, 677
XmaJI	CCTAGG	1 cut(s)	472
XmnI	GAANNNNTTC	2 cut(s)	15, 353
XspI	CTAG	3 cut(s)	35, 402, 473
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.