Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Forward (+)

5065595 .. 5067301

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0029700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGACAATGACGGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATAAGCGTGCAAACCGTAATGTGGATATCTTGAGGGAATTTTGCACGGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTAAGGCTAACCCAGATTACAAGGGTGTATGCTATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGGTATTTTTCTTTAAAAATCCCACGATTTTAGGGTTTGTTGCATTCTCGTTAATAATATCACTAGTTCCTTCAATTTCTTCGTTTGCGATCTACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

159

Amino Acids

18.12

Weight (kDa)

6.82

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	235
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	133, 453
AhlI	ACTAGT	1 cut(s)	442
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	3 cut(s)	55, 112, 373
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	2 cut(s)	109, 371
ApoI	RAATTY	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	56
BciT130I	CCWGG	3 cut(s)	57, 114, 375
BcuI	ACTAGT	1 cut(s)	442
BfaI	CTAG	2 cut(s)	27, 443
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	3 cut(s)	57, 114, 375
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	110
BmrFI	CCNGG	3 cut(s)	57, 114, 375
BpmI	CTGGAG	1 cut(s)	396
BpuEI	CTTGAG	2 cut(s)	265, 339
BsaBI	GATNNNNATC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	55, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	364
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	3 cut(s)	57, 114, 375
BseDI	CCNNGG	2 cut(s)	55, 112
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	475
BshFI	GGCC	2 cut(s)	111, 373
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	2 cut(s)	157, 422
BsnI	GGCC	2 cut(s)	111, 373
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	295, 468
BspANI	GGCC	2 cut(s)	111, 373
BspCNI	CTCAG	1 cut(s)	28
BspPI	GGATC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	55, 112
BssMI	GATC	2 cut(s)	295, 468
Bst2UI	CCWGG	3 cut(s)	57, 114, 375
Bst4CI	ACNGT	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	222, 371
BstDEI	CTNAG	1 cut(s)	36
BstKTI	GATC	2 cut(s)	298, 471
BstMBI	GATC	2 cut(s)	295, 468
BstNI	CCWGG	3 cut(s)	57, 114, 375
BstSCI	CCNGG	3 cut(s)	55, 112, 373
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	111, 373
BtrI	CACGTC	1 cut(s)	103
Cac8I	GCNNGC	2 cut(s)	222, 371
Cfr13I	GGNCC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	6 cut(s)	26, 32, 54, 111, 314, 373
CviKI_1	RGCY	6 cut(s)	26, 32, 54, 111, 314, 373
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	2 cut(s)	297, 470
DpnII	GATC	2 cut(s)	295, 468
DraI	TTTAAA	1 cut(s)	394
Eco147I	AGGCCT	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	56
Eco32I	GATATC	2 cut(s)	241, 289
EcoRII	CCWGG	3 cut(s)	55, 112, 373
EcoRV	GATATC	2 cut(s)	241, 289
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	1 cut(s)	101
FaiI	YATR	7 cut(s)	99, 188, 201, 203, 285, 337, 342
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	56
FspBI	CTAG	2 cut(s)	27, 443
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	111, 373
Hin1II	CATG	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	126
HpaI	GTTAAC	1 cut(s)	76
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	3 cut(s)	133, 244, 356
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	353, 459
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	5 cut(s)	155, 224, 258, 369, 422
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	101
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	295, 468
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	9 cut(s)	42, 69, 99, 126, 204, 333, 355, 360, 387
MaeI	CTAG	2 cut(s)	27, 443
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	59, 302
MalI	GATC	2 cut(s)	297, 470
MboI	GATC	2 cut(s)	295, 468
MboII	GAAGA	3 cut(s)	28, 121, 450
MfeI	CAATTG	1 cut(s)	47
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	3 cut(s)	47, 251, 453
MnlI	CCTC	2 cut(s)	240, 373
MseI	TTAA	4 cut(s)	75, 309, 393, 431
MspR9I	CCNGG	3 cut(s)	57, 114, 375
MunI	CAATTG	1 cut(s)	47
Mva1269I	GAATGC	2 cut(s)	157, 422
MvaI	CCWGG	3 cut(s)	57, 114, 375
NdeII	GATC	2 cut(s)	295, 468
NlaIII	CATG	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	59
PceI	AGGCCT	1 cut(s)	373
PctI	GAATGC	2 cut(s)	157, 422
PfeI	GAWTC	1 cut(s)	126
Psp6I	CCWGG	3 cut(s)	55, 112, 373
PspGI	CCWGG	3 cut(s)	55, 112, 373
PspPI	GGNCC	1 cut(s)	110
PsrI	GAACNNNNNNTAC	2 cut(s)	260, 292
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	4 cut(s)	75, 309, 393, 431
Sau3AI	GATC	2 cut(s)	295, 468
Sau96I	GGNCC	1 cut(s)	110
ScaI	AGTACT	1 cut(s)	278
ScrFI	CCNGG	3 cut(s)	57, 114, 375
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	6 cut(s)	61, 105, 162, 193, 364, 384
SmlI	CTYRAG	2 cut(s)	244, 354
SmoI	CTYRAG	2 cut(s)	244, 354
SpeI	ACTAGT	1 cut(s)	442
Sse9I	AATT	3 cut(s)	47, 251, 453
SseBI	AGGCCT	1 cut(s)	373
SspMI	CTAG	2 cut(s)	27, 443
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	3 cut(s)	55, 112, 373
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	105
TasI	AATT	3 cut(s)	47, 251, 453
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	4 cut(s)	75, 309, 393, 431
Tru9I	TTAA	4 cut(s)	75, 309, 393, 431
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	108
TspGWI	ACGGA	2 cut(s)	26, 275
XapI	RAATTY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XspI	CTAG	2 cut(s)	27, 443
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.