Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014135.1

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1949

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014135.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 893 bp

aggaccaaaaacaccgaaaaccaaagcttgaatttcagttgagacggcgcgggccgtccaccaccatgaataatgaagaagttccaagccggaggttactagggaaagttgcattggtgaccggtggagccactgggattggagagagcattgtccgcctattccacaaacatggtgcaaaagtttgcttagttgatgtgcaggacaacttgggattgcaagtctccgagtctcttggcggcgacgcaaatgtttgttatttccattgtgatgtcacaaaagaagctgatgttagcggtgcagttgatttcacagtcggtaagtatggcacacttgatatcatggtcaacaatgctggggtgtcaggttcaccctgtcctgatatccgcaatgcagacttatctgaatttgagaaggtgttcgatattaatgtgaagggagttttccacggaatgaaacacgcagctaggacgatgatccccctgaaaaagggtagtatcatttctctttgcagtgttgcaagcactacaggaggcctaggaccgcatgcatacacagggtccaagcacgctgtgttggggctgaccaagaatgttgctgctgagcttggaattcatggcatacgtgttaactgtgtctctccttatgcagtggcaactaatttggctttggctcacttggctgaggaagagagaaccgaagatgcctggacagggttccgggatttcgttgggagaaatgccaatttgcagggagtggaattgacagttgatgatgttgcaaatgctgtgcttttcttagcaagtgatgagtccaggtatataagtggggataatctcatgattgatggtggactcacgtgcgtgaatcactcgcttagagtcttcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

296

Amino Acids

31.72

Weight (kDa)

6.63

Isoelectric Point (pI)

25.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	50
AciI	CCGC	6 cut(s)	50, 156, 239, 296, 387, 544
AclWI	GGATC	1 cut(s)	471
AcsI	RAATTY	3 cut(s)	31, 406, 611
AcuI	CTGAAG	1 cut(s)	870
AcvI	CACGTG	1 cut(s)	860
AdeI	CACNNNGTG	1 cut(s)	573
AfiI	CCNNNNNNNGG	2 cut(s)	489, 713
AflIII	ACRYGT	1 cut(s)	624
AgeI	ACCGGT	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	706, 814
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AleI	CACNNNNGTG	1 cut(s)	862
AluBI	AGCT	4 cut(s)	27, 286, 466, 606
AluI	AGCT	4 cut(s)	27, 286, 466, 606
Alw26I	GTCTC	4 cut(s)	36, 228, 236, 642
AlwI	GGATC	1 cut(s)	471
AoxI	GGCC	2 cut(s)	52, 534
ApeKI	GCWGC	2 cut(s)	463, 598
ApoI	RAATTY	3 cut(s)	31, 406, 611
AseI	ATTAAT	1 cut(s)	428
AsiGI	ACCGGT	1 cut(s)	121
Asp700I	GAANNNNTTC	2 cut(s)	80, 418
AspA2I	CCTAGG	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	4 cut(s)	3, 52, 541, 560
AsuC2I	CCSGG	1 cut(s)	721
AsuHPI	GGTGA	2 cut(s)	129, 362
AvaII	GGWCC	3 cut(s)	3, 541, 560
AvrII	CCTAGG	1 cut(s)	537
BbrPI	CACGTG	1 cut(s)	860
BbsI	GAAGAC	1 cut(s)	876
BbvCI	CCTCAGC	1 cut(s)	683
BbvI	GCAGC	2 cut(s)	475, 585
BccI	CCATC	1 cut(s)	841
BceAI	ACGGC	2 cut(s)	39, 61
BciT130I	CCWGG	2 cut(s)	708, 816
BcnI	CCSGG	1 cut(s)	721
BcoDI	GTCTC	4 cut(s)	36, 228, 236, 642
BfaI	CTAG	3 cut(s)	100, 467, 538
BfmI	CTRYAG	1 cut(s)	527
BisI	GCNGC	3 cut(s)	240, 464, 599
BlnI	CCTAGG	1 cut(s)	537
BlpI	GCTNAGC	1 cut(s)	602
BlsI	GCNGC	3 cut(s)	241, 465, 600
Bme1390I	CCNGG	3 cut(s)	708, 721, 816
Bme18I	GGWCC	3 cut(s)	3, 541, 560
BmgT120I	GGNCC	4 cut(s)	3, 52, 541, 560
BmiI	GGNNCC	3 cut(s)	129, 561, 718
BmrFI	CCNGG	3 cut(s)	708, 721, 816
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	693
BmuI	ACTGGG	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	876
Bpu10I	CCTNAGC	1 cut(s)	683
Bpu1102I	GCTNAGC	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	721
BsaAI	YACGTR	2 cut(s)	625, 860
BsaJI	CCNNGG	2 cut(s)	447, 537
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	2 cut(s)	489, 713
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	2 cut(s)	708, 816
BseDI	CCNNGG	2 cut(s)	447, 537
BseLI	CCNNNNNNNGG	2 cut(s)	489, 713
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	593, 674
BseNI	ACTGG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	475, 585
BseYI	CCCAGC	1 cut(s)	355
BsgI	GTGCAG	2 cut(s)	220, 320
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	54, 536
BshTI	ACCGGT	1 cut(s)	121
BsiSI	CCGG	3 cut(s)	90, 122, 720
BslI	CCNNNNNNNGG	2 cut(s)	489, 713
BsmAI	GTCTC	4 cut(s)	36, 228, 236, 642
BsmBI	CGTCTC	1 cut(s)	36
BsnI	GGCC	2 cut(s)	54, 536
Bsp143I	GATC	1 cut(s)	476
Bsp1720I	GCTNAGC	1 cut(s)	602
BspACI	CCGC	6 cut(s)	50, 156, 239, 296, 387, 544
BspANI	GGCC	2 cut(s)	54, 536
BspCNI	CTCAG	2 cut(s)	594, 675
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	839
BspLI	GGNNCC	3 cut(s)	129, 561, 718
BspPI	GGATC	1 cut(s)	471
BsrDI	GCAATG	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	447, 537
BssMI	GATC	1 cut(s)	476
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	2 cut(s)	708, 816
Bst4CI	ACNGT	3 cut(s)	315, 634, 768
Bst6I	CTCTTC	1 cut(s)	683
BstBAI	YACGTR	2 cut(s)	625, 860
BstC8I	GCNNGC	4 cut(s)	52, 522, 548, 569
BstDEI	CTNAG	5 cut(s)	189, 602, 683, 798, 877
BstDSI	CCRYGG	1 cut(s)	447
BstEII	GGTNACC	1 cut(s)	117
BstENI	CCTNNNNNAGG	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	479
BstMAI	GTCTC	4 cut(s)	36, 228, 236, 642
BstMBI	GATC	1 cut(s)	476
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 679
BstNI	CCWGG	2 cut(s)	708, 816
BstNSI	RCATGY	1 cut(s)	550
BstPI	GGTNACC	1 cut(s)	117
BstSCI	CCNGG	3 cut(s)	706, 719, 814
BstSFI	CTRYAG	1 cut(s)	527
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	475, 585
BstV2I	GAAGAC	1 cut(s)	876
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	54, 536
BtgI	CCRYGG	1 cut(s)	447
BtsI	GCAGTG	2 cut(s)	519, 656
BtsIMutI	CAGTG	3 cut(s)	131, 519, 656
Cac8I	GCNNGC	4 cut(s)	52, 522, 548, 569
CciI	TCATGA	1 cut(s)	839
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	4 cut(s)	3, 52, 541, 560
CseI	GACGC	1 cut(s)	253
CspAI	ACCGGT	1 cut(s)	121
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviAII	CATG	6 cut(s)	66, 172, 342, 547, 616, 840
DdeI	CTNAG	5 cut(s)	189, 602, 683, 798, 877
DpnI	GATC	1 cut(s)	478
DpnII	GATC	1 cut(s)	476
DraIII	CACNNNGTG	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	683
EarI	CTCTTC	1 cut(s)	683
EciI	GGCGGA	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	537
Eco147I	AGGCCT	1 cut(s)	536
Eco32I	GATATC	2 cut(s)	339, 384
Eco47I	GGWCC	3 cut(s)	3, 541, 560
Eco57I	CTGAAG	1 cut(s)	870
Eco72I	CACGTG	1 cut(s)	860
Eco91I	GGTNACC	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	487
EcoO65I	GGTNACC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	611
EcoRII	CCWGG	2 cut(s)	706, 814
EcoRV	GATATC	2 cut(s)	339, 384
EcoT14I	CCWWGG	1 cut(s)	537
EcoT22I	ATGCAT	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	537
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	6 cut(s)	69, 175, 345, 550, 619, 843
FatI	CATG	6 cut(s)	65, 171, 341, 546, 615, 839
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	240, 464, 599
Fsp4HI	GCNGC	3 cut(s)	240, 464, 599
FspBI	CTAG	3 cut(s)	100, 467, 538
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	3 cut(s)	240, 464, 599
GsaI	CCCAGC	1 cut(s)	359
HaeIII	GGCC	2 cut(s)	54, 536
HapII	CCGG	3 cut(s)	90, 122, 720
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	6 cut(s)	69, 175, 345, 550, 619, 843
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	2 cut(s)	348, 630
HindII	GTYRAC	2 cut(s)	348, 630
HindIII	AAGCTT	1 cut(s)	25
HinfI	GANTC	5 cut(s)	229, 811, 854, 867, 881
HpaI	GTTAAC	1 cut(s)	630
HpaII	CCGG	3 cut(s)	90, 122, 720
HphI	GGTGA	2 cut(s)	129, 362
Hpy166II	GTNNAC	5 cut(s)	59, 348, 370, 630, 853
Hpy188I	TCNGA	3 cut(s)	228, 405, 889
Hpy188III	TCNNGA	2 cut(s)	379, 840
Hpy8I	GTNNAC	5 cut(s)	59, 348, 370, 630, 853
Hpy99I	CGWCG	1 cut(s)	247
HpyAV	CCTTC	2 cut(s)	408, 429
HpyCH4III	ACNGT	3 cut(s)	315, 634, 768
HpyCH4IV	ACGT	2 cut(s)	624, 859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 679
HpyF3I	CTNAG	5 cut(s)	189, 602, 683, 798, 877
HpySE526I	ACGT	2 cut(s)	624, 859
Hsp92II	CATG	6 cut(s)	69, 175, 345, 550, 619, 843
HspAI	GCGC	1 cut(s)	48
KspAI	GTTAAC	1 cut(s)	630
Kzo9I	GATC	1 cut(s)	476
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	2 cut(s)	475, 585
LweI	GCATC	1 cut(s)	693
MaeI	CTAG	3 cut(s)	100, 467, 538
MaeII	ACGT	2 cut(s)	624, 859
MaeIII	GTNAC	3 cut(s)	95, 117, 273
MalI	GATC	1 cut(s)	478
MboI	GATC	1 cut(s)	476
MboII	GAAGA	4 cut(s)	88, 700, 712, 876
MluCI	AATT	6 cut(s)	31, 406, 611, 660, 744, 760
MlyI	GAGTC	4 cut(s)	238, 820, 848, 890
MnlI	CCTC	3 cut(s)	86, 526, 678
Mph1103I	ATGCAT	1 cut(s)	552
MroXI	GAANNNNTTC	2 cut(s)	80, 418
MseI	TTAA	2 cut(s)	428, 629
MslI	CAYNNNNRTG	4 cut(s)	64, 170, 269, 862
MspI	CCGG	3 cut(s)	90, 122, 720
MspR9I	CCNGG	3 cut(s)	708, 721, 816
MvaI	CCWGG	2 cut(s)	708, 816
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	155, 679
NciI	CCSGG	1 cut(s)	721
NdeII	GATC	1 cut(s)	476
NlaIII	CATG	6 cut(s)	69, 175, 345, 550, 619, 843
NlaIV	GGNNCC	3 cut(s)	129, 561, 718
NmuCI	GTSAC	2 cut(s)	117, 273
NsiI	ATGCAT	1 cut(s)	552
NspI	RCATGY	1 cut(s)	550
OliI	CACNNNNGTG	1 cut(s)	862
PaeI	GCATGC	1 cut(s)	550
PagI	TCATGA	1 cut(s)	839
PceI	AGGCCT	1 cut(s)	536
PdmI	GAANNNNTTC	2 cut(s)	80, 418
PfeI	GAWTC	1 cut(s)	867
PfoI	TCCNGGA	1 cut(s)	719
PinAI	ACCGGT	1 cut(s)	121
PkrI	GCNGC	3 cut(s)	241, 465, 600
PleI	GAGTC	4 cut(s)	237, 819, 848, 889
PmaCI	CACGTG	1 cut(s)	860
PmlI	CACGTG	1 cut(s)	860
PpsI	GAGTC	4 cut(s)	237, 819, 848, 889
Ppu21I	YACGTR	2 cut(s)	625, 860
PshBI	ATTAAT	1 cut(s)	428
Psp6I	CCWGG	2 cut(s)	706, 814
PspCI	CACGTG	1 cut(s)	860
PspEI	GGTNACC	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	2 cut(s)	706, 814
PspN4I	GGNNCC	3 cut(s)	129, 561, 718
PspPI	GGNCC	4 cut(s)	3, 52, 541, 560
RseI	CAYNNNNRTG	4 cut(s)	64, 170, 269, 862
SaqAI	TTAA	2 cut(s)	428, 629
SatI	GCNGC	3 cut(s)	240, 464, 599
Sau3AI	GATC	1 cut(s)	476
Sau96I	GGNCC	4 cut(s)	3, 52, 541, 560
SchI	GAGTC	4 cut(s)	238, 820, 848, 890
ScrFI	CCNGG	3 cut(s)	708, 721, 816
SfaNI	GCATC	1 cut(s)	693
SfcI	CTRYAG	1 cut(s)	527
SinI	GGWCC	3 cut(s)	3, 541, 560
SmiMI	CAYNNNNRTG	4 cut(s)	64, 170, 269, 862
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	6 cut(s)	31, 406, 611, 660, 744, 760
SseBI	AGGCCT	1 cut(s)	536
SsiI	CCGC	6 cut(s)	50, 156, 239, 296, 387, 544
SspMI	CTAG	3 cut(s)	100, 467, 538
StuI	AGGCCT	1 cut(s)	536
StyD4I	CCNGG	3 cut(s)	706, 719, 814
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	3 cut(s)	315, 634, 768
TaiI	ACGT	2 cut(s)	627, 862
TaqI	TCGA	1 cut(s)	422
TasI	AATT	6 cut(s)	31, 406, 611, 660, 744, 760
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	867
Tru1I	TTAA	2 cut(s)	428, 629
Tru9I	TTAA	2 cut(s)	428, 629
TscAI	CASTG	3 cut(s)	138, 519, 656
TseFI	GTSAC	2 cut(s)	117, 273
TseI	GCWGC	2 cut(s)	463, 598
Tsp45I	GTSAC	2 cut(s)	117, 273
TspDTI	ATGAA	4 cut(s)	82, 89, 469, 604
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	3 cut(s)	138, 519, 656
VpaK11BI	GGWCC	3 cut(s)	3, 541, 560
VspI	ATTAAT	1 cut(s)	428
XagI	CCTNNNNNAGG	1 cut(s)	487
XapI	RAATTY	3 cut(s)	31, 406, 611
XceI	RCATGY	1 cut(s)	550
XmaJI	CCTAGG	1 cut(s)	537
XmnI	GAANNNNTTC	2 cut(s)	80, 418
XspI	CTAG	3 cut(s)	100, 467, 538
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.