Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Forward (+)

34896995 .. 34897904

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1293600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGATCTTGTGCGTGTGCTCTTGTAGCGTGGAATTGTTAGTAGGGAAAGTGGCATTGGTGACCGGCGGAGCCATTGGTATTGGAGAAAGCATTGTGCGCCTGTTCCACAAACACGGTGCAAAAGTTTGTTTAGTCGATGTGCAGGACAACCTGGGCTTGCAAGTGTGTGAATCCCTCCACGGGGATCCAAACATTTGCTATCTCCATTGTGATGTCACGGTGGAGGATGATATTAGCCGTGCAGTTGATTTCACGGTCAATAAATATGGCTCACTGGATATCATGGTCAACAATGCTGGGGTGTCAGGTTCACCTTGTCCCGACATCCGTGATGCGGACTTATCTGAGTTTCAGAAGGTGTTTGATATTAATGTAAAGGGAGTCTTCCTCGGAATGAAGCACGCAGCCAGGGCAATGATCCCCCGGAAAAAGGGCAGTATAGTTTCTCTTTCCAGTGTTGCAAGTGCTGTGGCAGGCCTTGGACCACATGCATACACAGGGTCCAAGCATGCTGTATTGGGGCTTACCAAAAACGTTGCAGCTGAGCTTGGGAATCATGGGATACGCGTTAACTGCGTTTCTCCTTATGCAGTTGCGACGAATTTGGCATTGGCTCACTTGCCCGAGGAAGAAAGAACAGAAGATGCCTGGACAGGTTTCCGTACTTTTGTAGCGAATAACGCCAACTTGCAAGGAGTGGAATTGACAGTTGATGATGTAGCCAATGCTGTGCTGTTCTTGGCAAGTGATGAGTCCAAGTATATAAGTGGCGATAATCTCATGCTTGATGGGGGCTTCACTGCTGTGAATCACTCATTGAGAGTCTTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

278

Amino Acids

29.4

Weight (kDa)

5.64

Isoelectric Point (pI)

23.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	16 - 203	4.6e-52	short chain dehydrogenase
KR	PF08659	18 - 172	4.8e-07	KR domain
adh_short_C2	PF13561	24 - 267	3.6e-61	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	567
AciI	CCGC	2 cut(s)	66, 335
AclI	AACGTT	1 cut(s)	534
AclWI	GGATC	3 cut(s)	179, 192, 412
AcsI	RAATTY	1 cut(s)	601
AfaI	GTAC	1 cut(s)	664
AfiI	CCNNNNNNNGG	4 cut(s)	180, 181, 334, 430
AflIII	ACRYGT	1 cut(s)	565
AjnI	CCWGG	3 cut(s)	150, 407, 647
AjuI	GAANNNNNNNTTGG	4 cut(s)	38, 70, 593, 625
AleI	CACNNNNGTG	1 cut(s)	803
AluBI	AGCT	2 cut(s)	542, 547
AluI	AGCT	2 cut(s)	542, 547
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	3 cut(s)	179, 192, 412
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	2 cut(s)	404, 539
ApoI	RAATTY	1 cut(s)	601
AseI	ATTAAT	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	482, 501
AsuC2I	CCSGG	1 cut(s)	424
AsuHPI	GGTGA	2 cut(s)	70, 303
AvaI	CYCGRG	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	482, 501
BamHI	GGATCC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	416, 551
BccI	CCATC	1 cut(s)	782
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	3 cut(s)	152, 409, 649
BciVI	GTATCC	1 cut(s)	555
BcnI	CCSGG	1 cut(s)	424
BfuI	GTATCC	1 cut(s)	555
BisI	GCNGC	2 cut(s)	405, 540
BlpI	GCTNAGC	1 cut(s)	543
BlsI	GCNGC	2 cut(s)	406, 541
Bme1390I	CCNGG	4 cut(s)	152, 409, 424, 649
Bme18I	GGWCC	2 cut(s)	482, 501
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	2 cut(s)	482, 501
BmiI	GGNNCC	3 cut(s)	70, 186, 502
BmrFI	CCNGG	4 cut(s)	152, 409, 424, 649
BmsI	GCATC	2 cut(s)	322, 634
BpiI	GAAGAC	1 cut(s)	376
BplI	GAGNNNNNCTC	2 cut(s)	372, 404
Bpu1102I	GCTNAGC	1 cut(s)	543
BpuMI	CCSGG	1 cut(s)	424
BsaJI	CCNNGG	7 cut(s)	151, 178, 388, 408, 422, 478, 624
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 181, 334, 430
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	279, 453
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	3 cut(s)	152, 409, 649
BseDI	CCNNGG	7 cut(s)	151, 178, 388, 408, 422, 478, 624
BseGI	GGATG	2 cut(s)	232, 324
BseLI	CCNNNNNNNGG	4 cut(s)	180, 181, 334, 430
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	336, 534
BseNI	ACTGG	2 cut(s)	279, 453
BseXI	GCAGC	2 cut(s)	416, 551
BseYI	CCCAGC	1 cut(s)	296
BsgI	GTGCAG	2 cut(s)	161, 261
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	2 cut(s)	63, 424
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	4 cut(s)	180, 181, 334, 430
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	477
BsoBI	CYCGRG	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	3, 184, 417
Bsp1720I	GCTNAGC	1 cut(s)	543
BspACI	CCGC	2 cut(s)	66, 335
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	2 cut(s)	337, 535
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	3 cut(s)	70, 186, 502
BspPI	GGATC	3 cut(s)	179, 192, 412
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	279, 453
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	7 cut(s)	151, 178, 388, 408, 422, 478, 624
BssMI	GATC	3 cut(s)	3, 184, 417
BssT1I	CCWWGG	1 cut(s)	478
Bst2UI	CCWGG	3 cut(s)	152, 409, 649
Bst4CI	ACNGT	4 cut(s)	116, 220, 256, 709
BstC8I	GCNNGC	4 cut(s)	158, 402, 475, 510
BstDEI	CTNAG	2 cut(s)	345, 543
BstDSI	CCRYGG	1 cut(s)	178
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	232, 324
BstFNI	CGCG	1 cut(s)	567
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	3 cut(s)	6, 187, 420
BstMBI	GATC	3 cut(s)	3, 184, 417
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 96, 410, 573, 680
BstNI	CCWGG	3 cut(s)	152, 409, 649
BstNSI	RCATGY	2 cut(s)	491, 512
BstPI	GGTNACC	1 cut(s)	58
BstSCI	CCNGG	4 cut(s)	150, 407, 422, 647
BstUI	CGCG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	416, 551
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	477
BtgI	CCRYGG	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	232, 324
BtsI	GCAGTG	1 cut(s)	798
BtsIMutI	CAGTG	3 cut(s)	272, 460, 798
Cac8I	GCNNGC	4 cut(s)	158, 402, 475, 510
CfoI	GCGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	482, 501
Csp6I	GTAC	1 cut(s)	663
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CviAII	CATG	5 cut(s)	283, 488, 509, 557, 781
CviQI	GTAC	1 cut(s)	663
DdeI	CTNAG	2 cut(s)	345, 543
DpnI	GATC	3 cut(s)	5, 186, 419
DpnII	GATC	3 cut(s)	3, 184, 417
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	478
Eco147I	AGGCCT	1 cut(s)	477
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	2 cut(s)	482, 501
Eco88I	CYCGRG	1 cut(s)	623
Eco91I	GGTNACC	1 cut(s)	58
EcoO65I	GGTNACC	1 cut(s)	58
EcoRII	CCWGG	3 cut(s)	150, 407, 647
EcoRV	GATATC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	478
EcoT22I	ATGCAT	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	5 cut(s)	286, 491, 512, 560, 784
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	5 cut(s)	282, 487, 508, 556, 780
Fnu4HI	GCNGC	2 cut(s)	405, 540
FokI	GGATG	2 cut(s)	239, 311
Fsp4HI	GCNGC	2 cut(s)	405, 540
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	405, 540
GsaI	CCCAGC	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	2 cut(s)	63, 424
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	5 cut(s)	286, 491, 512, 560, 784
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	2 cut(s)	289, 571
HindII	GTYRAC	2 cut(s)	289, 571
HinfI	GANTC	6 cut(s)	170, 381, 553, 752, 808, 822
HpaI	GTTAAC	1 cut(s)	571
HpaII	CCGG	2 cut(s)	63, 424
HphI	GGTGA	2 cut(s)	70, 303
Hpy166II	GTNNAC	3 cut(s)	289, 311, 571
Hpy188I	TCNGA	3 cut(s)	346, 354, 392
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	3 cut(s)	289, 311, 571
Hpy99I	CGWCG	1 cut(s)	601
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	4 cut(s)	116, 220, 256, 709
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	9 cut(s)	119, 142, 160, 242, 461, 491, 539, 590, 691
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 96, 410, 573, 680
HpyF3I	CTNAG	2 cut(s)	345, 543
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	5 cut(s)	286, 491, 512, 560, 784
HspAI	GCGC	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	571
Kzo9I	GATC	3 cut(s)	3, 184, 417
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	2 cut(s)	416, 551
LweI	GCATC	2 cut(s)	322, 634
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	2 cut(s)	58, 214
MalI	GATC	3 cut(s)	5, 186, 419
MboI	GATC	3 cut(s)	3, 184, 417
MboII	GAAGA	3 cut(s)	376, 641, 653
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	3 cut(s)	32, 601, 701
MluI	ACGCGT	1 cut(s)	565
MlyI	GAGTC	3 cut(s)	390, 761, 831
MnlI	CCTC	4 cut(s)	185, 217, 398, 619
Mph1103I	ATGCAT	1 cut(s)	493
MseI	TTAA	2 cut(s)	369, 570
MslI	CAYNNNNRTG	2 cut(s)	210, 803
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	2 cut(s)	63, 424
MspR9I	CCNGG	4 cut(s)	152, 409, 424, 649
MvaI	CCWGG	3 cut(s)	152, 409, 649
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	5 cut(s)	24, 96, 410, 573, 680
NciI	CCSGG	1 cut(s)	424
NdeII	GATC	3 cut(s)	3, 184, 417
NlaIII	CATG	5 cut(s)	286, 491, 512, 560, 784
NlaIV	GGNNCC	3 cut(s)	70, 186, 502
NmuCI	GTSAC	2 cut(s)	58, 214
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	2 cut(s)	491, 512
OliI	CACNNNNGTG	1 cut(s)	803
PaeI	GCATGC	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	170, 553, 808
PkrI	GCNGC	2 cut(s)	406, 541
PleI	GAGTC	3 cut(s)	389, 760, 830
PpsI	GAGTC	3 cut(s)	389, 760, 830
PshBI	ATTAAT	1 cut(s)	369
Psp1406I	AACGTT	1 cut(s)	534
Psp6I	CCWGG	3 cut(s)	150, 407, 647
PspEI	GGTNACC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	3 cut(s)	150, 407, 647
PspN4I	GGNNCC	3 cut(s)	70, 186, 502
PspPI	GGNCC	2 cut(s)	482, 501
PsuI	RGATCY	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	1 cut(s)	664
RsaNI	GTAC	1 cut(s)	663
RseI	CAYNNNNRTG	2 cut(s)	210, 803
SaqAI	TTAA	2 cut(s)	369, 570
SatI	GCNGC	2 cut(s)	405, 540
Sau3AI	GATC	3 cut(s)	3, 184, 417
Sau96I	GGNCC	2 cut(s)	482, 501
SchI	GAGTC	3 cut(s)	390, 761, 831
ScrFI	CCNGG	4 cut(s)	152, 409, 424, 649
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	8 cut(s)	153, 310, 316, 360, 537, 544, 549, 658
SfaNI	GCATC	2 cut(s)	322, 634
SinI	GGWCC	2 cut(s)	482, 501
SmiMI	CAYNNNNRTG	2 cut(s)	210, 803
SphI	GCATGC	1 cut(s)	512
Sse9I	AATT	3 cut(s)	32, 601, 701
SseBI	AGGCCT	1 cut(s)	477
SsiI	CCGC	2 cut(s)	66, 335
StuI	AGGCCT	1 cut(s)	477
StyD4I	CCNGG	4 cut(s)	150, 407, 422, 647
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	4 cut(s)	116, 220, 256, 709
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	1 cut(s)	135
TasI	AATT	3 cut(s)	32, 601, 701
TfiI	GAWTC	3 cut(s)	170, 553, 808
Tru1I	TTAA	2 cut(s)	369, 570
Tru9I	TTAA	2 cut(s)	369, 570
TscAI	CASTG	3 cut(s)	279, 460, 805
TseFI	GTSAC	2 cut(s)	58, 214
TseI	GCWGC	2 cut(s)	404, 539
Tsp45I	GTSAC	2 cut(s)	58, 214
TspDTI	ATGAA	1 cut(s)	410
TspGWI	ACGGA	2 cut(s)	317, 650
TspRI	CASTG	3 cut(s)	279, 460, 805
VpaK11BI	GGWCC	2 cut(s)	482, 501
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	2 cut(s)	491, 512
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.