Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Reverse (-)

6448487 .. 6450694

Gene Structure 2208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G003460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCGCCATGCATGTAGTCCCGTTAAAATAAGTTCCTCATACAGAATATTGTTACTAGGGAAAGTTGCATTGGTGACCGGTGGAGCCACTGGGATTGGAGAGAGCATTGTCCGCCTATTCCACAAACAAGGTGCAAAAGTTTGCTTAGTTGATGTGCAGGACAACTTGGGATTGCAAGTCTCCGAGTCTCTTGGCGGCGACGCAAATGTTTGTTATTTCCATTGTGATGTCACAAAAGAAGCTGATGTTAGCGGTGCAGTTGATTTCACAGTCGGTAAGTATGGCACACTTGATATCATGGTCAACAATGCTGGGGTGTCAGGTTCACCCTGTCCTGATATCCGCAATGCAGACTTATCTGAATTTGAGAAGGTGTTCGATATTAATGTGAAGGGAGTTTTCCACGGAATGAAACACGCAGCTAGGACGATGATCCCCCTGAAAAAGGGTAGTATCATTTCTCTTTGCAGTGTTGCAAGCACTACAGGAGGCCTAGGACCGCATGCATACACAGGGTCCAAGCACGCTGTGTTGGGGCTGACCAAGAATGTTGCTGCTGAGCTTGGAATTCATGGCATACGTGTTAACTGTGTCTCTCCTTATGCAGTGGCGACTAATTTGGCTTTGGCTCACTTGGCTGAGGAAGAGAGAACCGAAGATGCCTGGACAGGGTTCCGGGATTTCGTAGGGAGACATGCCAATTTGCAGGGAGTGGAATTGACAGTTCATGATGTTGCAAATGCTGTGCTTTTCTTAGCAAGTGATGAGTCCAGGTATATAAGTGGGGATAATCTCATGATTGATGGTGGACTCACGTGCGTGAATCACTCGCTTAGAGTCTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

282

Amino Acids

29.91

Weight (kDa)

6.45

Isoelectric Point (pI)

23.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	21 - 208	1.5e-51	short chain dehydrogenase
KR	PF08659	23 - 180	1.8e-07	KR domain
adh_short_C2	PF13561	29 - 272	6.3e-59	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	112, 195, 252, 343, 500
AclWI	GGATC	1 cut(s)	427
AcsI	RAATTY	2 cut(s)	362, 567
AcuI	CTGAAG	1 cut(s)	826
AcvI	CACGTG	1 cut(s)	816
AdeI	CACNNNGTG	1 cut(s)	529
AfiI	CCNNNNNNNGG	2 cut(s)	445, 669
AflIII	ACRYGT	1 cut(s)	580
AgeI	ACCGGT	1 cut(s)	77
AjnI	CCWGG	2 cut(s)	662, 770
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AleI	CACNNNNGTG	1 cut(s)	818
AluBI	AGCT	3 cut(s)	242, 422, 562
AluI	AGCT	3 cut(s)	242, 422, 562
Alw26I	GTCTC	4 cut(s)	184, 192, 598, 685
AlwI	GGATC	1 cut(s)	427
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	419, 554
ApoI	RAATTY	2 cut(s)	362, 567
AseI	ATTAAT	1 cut(s)	384
AsiGI	ACCGGT	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	374
AspA2I	CCTAGG	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	497, 516
AsuC2I	CCSGG	1 cut(s)	677
AsuHPI	GGTGA	2 cut(s)	85, 318
AvaII	GGWCC	2 cut(s)	497, 516
AvrII	CCTAGG	1 cut(s)	493
BbrPI	CACGTG	1 cut(s)	816
BbsI	GAAGAC	1 cut(s)	832
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	2 cut(s)	431, 541
BccI	CCATC	1 cut(s)	797
BciT130I	CCWGG	2 cut(s)	664, 772
BcnI	CCSGG	1 cut(s)	677
BcoDI	GTCTC	4 cut(s)	184, 192, 598, 685
BfaI	CTAG	3 cut(s)	56, 423, 494
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	3 cut(s)	196, 420, 555
BlnI	CCTAGG	1 cut(s)	493
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	3 cut(s)	197, 421, 556
Bme1390I	CCNGG	3 cut(s)	664, 677, 772
Bme18I	GGWCC	2 cut(s)	497, 516
BmgT120I	GGNCC	2 cut(s)	497, 516
BmiI	GGNNCC	3 cut(s)	85, 517, 674
BmrFI	CCNGG	3 cut(s)	664, 677, 772
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	649
BmuI	ACTGGG	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	832
Bpu10I	CCTNAGC	1 cut(s)	639
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuMI	CCSGG	1 cut(s)	677
BsaAI	YACGTR	2 cut(s)	581, 816
BsaJI	CCNNGG	2 cut(s)	403, 493
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 669
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	2 cut(s)	664, 772
BseDI	CCNNGG	2 cut(s)	403, 493
BseLI	CCNNNNNNNGG	2 cut(s)	445, 669
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	549, 630
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	431, 541
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	2 cut(s)	176, 276
BshFI	GGCC	1 cut(s)	492
BshTI	ACCGGT	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	78, 676
BslFI	GGGAC	1 cut(s)	3
BslI	CCNNNNNNNGG	2 cut(s)	445, 669
BsmAI	GTCTC	4 cut(s)	184, 192, 598, 685
BsmFI	GGGAC	1 cut(s)	3
BsnI	GGCC	1 cut(s)	492
Bsp143I	GATC	1 cut(s)	432
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	5 cut(s)	112, 195, 252, 343, 500
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	2 cut(s)	550, 631
BspHI	TCATGA	2 cut(s)	727, 795
BspLI	GGNNCC	3 cut(s)	85, 517, 674
BspPI	GGATC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	403, 493
BssMI	GATC	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	493
Bst2UI	CCWGG	2 cut(s)	664, 772
Bst4CI	ACNGT	3 cut(s)	271, 590, 724
Bst6I	CTCTTC	1 cut(s)	639
BstBAI	YACGTR	2 cut(s)	581, 816
BstC8I	GCNNGC	3 cut(s)	478, 504, 525
BstDEI	CTNAG	5 cut(s)	145, 558, 639, 754, 833
BstDSI	CCRYGG	1 cut(s)	403
BstEII	GGTNACC	1 cut(s)	73
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	435
BstMAI	GTCTC	4 cut(s)	184, 192, 598, 685
BstMBI	GATC	1 cut(s)	432
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 635
BstNI	CCWGG	2 cut(s)	664, 772
BstNSI	RCATGY	3 cut(s)	15, 506, 698
BstPI	GGTNACC	1 cut(s)	73
BstSCI	CCNGG	3 cut(s)	662, 675, 770
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	431, 541
BstV2I	GAAGAC	1 cut(s)	832
BsuRI	GGCC	1 cut(s)	492
BtgI	CCRYGG	1 cut(s)	403
BtsI	GCAGTG	2 cut(s)	475, 612
BtsIMutI	CAGTG	3 cut(s)	87, 475, 612
Cac8I	GCNNGC	3 cut(s)	478, 504, 525
CciI	TCATGA	2 cut(s)	727, 795
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	497, 516
CseI	GACGC	1 cut(s)	209
CspAI	ACCGGT	1 cut(s)	77
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	8 cut(s)	8, 12, 298, 503, 572, 695, 728, 796
CviJI	RGCY	9 cut(s)	86, 242, 422, 492, 538, 562, 623, 629, 638
CviKI_1	RGCY	9 cut(s)	86, 242, 422, 492, 538, 562, 623, 629, 638
DdeI	CTNAG	5 cut(s)	145, 558, 639, 754, 833
DpnI	GATC	1 cut(s)	434
DpnII	GATC	1 cut(s)	432
DraIII	CACNNNGTG	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	493
Eco147I	AGGCCT	1 cut(s)	492
Eco32I	GATATC	2 cut(s)	295, 340
Eco47I	GGWCC	2 cut(s)	497, 516
Eco57I	CTGAAG	1 cut(s)	826
Eco72I	CACGTG	1 cut(s)	816
Eco91I	GGTNACC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoO65I	GGTNACC	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	662, 770
EcoRV	GATATC	2 cut(s)	295, 340
EcoT14I	CCWWGG	1 cut(s)	493
EcoT22I	ATGCAT	2 cut(s)	13, 508
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	8 cut(s)	11, 15, 301, 506, 575, 698, 731, 799
FaqI	GGGAC	1 cut(s)	3
FatI	CATG	8 cut(s)	7, 11, 297, 502, 571, 694, 727, 795
Fnu4HI	GCNGC	3 cut(s)	196, 420, 555
Fsp4HI	GCNGC	3 cut(s)	196, 420, 555
FspBI	CTAG	3 cut(s)	56, 423, 494
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	3 cut(s)	196, 420, 555
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	492
HapII	CCGG	2 cut(s)	78, 676
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	8 cut(s)	11, 15, 301, 506, 575, 698, 731, 799
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	2 cut(s)	304, 586
HindII	GTYRAC	2 cut(s)	304, 586
HinfI	GANTC	5 cut(s)	185, 767, 810, 823, 837
HpaI	GTTAAC	1 cut(s)	586
HpaII	CCGG	2 cut(s)	78, 676
HphI	GGTGA	2 cut(s)	85, 318
Hpy166II	GTNNAC	4 cut(s)	304, 326, 586, 809
Hpy188I	TCNGA	3 cut(s)	184, 361, 845
Hpy188III	TCNNGA	3 cut(s)	335, 728, 796
Hpy8I	GTNNAC	4 cut(s)	304, 326, 586, 809
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	364, 385
HpyCH4III	ACNGT	3 cut(s)	271, 590, 724
HpyCH4IV	ACGT	2 cut(s)	580, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 635
HpyF3I	CTNAG	5 cut(s)	145, 558, 639, 754, 833
HpySE526I	ACGT	2 cut(s)	580, 815
Hsp92II	CATG	8 cut(s)	11, 15, 301, 506, 575, 698, 731, 799
HspAI	GCGC	1 cut(s)	4
KspAI	GTTAAC	1 cut(s)	586
Kzo9I	GATC	1 cut(s)	432
LmnI	GCTCC	1 cut(s)	83
Lsp1109I	GCAGC	2 cut(s)	431, 541
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	3 cut(s)	56, 423, 494
MaeII	ACGT	2 cut(s)	580, 815
MaeIII	GTNAC	3 cut(s)	51, 73, 229
MalI	GATC	1 cut(s)	434
MboI	GATC	1 cut(s)	432
MboII	GAAGA	3 cut(s)	656, 668, 832
MluCI	AATT	5 cut(s)	362, 567, 616, 700, 716
MlyI	GAGTC	4 cut(s)	194, 776, 804, 846
MnlI	CCTC	3 cut(s)	46, 482, 634
Mph1103I	ATGCAT	2 cut(s)	13, 508
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	3 cut(s)	24, 384, 585
MslI	CAYNNNNRTG	2 cut(s)	225, 818
MspI	CCGG	2 cut(s)	78, 676
MspR9I	CCNGG	3 cut(s)	664, 677, 772
MvaI	CCWGG	2 cut(s)	664, 772
MwoI	GCNNNNNNNGC	2 cut(s)	111, 635
NciI	CCSGG	1 cut(s)	677
NdeII	GATC	1 cut(s)	432
NlaIII	CATG	8 cut(s)	11, 15, 301, 506, 575, 698, 731, 799
NlaIV	GGNNCC	3 cut(s)	85, 517, 674
NmuCI	GTSAC	2 cut(s)	73, 229
NsiI	ATGCAT	2 cut(s)	13, 508
NspI	RCATGY	3 cut(s)	15, 506, 698
OliI	CACNNNNGTG	1 cut(s)	818
PaeI	GCATGC	1 cut(s)	506
PagI	TCATGA	2 cut(s)	727, 795
PceI	AGGCCT	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	823
PfoI	TCCNGGA	1 cut(s)	675
PinAI	ACCGGT	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	197, 421, 556
PleI	GAGTC	4 cut(s)	193, 775, 804, 845
PmaCI	CACGTG	1 cut(s)	816
PmlI	CACGTG	1 cut(s)	816
PpsI	GAGTC	4 cut(s)	193, 775, 804, 845
Ppu21I	YACGTR	2 cut(s)	581, 816
PshBI	ATTAAT	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	662, 770
PspCI	CACGTG	1 cut(s)	816
PspEI	GGTNACC	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	2 cut(s)	662, 770
PspN4I	GGNNCC	3 cut(s)	85, 517, 674
PspPI	GGNCC	2 cut(s)	497, 516
RseI	CAYNNNNRTG	2 cut(s)	225, 818
SaqAI	TTAA	3 cut(s)	24, 384, 585
SatI	GCNGC	3 cut(s)	196, 420, 555
Sau3AI	GATC	1 cut(s)	432
Sau96I	GGNCC	2 cut(s)	497, 516
SchI	GAGTC	4 cut(s)	194, 776, 804, 846
ScrFI	CCNGG	3 cut(s)	664, 677, 772
SetI	ASST	9 cut(s)	133, 244, 325, 375, 424, 564, 583, 776, 818
SfaNI	GCATC	1 cut(s)	649
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	2 cut(s)	497, 516
SmiMI	CAYNNNNRTG	2 cut(s)	225, 818
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	5 cut(s)	362, 567, 616, 700, 716
SseBI	AGGCCT	1 cut(s)	492
SsiI	CCGC	5 cut(s)	112, 195, 252, 343, 500
SspI	AATATT	1 cut(s)	48
SspMI	CTAG	3 cut(s)	56, 423, 494
StuI	AGGCCT	1 cut(s)	492
StyD4I	CCNGG	3 cut(s)	662, 675, 770
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	3 cut(s)	271, 590, 724
TaiI	ACGT	2 cut(s)	583, 818
TaqI	TCGA	1 cut(s)	378
TasI	AATT	5 cut(s)	362, 567, 616, 700, 716
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	823
Tru1I	TTAA	3 cut(s)	24, 384, 585
Tru9I	TTAA	3 cut(s)	24, 384, 585
TscAI	CASTG	3 cut(s)	94, 475, 612
TseFI	GTSAC	2 cut(s)	73, 229
TseI	GCWGC	2 cut(s)	419, 554
Tsp45I	GTSAC	2 cut(s)	73, 229
TspDTI	ATGAA	3 cut(s)	425, 560, 716
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	3 cut(s)	94, 475, 612
VpaK11BI	GGWCC	2 cut(s)	497, 516
VspI	ATTAAT	1 cut(s)	384
XagI	CCTNNNNNAGG	1 cut(s)	443
XapI	RAATTY	2 cut(s)	362, 567
XceI	RCATGY	3 cut(s)	15, 506, 698
XmaJI	CCTAGG	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	3 cut(s)	56, 423, 494
Zsp2I	ATGCAT	2 cut(s)	13, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.