Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Reverse (-)

1901105 .. 1901953

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g02330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTGGATAGGTTTCCCTAATGGCTGCTCAGTTCTTTACCTTCTCCTCAGGTTAGTAGGGAAAGTGGCACTGGTGACCGGCGGAGCCACTGGCATTGGAGAAAGCATTGTGCGCCTGCTCCACAAGCATGGCGCAAAAGTTTGTTTAGTTGATGTGCAGGACAACCTCGGCTTACAAGTGTGCGAATCCCTCAACGGAGATCCAAACATTTGTTATCTTCATTGTGATGTCACGGTAGAGGATGATGTTAGCCGTGCAGTTGATTTCACTGTCGATAAATATGGCACGCTGGATATCATAGTCAACAACGCTGGGGTGACAGGTTCGCCTTGTCCAGACATCCGCAATGCAGACTTATCTGAGTTTCAGAAAGTGTTTGATATTAACGTGAAGGGAGTGTTCCTCGGAATGAAGCACGCAGCTAGGGCAATGATCCCGCAGAAAAAGGGCAGCATAGTTTCTCTTTCCAGTGTTTCAAGTGTTCAAGGAGGCATTGGACCACATGCATACACAGGGTCCAAGCATGCTGTGTTGGGGCTGACCAAGAACGTTGCAGCTGAGCTTGGGAATCATGGGATACGCGTTAACTGCGTTTCTCCTTATGCAGTTGCGACTAATTTGGCTTTGGCTCACCTGCCTGAGGATGAGAGAACCGAAGATGCCTGGACAGGTTTCCGATCTTTTATATCGAAAAATGCCAACTTGCAAGGAGTGGAACTGACAGTTGATGATGTAGCTAATGCTGTGCTCTTTTTGGCAAGTGACGAGTCCAAGTATATAAGTGGGGATAATCTCATGATCGACGGGGGCTTCACTTGTGTGAATCACTCACTGAGAGTCTTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

283

Amino Acids

30.08

Weight (kDa)

5.82

Isoelectric Point (pI)

20.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	21 - 208	2.7e-53	short chain dehydrogenase
KR	PF08659	23 - 178	1.2e-10	KR domain
adh_short_C2	PF13561	29 - 272	1.1e-61	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	642
Acc36I	ACCTGC	1 cut(s)	642
AccII	CGCG	1 cut(s)	582
AciI	CCGC	3 cut(s)	81, 343, 437
AclI	AACGTT	1 cut(s)	549
AclWI	GGATC	2 cut(s)	194, 427
AfiI	CCNNNNNNNGG	1 cut(s)	640
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	2 cut(s)	477, 485
AjnI	CCWGG	1 cut(s)	662
AleI	CACNNNNGTG	1 cut(s)	818
AluBI	AGCT	4 cut(s)	422, 557, 562, 737
AluI	AGCT	4 cut(s)	422, 557, 562, 737
Alw21I	GWGCWC	1 cut(s)	750
AlwI	GGATC	2 cut(s)	194, 427
ApeKI	GCWGC	4 cut(s)	24, 419, 450, 554
AspLEI	GCGC	2 cut(s)	114, 134
AspS9I	GGNCC	2 cut(s)	497, 516
AsuHPI	GGTGA	3 cut(s)	85, 328, 623
AvaII	GGWCC	2 cut(s)	497, 516
AxyI	CCTNAGG	2 cut(s)	47, 639
Bbv12I	GWGCWC	1 cut(s)	750
BbvI	GCAGC	4 cut(s)	11, 431, 462, 566
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	664
BciVI	GTATCC	1 cut(s)	570
BfaI	CTAG	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	642
BfuI	GTATCC	1 cut(s)	570
BisI	GCNGC	4 cut(s)	25, 420, 451, 555
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	4 cut(s)	26, 421, 452, 556
Bme1390I	CCNGG	1 cut(s)	664
Bme18I	GGWCC	2 cut(s)	497, 516
BmgT120I	GGNCC	2 cut(s)	497, 516
BmiI	GGNNCC	2 cut(s)	85, 517
BmrFI	CCNGG	1 cut(s)	664
BmsI	GCATC	1 cut(s)	649
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
Bpu1102I	GCTNAGC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	166, 403
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	3 cut(s)	75, 94, 468
Bse21I	CCTNAGG	2 cut(s)	47, 639
Bse3DI	GCAATG	2 cut(s)	352, 435
BseBI	CCWGG	1 cut(s)	664
BseDI	CCNNGG	2 cut(s)	166, 403
BseGI	GGATG	3 cut(s)	247, 339, 649
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMI	GCAATG	2 cut(s)	352, 435
BseMII	CTCAG	6 cut(s)	42, 61, 351, 549, 630, 824
BseNI	ACTGG	3 cut(s)	75, 94, 468
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	4 cut(s)	11, 431, 462, 566
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	2 cut(s)	176, 276
Bsh1236I	CGCG	1 cut(s)	582
BsiHKAI	GWGCWC	1 cut(s)	750
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	640
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	4 cut(s)	199, 432, 677, 798
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	3 cut(s)	81, 343, 437
BspCNI	CTCAG	6 cut(s)	41, 60, 352, 550, 631, 825
BspFNI	CGCG	1 cut(s)	582
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	2 cut(s)	85, 517
BspMI	ACCTGC	1 cut(s)	642
BspPI	GGATC	2 cut(s)	194, 427
BsrDI	GCAATG	2 cut(s)	352, 435
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	75, 94, 468
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	166, 403
BssMI	GATC	4 cut(s)	199, 432, 677, 798
Bst2UI	CCWGG	1 cut(s)	664
Bst4CI	ACNGT	3 cut(s)	235, 271, 724
BstC8I	GCNNGC	4 cut(s)	116, 287, 417, 525
BstDEI	CTNAG	6 cut(s)	28, 47, 360, 558, 639, 833
BstEII	GGTNACC	1 cut(s)	73
BstENI	CCTNNNNNAGG	1 cut(s)	638
BstF5I	GGATG	3 cut(s)	247, 339, 649
BstFNI	CGCG	1 cut(s)	582
BstHHI	GCGC	2 cut(s)	114, 134
BstKTI	GATC	4 cut(s)	202, 435, 680, 801
BstMBI	GATC	4 cut(s)	199, 432, 677, 798
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 124, 425, 588
BstNI	CCWGG	1 cut(s)	664
BstNSI	RCATGY	2 cut(s)	506, 527
BstPI	GGTNACC	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	662
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	4 cut(s)	11, 431, 462, 566
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	199
Bsu36I	CCTNAGG	2 cut(s)	47, 639
BsuI	GTATCC	1 cut(s)	570
BtsCI	GGATG	3 cut(s)	247, 339, 649
BtsIMutI	CAGTG	5 cut(s)	68, 87, 267, 475, 830
BveI	ACCTGC	1 cut(s)	642
Cac8I	GCNNGC	4 cut(s)	116, 287, 417, 525
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	2 cut(s)	114, 134
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	497, 516
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	5 cut(s)	128, 503, 524, 572, 796
DdeI	CTNAG	6 cut(s)	28, 47, 360, 558, 639, 833
DpnI	GATC	4 cut(s)	201, 434, 679, 800
DpnII	GATC	4 cut(s)	199, 432, 677, 798
EciI	GGCGGA	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	497, 516
Eco81I	CCTNAGG	2 cut(s)	47, 639
Eco91I	GGTNACC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	638
EcoO65I	GGTNACC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	662
EcoRV	GATATC	1 cut(s)	295
EcoT22I	ATGCAT	1 cut(s)	508
FaeI	CATG	5 cut(s)	131, 506, 527, 575, 799
FatI	CATG	5 cut(s)	127, 502, 523, 571, 795
FauI	CCCGC	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	25, 420, 451, 555
FokI	GGATG	3 cut(s)	254, 326, 656
Fsp4HI	GCNGC	4 cut(s)	25, 420, 451, 555
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	2 cut(s)	113, 133
GluI	GCNGC	4 cut(s)	25, 420, 451, 555
GsaI	CCCAGC	1 cut(s)	315
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	2 cut(s)	114, 134
Hin1II	CATG	5 cut(s)	131, 506, 527, 575, 799
Hin6I	GCGC	2 cut(s)	112, 132
HinP1I	GCGC	2 cut(s)	112, 132
HincII	GTYRAC	2 cut(s)	304, 586
HindII	GTYRAC	2 cut(s)	304, 586
HinfI	GANTC	5 cut(s)	185, 568, 767, 823, 837
HpaI	GTTAAC	1 cut(s)	586
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	3 cut(s)	85, 328, 623
Hpy166II	GTNNAC	2 cut(s)	304, 586
Hpy188I	TCNGA	4 cut(s)	361, 369, 407, 677
Hpy188III	TCNNGA	2 cut(s)	335, 796
Hpy8I	GTNNAC	2 cut(s)	304, 586
Hpy99I	CGWCG	1 cut(s)	806
HpyAV	CCTTC	2 cut(s)	50, 385
HpyCH4III	ACNGT	3 cut(s)	235, 271, 724
HpyCH4IV	ACGT	2 cut(s)	387, 549
HpyCH4V	TGCA	7 cut(s)	157, 257, 350, 506, 554, 605, 706
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 124, 425, 588
HpyF3I	CTNAG	6 cut(s)	28, 47, 360, 558, 639, 833
HpySE526I	ACGT	2 cut(s)	387, 549
Hsp92II	CATG	5 cut(s)	131, 506, 527, 575, 799
HspAI	GCGC	2 cut(s)	112, 132
KspAI	GTTAAC	1 cut(s)	586
Kzo9I	GATC	4 cut(s)	199, 432, 677, 798
LmnI	GCTCC	2 cut(s)	83, 123
Lsp1109I	GCAGC	4 cut(s)	11, 431, 462, 566
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	2 cut(s)	387, 549
MaeIII	GTNAC	4 cut(s)	73, 229, 316, 761
MalI	GATC	4 cut(s)	201, 434, 679, 800
MboI	GATC	4 cut(s)	199, 432, 677, 798
MboII	GAAGA	2 cut(s)	209, 668
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	1 cut(s)	616
MluI	ACGCGT	1 cut(s)	580
MlyI	GAGTC	2 cut(s)	776, 846
MnlI	CCTC	7 cut(s)	56, 176, 200, 232, 413, 482, 634
Mph1103I	ATGCAT	1 cut(s)	508
MseI	TTAA	2 cut(s)	384, 585
MslI	CAYNNNNRTG	3 cut(s)	126, 225, 818
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	664
MvaI	CCWGG	1 cut(s)	664
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	4 cut(s)	111, 124, 425, 588
NdeII	GATC	4 cut(s)	199, 432, 677, 798
NlaIII	CATG	5 cut(s)	131, 506, 527, 575, 799
NlaIV	GGNNCC	2 cut(s)	85, 517
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	4 cut(s)	73, 229, 316, 761
NsiI	ATGCAT	1 cut(s)	508
NspI	RCATGY	2 cut(s)	506, 527
OliI	CACNNNNGTG	1 cut(s)	818
PaeI	GCATGC	1 cut(s)	527
PagI	TCATGA	1 cut(s)	795
PaqCI	CACCTGC	1 cut(s)	642
PfeI	GAWTC	3 cut(s)	185, 568, 823
PkrI	GCNGC	4 cut(s)	26, 421, 452, 556
PleI	GAGTC	2 cut(s)	775, 845
PpsI	GAGTC	2 cut(s)	775, 845
Psp1406I	AACGTT	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	662
PspEI	GGTNACC	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	662
PspN4I	GGNNCC	2 cut(s)	85, 517
PspPI	GGNCC	2 cut(s)	497, 516
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	557
RseI	CAYNNNNRTG	3 cut(s)	126, 225, 818
SaqAI	TTAA	2 cut(s)	384, 585
SatI	GCNGC	4 cut(s)	25, 420, 451, 555
Sau3AI	GATC	4 cut(s)	199, 432, 677, 798
Sau96I	GGNCC	2 cut(s)	497, 516
SchI	GAGTC	2 cut(s)	776, 846
ScrFI	CCNGG	1 cut(s)	664
SduI	GDGCHC	1 cut(s)	750
SfaNI	GCATC	1 cut(s)	649
SinI	GGWCC	2 cut(s)	497, 516
SmiMI	CAYNNNNRTG	3 cut(s)	126, 225, 818
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	1 cut(s)	616
SsiI	CCGC	3 cut(s)	81, 343, 437
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	662
TaaI	ACNGT	3 cut(s)	235, 271, 724
TaiI	ACGT	2 cut(s)	390, 552
TaqI	TCGA	3 cut(s)	273, 689, 801
TasI	AATT	1 cut(s)	616
TfiI	GAWTC	3 cut(s)	185, 568, 823
Tru1I	TTAA	2 cut(s)	384, 585
Tru9I	TTAA	2 cut(s)	384, 585
TscAI	CASTG	5 cut(s)	75, 94, 274, 475, 837
TseFI	GTSAC	4 cut(s)	73, 229, 316, 761
TseI	GCWGC	4 cut(s)	24, 419, 450, 554
Tsp45I	GTSAC	4 cut(s)	73, 229, 316, 761
TspDTI	ATGAA	2 cut(s)	209, 425
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	5 cut(s)	75, 94, 274, 475, 837
VpaK11BI	GGWCC	2 cut(s)	497, 516
XagI	CCTNNNNNAGG	1 cut(s)	638
XceI	RCATGY	2 cut(s)	506, 527
XspI	CTAG	1 cut(s)	423
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.