Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Reverse (-)

2665536 .. 2667704

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCCATGGATGAAGTTCCAAGCCGGAGGTTACTAGGGAAAGTTGCATTGGTGACTGGTGGAGCCACTGGTATTGGAGAAAGCATTGTACGCCTATTCCACAAACATGGGGCAAAAGTTTGCTTAGTTGATGTGCAGGACAACCTGGGATTGCAGGTCTGCGAGTCGCTTGGCGGTGACGCAAATGTTAGTTATTTCCATTGTGATGTCACAAAAGAAGCTGATGTTAGTGGCGCAGTTGATTTCACAGTTGATAAGTATGGCACACTTGATATCATGGTCAACAATGCTGGGGTATCAGGTTCATCCTGTCCCGATATCCGCAATGTAGACTTATCTGAATTTCAGAAGGTGTTCGATATTAATGTGAAGGGAGTTTTCCACGGAATGAAACATGCAGCCGGGACGATGATCCCACGGAAAAAGGGTAGTATCATTTCTCTTTGCAGTGTTTCAAGCACTACAGGAGGCATAGGACCGCATGCATACACAGGTTCCAAGCACGCTGTGTTGGGGCTGACAAAGAATGTTGCTGCTGAGCTTGGAATTCATGGCATACGTGTTAATTGTGTCTCCCCTTATGCAGTGGCAACTAATTTGGCTTTGGCTCATTTAATCGAGGAGGAGAGAACAGAAGATGCCTGGGCAGGGTTTCGGGATTTCGTAGGCAGAAATGCCAATTTGCAGGGAGTGGAGTTGACAGTCGATGATGTTGCAAATGCTGTGCTCTTCTTAGCAAGTGATGAGTCCAGGTATATAAGTGGGGATAATCTCATGATTGATGGTGGATTCACGAGCGTGAATCACTCGCTTAGAGTCTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

276

Amino Acids

29.2

Weight (kDa)

5.77

Isoelectric Point (pI)

23.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	14 - 201	5.2e-52	short chain dehydrogenase
KR	PF08659	16 - 173	8.7e-09	KR domain
adh_short_C2	PF13561	22 - 265	3.2e-60	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	3 cut(s)	174, 322, 479
AclWI	GGATC	1 cut(s)	406
AcsI	RAATTY	2 cut(s)	341, 546
AcuI	CTGAAG	1 cut(s)	805
AdeI	CACNNNGTG	1 cut(s)	508
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	648
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	1 cut(s)	456
AjnI	CCWGG	3 cut(s)	144, 641, 749
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AleI	CACNNNNGTG	1 cut(s)	797
AluBI	AGCT	2 cut(s)	221, 541
AluI	AGCT	2 cut(s)	221, 541
Alw21I	GWGCWC	1 cut(s)	729
Alw26I	GTCTC	1 cut(s)	577
AlwI	GGATC	1 cut(s)	406
ApeKI	GCWGC	2 cut(s)	398, 533
ApoI	RAATTY	2 cut(s)	341, 546
AseI	ATTAAT	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	476
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	64, 188
AvaII	GGWCC	1 cut(s)	476
BauI	CACGAG	1 cut(s)	793
BbsI	GAAGAC	1 cut(s)	811
Bbv12I	GWGCWC	1 cut(s)	729
BbvI	GCAGC	2 cut(s)	410, 520
BccI	CCATC	1 cut(s)	776
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BciT130I	CCWGG	3 cut(s)	146, 643, 751
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	2 cut(s)	399, 534
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	2 cut(s)	400, 535
Bme1390I	CCNGG	4 cut(s)	146, 403, 643, 751
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	2 cut(s)	64, 496
BmrFI	CCNGG	4 cut(s)	146, 403, 643, 751
BmsI	GCATC	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	811
Bpu1102I	GCTNAGC	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	403
BsaAI	YACGTR	1 cut(s)	560
BsaJI	CCNNGG	5 cut(s)	6, 145, 382, 416, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	648
Bse1I	ACTGG	2 cut(s)	61, 73
Bse3DI	GCAATG	1 cut(s)	331
BseBI	CCWGG	3 cut(s)	146, 643, 751
BseDI	CCNNGG	5 cut(s)	6, 145, 382, 416, 642
BseGI	GGATG	2 cut(s)	16, 305
BseLI	CCNNNNNNNGG	1 cut(s)	648
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	2 cut(s)	61, 73
BseRI	GAGGAG	2 cut(s)	635, 638
BseXI	GCAGC	2 cut(s)	410, 520
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	729
BsiSI	CCGG	2 cut(s)	25, 402
BslFI	GGGAC	2 cut(s)	297, 418
BslI	CCNNNNNNNGG	1 cut(s)	648
BsmAI	GTCTC	1 cut(s)	577
BsmFI	GGGAC	2 cut(s)	297, 418
Bsp1286I	GDGCHC	1 cut(s)	729
Bsp143I	GATC	1 cut(s)	411
Bsp1720I	GCTNAGC	1 cut(s)	537
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	3 cut(s)	174, 322, 479
BspCNI	CTCAG	1 cut(s)	529
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	2 cut(s)	64, 496
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	406
BspQI	GCTCTTC	1 cut(s)	734
BsrDI	GCAATG	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	61, 73
BssECI	CCNNGG	5 cut(s)	6, 145, 382, 416, 642
BssMI	GATC	1 cut(s)	411
BssSI	CACGAG	1 cut(s)	793
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	793
Bst2UI	CCWGG	3 cut(s)	146, 643, 751
Bst4CI	ACNGT	2 cut(s)	250, 703
Bst6I	CTCTTC	1 cut(s)	734
BstBAI	YACGTR	1 cut(s)	560
BstC8I	GCNNGC	2 cut(s)	483, 504
BstDEI	CTNAG	4 cut(s)	124, 537, 733, 812
BstDSI	CCRYGG	3 cut(s)	6, 382, 416
BstF5I	GGATG	2 cut(s)	16, 305
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNI	CCWGG	3 cut(s)	146, 643, 751
BstNSI	RCATGY	2 cut(s)	398, 485
BstSCI	CCNGG	4 cut(s)	144, 401, 641, 749
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	410, 520
BstV2I	GAAGAC	1 cut(s)	811
BstXI	CCANNNNNNTGG	1 cut(s)	107
BtgI	CCRYGG	3 cut(s)	6, 382, 416
BtsCI	GGATG	2 cut(s)	16, 305
BtsI	GCAGTG	2 cut(s)	454, 591
BtsIMutI	CAGTG	3 cut(s)	66, 454, 591
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	483, 504
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	476
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	89
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	7 cut(s)	7, 107, 277, 395, 482, 551, 775
CviJI	RGCY	8 cut(s)	24, 65, 221, 401, 517, 541, 602, 608
CviKI_1	RGCY	8 cut(s)	24, 65, 221, 401, 517, 541, 602, 608
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	4 cut(s)	124, 537, 733, 812
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
DraIII	CACNNNGTG	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	734
EarI	CTCTTC	1 cut(s)	734
Eco130I	CCWWGG	1 cut(s)	6
Eco32I	GATATC	2 cut(s)	274, 319
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	805
EcoRI	GAATTC	1 cut(s)	546
EcoRII	CCWGG	3 cut(s)	144, 641, 749
EcoRV	GATATC	2 cut(s)	274, 319
EcoT14I	CCWWGG	1 cut(s)	6
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	7 cut(s)	10, 110, 280, 398, 485, 554, 778
FaqI	GGGAC	2 cut(s)	297, 418
FatI	CATG	7 cut(s)	6, 106, 276, 394, 481, 550, 774
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	399, 534
FokI	GGATG	2 cut(s)	23, 292
Fsp4HI	GCNGC	2 cut(s)	399, 534
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	2 cut(s)	399, 534
GsaI	CCCAGC	1 cut(s)	294
HapII	CCGG	2 cut(s)	25, 402
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	7 cut(s)	10, 110, 280, 398, 485, 554, 778
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HincII	GTYRAC	2 cut(s)	283, 699
HindII	GTYRAC	2 cut(s)	283, 699
HinfI	GANTC	5 cut(s)	164, 746, 789, 802, 816
HpaII	CCGG	2 cut(s)	25, 402
HphI	GGTGA	2 cut(s)	64, 188
Hpy166II	GTNNAC	3 cut(s)	283, 331, 699
Hpy188I	TCNGA	3 cut(s)	340, 348, 824
Hpy188III	TCNNGA	4 cut(s)	314, 656, 775, 793
Hpy8I	GTNNAC	3 cut(s)	283, 331, 699
HpyAV	CCTTC	2 cut(s)	343, 364
HpyCH4III	ACNGT	2 cut(s)	250, 703
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	9 cut(s)	47, 136, 154, 398, 447, 485, 584, 685, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	4 cut(s)	124, 537, 733, 812
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	7 cut(s)	10, 110, 280, 398, 485, 554, 778
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	411
LguI	GCTCTTC	1 cut(s)	734
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	2 cut(s)	410, 520
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	4 cut(s)	30, 52, 176, 208
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	3 cut(s)	647, 721, 811
MhlI	GDGCHC	1 cut(s)	729
MluCI	AATT	5 cut(s)	341, 546, 565, 595, 679
MlyI	GAGTC	3 cut(s)	173, 755, 825
MnlI	CCTC	4 cut(s)	21, 461, 613, 616
Mph1103I	ATGCAT	1 cut(s)	487
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	3 cut(s)	363, 564, 614
MslI	CAYNNNNRTG	3 cut(s)	105, 204, 797
MspI	CCGG	2 cut(s)	25, 402
MspR9I	CCNGG	4 cut(s)	146, 403, 643, 751
MvaI	CCWGG	3 cut(s)	146, 643, 751
MwoI	GCNNNNNNNGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	7 cut(s)	10, 110, 280, 398, 485, 554, 778
NlaIV	GGNNCC	2 cut(s)	64, 496
NmuCI	GTSAC	3 cut(s)	52, 176, 208
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	2 cut(s)	398, 485
OliI	CACNNNNGTG	1 cut(s)	797
PaeI	GCATGC	1 cut(s)	485
PagI	TCATGA	1 cut(s)	774
PciSI	GCTCTTC	1 cut(s)	734
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	789, 802
PkrI	GCNGC	2 cut(s)	400, 535
PleI	GAGTC	3 cut(s)	172, 754, 824
PpsI	GAGTC	3 cut(s)	172, 754, 824
Ppu21I	YACGTR	1 cut(s)	560
PshBI	ATTAAT	1 cut(s)	363
Psp6I	CCWGG	3 cut(s)	144, 641, 749
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	3 cut(s)	144, 641, 749
PspN4I	GGNNCC	2 cut(s)	64, 496
PspPI	GGNCC	1 cut(s)	476
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	3 cut(s)	105, 204, 797
SapI	GCTCTTC	1 cut(s)	734
SaqAI	TTAA	3 cut(s)	363, 564, 614
SatI	GCNGC	2 cut(s)	399, 534
Sau3AI	GATC	1 cut(s)	411
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	3 cut(s)	173, 755, 825
ScrFI	CCNGG	4 cut(s)	146, 403, 643, 751
SduI	GDGCHC	1 cut(s)	729
SfaNI	GCATC	1 cut(s)	628
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	3 cut(s)	105, 204, 797
SphI	GCATGC	1 cut(s)	485
Sse9I	AATT	5 cut(s)	341, 546, 565, 595, 679
SsiI	CCGC	3 cut(s)	174, 322, 479
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	4 cut(s)	144, 401, 641, 749
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	250, 703
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	3 cut(s)	357, 618, 705
TasI	AATT	5 cut(s)	341, 546, 565, 595, 679
TfiI	GAWTC	2 cut(s)	789, 802
Tru1I	TTAA	3 cut(s)	363, 564, 614
Tru9I	TTAA	3 cut(s)	363, 564, 614
TscAI	CASTG	3 cut(s)	73, 454, 591
TseFI	GTSAC	3 cut(s)	52, 176, 208
TseI	GCWGC	2 cut(s)	398, 533
Tsp45I	GTSAC	3 cut(s)	52, 176, 208
TspDTI	ATGAA	4 cut(s)	27, 294, 404, 539
TspGWI	ACGGA	2 cut(s)	399, 433
TspRI	CASTG	3 cut(s)	73, 454, 591
VpaK11BI	GGWCC	1 cut(s)	476
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	2 cut(s)	341, 546
XceI	RCATGY	2 cut(s)	398, 485
XmiI	GTMKAC	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.