Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Forward (+)

61063596 .. 61065298

Gene Structure 1703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00328160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGTGGCAGTGTCAGAGAAAGACACAAAGCGCGGGCTGTCCACCACCATGAATAATGAAGAAGTTCCAAGCCGGAGTAGCTGGATCGCTATAACTCGTTCTATTGAATTCGATGCTGTAGAACTCAGCAGTTACATGTTCAATGTTTTTCTTCTCCTCAGGTTACTAGGGAAAGTTGCATTGGTGACCGGTGGAGCCACTGGGATTGGAGAGAGCATTGTCCGCCTATTCCACAAACATGGTGCAAAAGTTTGCTTAGTTGATGTGCAGGACAACTTGGGATTGCAAGTCTGCGAGTCTCTTGGCGGCGACGCAAATGTTTGTTATTTCCATTGTGACGTCACAAAAGAAGCTGATGTTAGCGGTGCAGTTGATTTCACAGTTGATAAGTATGGCACACTTGATATCATGGTCAACAATGCTGGGGTGTCAGGTTCACCCTGTCCTGATATCCGCAACGTAGACTTATCTGAATTTGAGAAGGTGTTCGATATTAATGTGAAGGGAGTTTTCCACGGAATGAAACACGCAGCTAGGACGATGATCCCACTGAAAAAGGGTAGTATCATTTCTCTTTGCAGTGTTACAAGCACTACAGGGGGCCTAGGACCGCATGCATACACAGGGTCCAAGCACGCTGTGTTGGGGCTGACCAAGAATGTTGCTGCTGAGCTTGGAATTCATGGCATACGTGTTAACTGTGTCTCTCCTTATGCAGTGGCGACTAATTTGGCTTTGGCTCACTTGGATGAGGAAGAGAGAACCGAAGATGCCTGGACAGGGTTCCGGGATTTCGTAGGGAGAAATGCCAATTTGCAGGGAGTGGAATTGACAGTTGATGATGTTGCAAATGCTGTGCTTTTCTTAGCAAGTGATGAGTCCAGGTATATAAGTGGGGATAATCTCATGATTGATGGTGGAGTCACGTGCGTGAATCACTCGCTTAGAGTCTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

319

Amino Acids

34.26

Weight (kDa)

5.46

Isoelectric Point (pI)

25.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	58 - 245	1.3e-51	short chain dehydrogenase
KR	PF08659	60 - 214	3.3e-07	KR domain
adh_short_C2	PF13561	66 - 309	2e-59	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
AccI	GTMKAC	1 cut(s)	462
AccII	CGCG	1 cut(s)	33
AciI	CCGC	6 cut(s)	33, 223, 306, 363, 454, 611
AclWI	GGATC	2 cut(s)	92, 538
AcsI	RAATTY	3 cut(s)	107, 473, 678
AcuI	CTGAAG	1 cut(s)	937
AcvI	CACGTG	1 cut(s)	927
AcyI	GRCGYC	1 cut(s)	339
AdeI	CACNNNGTG	1 cut(s)	640
AfiI	CCNNNNNNNGG	1 cut(s)	780
AflIII	ACRYGT	2 cut(s)	135, 691
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	107, 142
AjnI	CCWGG	2 cut(s)	773, 881
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AleI	CACNNNNGTG	1 cut(s)	929
AluBI	AGCT	4 cut(s)	81, 353, 533, 673
AluI	AGCT	4 cut(s)	81, 353, 533, 673
Alw26I	GTCTC	2 cut(s)	303, 709
AlwI	GGATC	2 cut(s)	92, 538
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	2 cut(s)	530, 665
ApoI	RAATTY	3 cut(s)	107, 473, 678
AseI	ATTAAT	1 cut(s)	495
AsiGI	ACCGGT	1 cut(s)	188
Asp700I	GAANNNNTTC	2 cut(s)	63, 485
AspA2I	CCTAGG	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	3 cut(s)	601, 608, 627
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	2 cut(s)	196, 429
AvaII	GGWCC	2 cut(s)	608, 627
AvrII	CCTAGG	1 cut(s)	604
AxyI	CCTNAGG	1 cut(s)	158
BbrPI	CACGTG	1 cut(s)	927
BbsI	GAAGAC	1 cut(s)	943
BbvI	GCAGC	2 cut(s)	542, 652
BccI	CCATC	1 cut(s)	908
BciT130I	CCWGG	2 cut(s)	775, 883
BcnI	CCSGG	1 cut(s)	788
BcoDI	GTCTC	2 cut(s)	303, 709
BfaI	CTAG	3 cut(s)	167, 534, 605
BfmI	CTRYAG	2 cut(s)	117, 594
BisI	GCNGC	3 cut(s)	307, 531, 666
BlnI	CCTAGG	1 cut(s)	604
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	3 cut(s)	308, 532, 667
Bme1390I	CCNGG	3 cut(s)	775, 788, 883
Bme18I	GGWCC	2 cut(s)	608, 627
BmgT120I	GGNCC	3 cut(s)	601, 608, 627
BmiI	GGNNCC	4 cut(s)	196, 602, 628, 785
BmrFI	CCNGG	3 cut(s)	775, 788, 883
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	103, 760
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	943
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuMI	CCSGG	1 cut(s)	788
BsaAI	YACGTR	2 cut(s)	692, 927
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	514, 604
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	780
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	158
BseBI	CCWGG	2 cut(s)	775, 883
BseDI	CCNNGG	2 cut(s)	514, 604
BseGI	GGATG	1 cut(s)	754
BseLI	CCNNNNNNNGG	1 cut(s)	780
BseMII	CTCAG	3 cut(s)	139, 172, 660
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	542, 652
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	2 cut(s)	287, 387
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	603
BshTI	ACCGGT	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	73, 189, 787
BslI	CCNNNNNNNGG	1 cut(s)	780
BsmAI	GTCTC	2 cut(s)	303, 709
BsnI	GGCC	1 cut(s)	603
Bsp143I	GATC	2 cut(s)	84, 543
Bsp1720I	GCTNAGC	1 cut(s)	669
BspACI	CCGC	6 cut(s)	33, 223, 306, 363, 454, 611
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	3 cut(s)	138, 171, 661
BspFNI	CGCG	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	4 cut(s)	196, 602, 628, 785
BspPI	GGATC	2 cut(s)	92, 538
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	514, 604
BssMI	GATC	2 cut(s)	84, 543
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	604
Bst2UI	CCWGG	2 cut(s)	775, 883
Bst4CI	ACNGT	3 cut(s)	382, 701, 835
Bst6I	CTCTTC	1 cut(s)	750
BstACI	GRCGYC	1 cut(s)	339
BstBAI	YACGTR	2 cut(s)	692, 927
BstC8I	GCNNGC	3 cut(s)	35, 615, 636
BstDEI	CTNAG	6 cut(s)	125, 158, 256, 669, 865, 944
BstDSI	CCRYGG	1 cut(s)	514
BstEII	GGTNACC	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	754
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	2 cut(s)	87, 546
BstMAI	GTCTC	2 cut(s)	303, 709
BstMBI	GATC	2 cut(s)	84, 543
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 222
BstNI	CCWGG	2 cut(s)	775, 883
BstNSI	RCATGY	2 cut(s)	139, 617
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	3 cut(s)	773, 786, 881
BstSFI	CTRYAG	2 cut(s)	117, 594
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	542, 652
BstV2I	GAAGAC	1 cut(s)	943
BstXI	CCANNNNNNTGG	1 cut(s)	239
Bsu36I	CCTNAGG	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	603
BtgI	CCRYGG	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	754
BtsI	GCAGTG	3 cut(s)	15, 586, 723
BtsIMutI	CAGTG	5 cut(s)	15, 198, 548, 586, 723
Cac8I	GCNNGC	3 cut(s)	35, 615, 636
CciI	TCATGA	1 cut(s)	906
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	3 cut(s)	601, 608, 627
CseI	GACGC	1 cut(s)	320
CspAI	ACCGGT	1 cut(s)	188
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	7 cut(s)	49, 136, 239, 409, 614, 683, 907
DdeI	CTNAG	6 cut(s)	125, 158, 256, 669, 865, 944
DpnI	GATC	2 cut(s)	86, 545
DpnII	GATC	2 cut(s)	84, 543
DraIII	CACNNNGTG	1 cut(s)	640
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
EciI	GGCGGA	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	604
Eco32I	GATATC	2 cut(s)	406, 451
Eco47I	GGWCC	2 cut(s)	608, 627
Eco57I	CTGAAG	1 cut(s)	937
Eco72I	CACGTG	1 cut(s)	927
Eco81I	CCTNAGG	1 cut(s)	158
Eco91I	GGTNACC	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	601
EcoO65I	GGTNACC	1 cut(s)	184
EcoRI	GAATTC	2 cut(s)	107, 678
EcoRII	CCWGG	2 cut(s)	773, 881
EcoRV	GATATC	2 cut(s)	406, 451
EcoT14I	CCWWGG	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	604
FaeI	CATG	7 cut(s)	52, 139, 242, 412, 617, 686, 910
FatI	CATG	7 cut(s)	48, 135, 238, 408, 613, 682, 906
FauI	CCCGC	1 cut(s)	26
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	3 cut(s)	307, 531, 666
FokI	GGATG	1 cut(s)	761
Fsp4HI	GCNGC	3 cut(s)	307, 531, 666
FspBI	CTAG	3 cut(s)	167, 534, 605
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	3 cut(s)	307, 531, 666
GsaI	CCCAGC	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	3 cut(s)	73, 189, 787
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	7 cut(s)	52, 139, 242, 412, 617, 686, 910
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HincII	GTYRAC	2 cut(s)	415, 697
HindII	GTYRAC	2 cut(s)	415, 697
HinfI	GANTC	5 cut(s)	296, 878, 921, 934, 948
HpaI	GTTAAC	1 cut(s)	697
HpaII	CCGG	3 cut(s)	73, 189, 787
HphI	GGTGA	2 cut(s)	196, 429
Hpy166II	GTNNAC	5 cut(s)	42, 415, 437, 463, 697
Hpy188I	TCNGA	3 cut(s)	16, 472, 956
Hpy188III	TCNNGA	2 cut(s)	446, 907
Hpy8I	GTNNAC	5 cut(s)	42, 415, 437, 463, 697
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	475, 496
HpyCH4III	ACNGT	3 cut(s)	382, 701, 835
HpyCH4IV	ACGT	4 cut(s)	339, 459, 691, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 222
HpyF3I	CTNAG	6 cut(s)	125, 158, 256, 669, 865, 944
HpySE526I	ACGT	4 cut(s)	339, 459, 691, 926
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	7 cut(s)	52, 139, 242, 412, 617, 686, 910
HspAI	GCGC	1 cut(s)	31
KspAI	GTTAAC	1 cut(s)	697
Kzo9I	GATC	2 cut(s)	84, 543
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	2 cut(s)	542, 652
LweI	GCATC	2 cut(s)	103, 760
MaeI	CTAG	3 cut(s)	167, 534, 605
MaeII	ACGT	4 cut(s)	339, 459, 691, 926
MaeIII	GTNAC	7 cut(s)	131, 162, 184, 335, 340, 583, 922
MalI	GATC	2 cut(s)	86, 545
MboI	GATC	2 cut(s)	84, 543
MboII	GAAGA	5 cut(s)	71, 143, 767, 779, 943
MluCI	AATT	6 cut(s)	107, 473, 678, 727, 811, 827
MlyI	GAGTC	4 cut(s)	305, 887, 930, 957
MnlI	CCTC	2 cut(s)	167, 745
Mph1103I	ATGCAT	1 cut(s)	619
MroXI	GAANNNNTTC	2 cut(s)	63, 485
MseI	TTAA	2 cut(s)	495, 696
MslI	CAYNNNNRTG	4 cut(s)	47, 237, 747, 929
MspI	CCGG	3 cut(s)	73, 189, 787
MspR9I	CCNGG	3 cut(s)	775, 788, 883
MvaI	CCWGG	2 cut(s)	775, 883
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	78, 222
NciI	CCSGG	1 cut(s)	788
NdeII	GATC	2 cut(s)	84, 543
NlaIII	CATG	7 cut(s)	52, 139, 242, 412, 617, 686, 910
NlaIV	GGNNCC	4 cut(s)	196, 602, 628, 785
NmuCI	GTSAC	4 cut(s)	184, 335, 340, 922
NsiI	ATGCAT	1 cut(s)	619
NspI	RCATGY	2 cut(s)	139, 617
OliI	CACNNNNGTG	1 cut(s)	929
PaeI	GCATGC	1 cut(s)	617
PagI	TCATGA	1 cut(s)	906
PciI	ACATGT	1 cut(s)	135
PdmI	GAANNNNTTC	2 cut(s)	63, 485
PfeI	GAWTC	1 cut(s)	934
PfoI	TCCNGGA	1 cut(s)	786
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	308, 532, 667
PleI	GAGTC	4 cut(s)	304, 886, 929, 956
PmaCI	CACGTG	1 cut(s)	927
PmlI	CACGTG	1 cut(s)	927
PpsI	GAGTC	4 cut(s)	304, 886, 929, 956
Ppu21I	YACGTR	2 cut(s)	692, 927
PscI	ACATGT	1 cut(s)	135
PshBI	ATTAAT	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	773, 881
PspCI	CACGTG	1 cut(s)	927
PspEI	GGTNACC	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	773, 881
PspN4I	GGNNCC	4 cut(s)	196, 602, 628, 785
PspPI	GGNCC	3 cut(s)	601, 608, 627
RseI	CAYNNNNRTG	4 cut(s)	47, 237, 747, 929
SaqAI	TTAA	2 cut(s)	495, 696
SatI	GCNGC	3 cut(s)	307, 531, 666
Sau3AI	GATC	2 cut(s)	84, 543
Sau96I	GGNCC	3 cut(s)	601, 608, 627
SchI	GAGTC	4 cut(s)	305, 887, 930, 957
ScrFI	CCNGG	3 cut(s)	775, 788, 883
SfaNI	GCATC	2 cut(s)	103, 760
SfcI	CTRYAG	2 cut(s)	117, 594
SinI	GGWCC	2 cut(s)	608, 627
SmiMI	CAYNNNNRTG	4 cut(s)	47, 237, 747, 929
SphI	GCATGC	1 cut(s)	617
Sse9I	AATT	6 cut(s)	107, 473, 678, 727, 811, 827
SsiI	CCGC	6 cut(s)	33, 223, 306, 363, 454, 611
SspMI	CTAG	3 cut(s)	167, 534, 605
StyD4I	CCNGG	3 cut(s)	773, 786, 881
StyI	CCWWGG	1 cut(s)	604
TaaI	ACNGT	3 cut(s)	382, 701, 835
TaiI	ACGT	4 cut(s)	342, 462, 694, 929
TaqI	TCGA	2 cut(s)	111, 489
TasI	AATT	6 cut(s)	107, 473, 678, 727, 811, 827
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	934
Tru1I	TTAA	2 cut(s)	495, 696
Tru9I	TTAA	2 cut(s)	495, 696
TscAI	CASTG	5 cut(s)	15, 205, 555, 586, 723
TseFI	GTSAC	4 cut(s)	184, 335, 340, 922
TseI	GCWGC	2 cut(s)	530, 665
Tsp45I	GTSAC	4 cut(s)	184, 335, 340, 922
TspDTI	ATGAA	4 cut(s)	65, 72, 536, 671
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	5 cut(s)	15, 205, 555, 586, 723
VpaK11BI	GGWCC	2 cut(s)	608, 627
VspI	ATTAAT	1 cut(s)	495
XapI	RAATTY	3 cut(s)	107, 473, 678
XceI	RCATGY	2 cut(s)	139, 617
XmaJI	CCTAGG	1 cut(s)	604
XmiI	GTMKAC	1 cut(s)	462
XmnI	GAANNNNTTC	2 cut(s)	63, 485
XspI	CTAG	3 cut(s)	167, 534, 605
ZraI	GACGTC	1 cut(s)	340
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.