Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Forward (+)

22865403 .. 22867198

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCCACCACCATGACTGCACAAGTGGGTTCGCTTCCAAGCTTCCAGAGGTTAGTAGGGAAAGTGGCATTGGTGACCGGCGGAGCCACTGGTATTGGAGAAAGCATTGTGCGCCTGTTCCGCAAGCACGGTGCAAAAGTTTGTTTAGTCGATGTGCAGGACAACCTGGGCTTGCAAGTGTGTGAATCCCTCCACGGTGATCCAAACATTTGTTATCTCCATTGTGATGTCACAGTGGAGGATGATGTTAGCCGTGCAGTTGATTTCACGGTCAATAAATATGGCTCACTGGATATCTTGGTCAACAATGCTGGGGTGTCAGGTTCACCTTGTCCCGACATCCGTGATGCAGACTTGTCTGAGTTTCAGAAGGTGTTTGATATTAATGTAAAGGGAGTCTTCCTCGGAATGAAGCATGCAGCCAGGGCAATGATCCCCCGGAAAAAGGGCAGTATAGTTTCGCTTTCCAGTGTTGCAAGTGTTGTAGCAGGCCTAGGACCACATGCGTACACAGGGTCCAAGCATGCTGTATTGGGGCTTACGAAAAACGTTGCAGCTGAGCTTGGGAATCATGGGATACGCGTTAACTGCGTTTCTCCTTATGCAGTTGCGACGAATTTGGCATTGGCTCACTTGCCCGAGGAAGAAAGAACTGAAGATGCCTGGACAGGTTTCCGTACTTTTGTAGGGAATAACGCCAACTTGCAAGGAGTGGAGTTGACGGTTGATGATGTAGCTAATGCTGTGCTGTTCTTGGCAAGTGATGAGTCCAAGTATATAAGTGGTGATAATCTCATGGTTGATGGGGGCTTCACTGCTGTGAATCACTCATTCAGAGTCTTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

283

Amino Acids

29.95

Weight (kDa)

5.97

Isoelectric Point (pI)

21.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	582
AciI	CCGC	2 cut(s)	81, 121
AclI	AACGTT	1 cut(s)	549
AclWI	GGATC	2 cut(s)	194, 427
AcsI	RAATTY	1 cut(s)	616
AcuI	CTGAAG	1 cut(s)	675
AfaI	GTAC	2 cut(s)	509, 679
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflIII	ACRYGT	1 cut(s)	580
AjnI	CCWGG	3 cut(s)	165, 422, 662
AjuI	GAANNNNNNNTTGG	4 cut(s)	53, 85, 608, 640
AleI	CACNNNNGTG	1 cut(s)	818
AluBI	AGCT	4 cut(s)	42, 557, 562, 737
AluI	AGCT	4 cut(s)	42, 557, 562, 737
AlwI	GGATC	2 cut(s)	194, 427
Ama87I	CYCGRG	1 cut(s)	638
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	419, 554
ApoI	RAATTY	1 cut(s)	616
AseI	ATTAAT	1 cut(s)	384
AspA2I	CCTAGG	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	497, 516
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	4 cut(s)	85, 209, 318, 797
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	2 cut(s)	497, 516
AvrII	CCTAGG	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	391
BbvI	GCAGC	2 cut(s)	431, 566
BccI	CCATC	1 cut(s)	797
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	3 cut(s)	167, 424, 664
BciVI	GTATCC	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	439
BfaI	CTAG	1 cut(s)	494
BfuI	GTATCC	1 cut(s)	570
BisI	GCNGC	2 cut(s)	420, 555
BlnI	CCTAGG	1 cut(s)	493
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	2 cut(s)	421, 556
Bme1390I	CCNGG	4 cut(s)	167, 424, 439, 664
Bme18I	GGWCC	2 cut(s)	497, 516
BmeT110I	CYCGRG	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	497, 516
BmiI	GGNNCC	2 cut(s)	85, 517
BmrFI	CCNGG	4 cut(s)	167, 424, 439, 664
BmsI	GCATC	2 cut(s)	337, 649
BpiI	GAAGAC	1 cut(s)	391
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuMI	CCSGG	1 cut(s)	439
BsaJI	CCNNGG	7 cut(s)	166, 193, 403, 423, 437, 493, 639
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	3 cut(s)	94, 294, 468
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	3 cut(s)	167, 424, 664
BseDI	CCNNGG	7 cut(s)	166, 193, 403, 423, 437, 493, 639
BseGI	GGATG	2 cut(s)	247, 339
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	351, 549
BseNI	ACTGG	3 cut(s)	94, 294, 468
BseXI	GCAGC	2 cut(s)	431, 566
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	2 cut(s)	176, 276
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	2 cut(s)	78, 439
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	492
BsoBI	CYCGRG	1 cut(s)	638
Bsp143I	GATC	2 cut(s)	199, 432
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	2 cut(s)	81, 121
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	2 cut(s)	352, 550
BspFNI	CGCG	1 cut(s)	582
BspLI	GGNNCC	2 cut(s)	85, 517
BspPI	GGATC	2 cut(s)	194, 427
BsrDI	GCAATG	1 cut(s)	435
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	94, 294, 468
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	7 cut(s)	166, 193, 403, 423, 437, 493, 639
BssMI	GATC	2 cut(s)	199, 432
BssT1I	CCWWGG	1 cut(s)	493
Bst2UI	CCWGG	3 cut(s)	167, 424, 664
Bst4CI	ACNGT	5 cut(s)	131, 197, 235, 271, 724
BstC8I	GCNNGC	5 cut(s)	125, 173, 417, 490, 525
BstDEI	CTNAG	2 cut(s)	360, 558
BstDSI	CCRYGG	1 cut(s)	193
BstEII	GGTNACC	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	247, 339
BstFNI	CGCG	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	2 cut(s)	202, 435
BstMBI	GATC	2 cut(s)	199, 432
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 120, 425, 588
BstNI	CCWGG	3 cut(s)	167, 424, 664
BstNSI	RCATGY	3 cut(s)	419, 506, 527
BstPI	GGTNACC	1 cut(s)	73
BstSCI	CCNGG	4 cut(s)	165, 422, 437, 662
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	2 cut(s)	431, 566
BstV2I	GAAGAC	1 cut(s)	391
BsuI	GTATCC	1 cut(s)	570
BsuRI	GGCC	1 cut(s)	492
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	247, 339
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	5 cut(s)	87, 240, 287, 475, 813
Cac8I	GCNNGC	5 cut(s)	125, 173, 417, 490, 525
CfoI	GCGC	1 cut(s)	114
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	497, 516
Csp6I	GTAC	2 cut(s)	508, 678
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	6 cut(s)	13, 416, 503, 524, 572, 796
CviQI	GTAC	2 cut(s)	508, 678
DdeI	CTNAG	2 cut(s)	360, 558
DpnI	GATC	2 cut(s)	201, 434
DpnII	GATC	2 cut(s)	199, 432
EciI	GGCGGA	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	493
Eco147I	AGGCCT	1 cut(s)	492
Eco32I	GATATC	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	497, 516
Eco57I	CTGAAG	1 cut(s)	675
Eco88I	CYCGRG	1 cut(s)	638
Eco91I	GGTNACC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	73
EcoRII	CCWGG	3 cut(s)	165, 422, 662
EcoRV	GATATC	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	6 cut(s)	16, 419, 506, 527, 575, 799
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	6 cut(s)	12, 415, 502, 523, 571, 795
Fnu4HI	GCNGC	2 cut(s)	420, 555
FokI	GGATG	2 cut(s)	254, 326
Fsp4HI	GCNGC	2 cut(s)	420, 555
FspBI	CTAG	1 cut(s)	494
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	2 cut(s)	420, 555
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	492
HapII	CCGG	2 cut(s)	78, 439
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	6 cut(s)	16, 419, 506, 527, 575, 799
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	3 cut(s)	304, 586, 720
HindII	GTYRAC	3 cut(s)	304, 586, 720
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	6 cut(s)	185, 396, 568, 767, 823, 837
HpaI	GTTAAC	1 cut(s)	586
HpaII	CCGG	2 cut(s)	78, 439
HphI	GGTGA	4 cut(s)	85, 209, 318, 797
Hpy166II	GTNNAC	6 cut(s)	6, 304, 326, 510, 586, 720
Hpy188I	TCNGA	4 cut(s)	361, 369, 407, 836
Hpy188III	TCNNGA	2 cut(s)	46, 335
Hpy8I	GTNNAC	6 cut(s)	6, 304, 326, 510, 586, 720
Hpy99I	CGWCG	1 cut(s)	616
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	5 cut(s)	131, 197, 235, 271, 724
HpyCH4IV	ACGT	1 cut(s)	549
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 120, 425, 588
HpyF3I	CTNAG	2 cut(s)	360, 558
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	6 cut(s)	16, 419, 506, 527, 575, 799
HspAI	GCGC	1 cut(s)	112
KspAI	GTTAAC	1 cut(s)	586
Kzo9I	GATC	2 cut(s)	199, 432
LmnI	GCTCC	1 cut(s)	83
Lsp1109I	GCAGC	2 cut(s)	431, 566
LweI	GCATC	2 cut(s)	337, 649
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	2 cut(s)	73, 229
MalI	GATC	2 cut(s)	201, 434
MboI	GATC	2 cut(s)	199, 432
MboII	GAAGA	3 cut(s)	391, 656, 668
MluCI	AATT	1 cut(s)	616
MluI	ACGCGT	1 cut(s)	580
MlyI	GAGTC	3 cut(s)	405, 776, 846
MnlI	CCTC	5 cut(s)	42, 200, 232, 413, 634
MseI	TTAA	2 cut(s)	384, 585
MslI	CAYNNNNRTG	3 cut(s)	11, 225, 818
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	2 cut(s)	78, 439
MspR9I	CCNGG	4 cut(s)	167, 424, 439, 664
MvaI	CCWGG	3 cut(s)	167, 424, 664
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	4 cut(s)	111, 120, 425, 588
NciI	CCSGG	1 cut(s)	439
NdeII	GATC	2 cut(s)	199, 432
NlaIII	CATG	6 cut(s)	16, 419, 506, 527, 575, 799
NlaIV	GGNNCC	2 cut(s)	85, 517
NmuCI	GTSAC	2 cut(s)	73, 229
NspI	RCATGY	3 cut(s)	419, 506, 527
OliI	CACNNNNGTG	1 cut(s)	818
PaeI	GCATGC	2 cut(s)	419, 527
PceI	AGGCCT	1 cut(s)	492
PfeI	GAWTC	3 cut(s)	185, 568, 823
PkrI	GCNGC	2 cut(s)	421, 556
PleI	GAGTC	3 cut(s)	404, 775, 845
PpsI	GAGTC	3 cut(s)	404, 775, 845
PshBI	ATTAAT	1 cut(s)	384
Psp1406I	AACGTT	1 cut(s)	549
Psp6I	CCWGG	3 cut(s)	165, 422, 662
PspEI	GGTNACC	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	3 cut(s)	165, 422, 662
PspN4I	GGNNCC	2 cut(s)	85, 517
PspPI	GGNCC	2 cut(s)	497, 516
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	2 cut(s)	509, 679
RsaNI	GTAC	2 cut(s)	508, 678
RseI	CAYNNNNRTG	3 cut(s)	11, 225, 818
SaqAI	TTAA	2 cut(s)	384, 585
SatI	GCNGC	2 cut(s)	420, 555
Sau3AI	GATC	2 cut(s)	199, 432
Sau96I	GGNCC	2 cut(s)	497, 516
SchI	GAGTC	3 cut(s)	405, 776, 846
ScrFI	CCNGG	4 cut(s)	167, 424, 439, 664
SfaNI	GCATC	2 cut(s)	337, 649
SinI	GGWCC	2 cut(s)	497, 516
SmiMI	CAYNNNNRTG	3 cut(s)	11, 225, 818
SphI	GCATGC	2 cut(s)	419, 527
Sse9I	AATT	1 cut(s)	616
SseBI	AGGCCT	1 cut(s)	492
SsiI	CCGC	2 cut(s)	81, 121
SspMI	CTAG	1 cut(s)	494
StuI	AGGCCT	1 cut(s)	492
StyD4I	CCNGG	4 cut(s)	165, 422, 437, 662
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	5 cut(s)	131, 197, 235, 271, 724
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	1 cut(s)	150
TasI	AATT	1 cut(s)	616
TfiI	GAWTC	3 cut(s)	185, 568, 823
Tru1I	TTAA	2 cut(s)	384, 585
Tru9I	TTAA	2 cut(s)	384, 585
TscAI	CASTG	5 cut(s)	94, 240, 294, 475, 820
TseFI	GTSAC	2 cut(s)	73, 229
TseI	GCWGC	2 cut(s)	419, 554
Tsp45I	GTSAC	2 cut(s)	73, 229
TspDTI	ATGAA	1 cut(s)	425
TspGWI	ACGGA	2 cut(s)	332, 665
TspRI	CASTG	5 cut(s)	94, 240, 294, 475, 820
VpaK11BI	GGWCC	2 cut(s)	497, 516
VspI	ATTAAT	1 cut(s)	384
XapI	RAATTY	1 cut(s)	616
XceI	RCATGY	3 cut(s)	419, 506, 527
XmaJI	CCTAGG	1 cut(s)	493
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.