Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002539.1

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Reverse (-)

474958 .. 476924

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002539.1_g000115.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atggtggcagtggcagagaacgacacaaagcgcgggctgtccaccaccatgaatgaagaagttccaagccggaggttactagggaaagttgcattggtgaccggtggagccactgggattggagagagcattgtccgcctatttcacaaacatggtgcaaaagtttgcttagttgatgtgcaggacaacttgggattgcaagtctgcgagtcacttggcagcgacgcaaatgtttgttatttccattgtgatgtcacaaaagaagctgatgttagcggtgcagttgatttcacagtcggtaagtatggcacacttgatatcatggtcaacaatgctggggtgtcaggttcaccctgtcctgatatccgcaatgcagacttatctgaatttgagaaggtgttcgatattaatgtgaagggagttttccacggaatgaaacacgcagctaggatgatgatcccgctgaaaaatggtagtatcatttctctttgcagtgtttcaagcactacaggaggcctaggaccgcatgcatacacagggtccaagcacgctgtgttggggctgaccaagaatgttgctgctgagcttggaattcatggcatacgtgttaactgtgtctctccttatgcagtggcgactaatttggctttggctcacttggctgaggaagagagaaccgaagatgcctggacagggttccgggatttcgtagggagaaatgccaatttgcagggagtggaattgacagttgatgatgttgcaaatgctgtgcttttcttagcaagtgatgagtccaggtatataagtggggataatctcatgattgatggtggagtcacgtgcgtgaatcactcgcttagagtcttcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

290

Amino Acids

30.78

Weight (kDa)

5.66

Isoelectric Point (pI)

20.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	33
AciI	CCGC	6 cut(s)	33, 136, 276, 367, 461, 524
AclWI	GGATC	1 cut(s)	451
AcsI	RAATTY	2 cut(s)	386, 591
AcuI	CTGAAG	1 cut(s)	850
AcvI	CACGTG	1 cut(s)	840
AdeI	CACNNNGTG	1 cut(s)	553
AfiI	CCNNNNNNNGG	1 cut(s)	693
AflIII	ACRYGT	1 cut(s)	604
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	501
AjnI	CCWGG	2 cut(s)	686, 794
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AleI	CACNNNNGTG	1 cut(s)	842
AluBI	AGCT	3 cut(s)	266, 446, 586
AluI	AGCT	3 cut(s)	266, 446, 586
Alw26I	GTCTC	1 cut(s)	622
AlwI	GGATC	1 cut(s)	451
AoxI	GGCC	1 cut(s)	514
ApeKI	GCWGC	3 cut(s)	219, 443, 578
ApoI	RAATTY	2 cut(s)	386, 591
AseI	ATTAAT	1 cut(s)	408
AsiGI	ACCGGT	1 cut(s)	101
Asp700I	GAANNNNTTC	2 cut(s)	60, 398
AspA2I	CCTAGG	1 cut(s)	517
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	521, 540
AsuC2I	CCSGG	1 cut(s)	701
AsuHPI	GGTGA	2 cut(s)	109, 342
AvaII	GGWCC	2 cut(s)	521, 540
AvrII	CCTAGG	1 cut(s)	517
BbrPI	CACGTG	1 cut(s)	840
BbsI	GAAGAC	1 cut(s)	856
BbvCI	CCTCAGC	1 cut(s)	663
BbvI	GCAGC	3 cut(s)	231, 455, 565
BccI	CCATC	1 cut(s)	821
BciT130I	CCWGG	2 cut(s)	688, 796
BcnI	CCSGG	1 cut(s)	701
BcoDI	GTCTC	1 cut(s)	622
BfaI	CTAG	3 cut(s)	80, 447, 518
BfmI	CTRYAG	1 cut(s)	507
BisI	GCNGC	3 cut(s)	220, 444, 579
BlnI	CCTAGG	1 cut(s)	517
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	3 cut(s)	221, 445, 580
Bme1390I	CCNGG	3 cut(s)	688, 701, 796
Bme18I	GGWCC	2 cut(s)	521, 540
BmgT120I	GGNCC	2 cut(s)	521, 540
BmiI	GGNNCC	3 cut(s)	109, 541, 698
BmrFI	CCNGG	3 cut(s)	688, 701, 796
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	673
BmuI	ACTGGG	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	856
Bpu10I	CCTNAGC	1 cut(s)	663
Bpu1102I	GCTNAGC	1 cut(s)	582
BpuMI	CCSGG	1 cut(s)	701
BsaAI	YACGTR	2 cut(s)	605, 840
BsaBI	GATNNNNATC	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	427, 517
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	693
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	376
Bse8I	GATNNNNATC	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	688, 796
BseDI	CCNNGG	2 cut(s)	427, 517
BseGI	GGATG	1 cut(s)	456
BseJI	GATNNNNATC	1 cut(s)	455
BseLI	CCNNNNNNNGG	1 cut(s)	693
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	2 cut(s)	573, 654
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	231, 455, 565
BseYI	CCCAGC	1 cut(s)	335
BsgI	GTGCAG	2 cut(s)	200, 300
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	516
BshTI	ACCGGT	1 cut(s)	101
BsiSI	CCGG	3 cut(s)	70, 102, 700
BslI	CCNNNNNNNGG	1 cut(s)	693
BsmAI	GTCTC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	516
Bsp143I	GATC	1 cut(s)	456
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	6 cut(s)	33, 136, 276, 367, 461, 524
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	2 cut(s)	574, 655
BspFNI	CGCG	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	3 cut(s)	109, 541, 698
BspPI	GGATC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	118
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	427, 517
BssMI	GATC	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	517
Bst2UI	CCWGG	2 cut(s)	688, 796
Bst4CI	ACNGT	3 cut(s)	295, 614, 748
Bst6I	CTCTTC	1 cut(s)	663
BstBAI	YACGTR	2 cut(s)	605, 840
BstC8I	GCNNGC	3 cut(s)	35, 528, 549
BstDEI	CTNAG	5 cut(s)	169, 582, 663, 778, 857
BstDSI	CCRYGG	1 cut(s)	427
BstEII	GGTNACC	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	456
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	1 cut(s)	459
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	1 cut(s)	456
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 659
BstNI	CCWGG	2 cut(s)	688, 796
BstNSI	RCATGY	1 cut(s)	530
BstPI	GGTNACC	1 cut(s)	97
BstSCI	CCNGG	3 cut(s)	686, 699, 794
BstSFI	CTRYAG	1 cut(s)	507
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	3 cut(s)	231, 455, 565
BstV2I	GAAGAC	1 cut(s)	856
BsuRI	GGCC	1 cut(s)	516
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	1 cut(s)	456
BtsI	GCAGTG	3 cut(s)	15, 499, 636
BtsIMutI	CAGTG	4 cut(s)	15, 111, 499, 636
Cac8I	GCNNGC	3 cut(s)	35, 528, 549
CciI	TCATGA	1 cut(s)	819
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	521, 540
CseI	GACGC	1 cut(s)	233
CspAI	ACCGGT	1 cut(s)	101
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	6 cut(s)	49, 152, 322, 527, 596, 820
DdeI	CTNAG	5 cut(s)	169, 582, 663, 778, 857
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
DraIII	CACNNNGTG	1 cut(s)	553
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
EciI	GGCGGA	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	517
Eco147I	AGGCCT	1 cut(s)	516
Eco32I	GATATC	2 cut(s)	319, 364
Eco47I	GGWCC	2 cut(s)	521, 540
Eco57I	CTGAAG	1 cut(s)	850
Eco72I	CACGTG	1 cut(s)	840
Eco91I	GGTNACC	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	591
EcoRII	CCWGG	2 cut(s)	686, 794
EcoRV	GATATC	2 cut(s)	319, 364
EcoT14I	CCWWGG	1 cut(s)	517
EcoT22I	ATGCAT	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	6 cut(s)	52, 155, 325, 530, 599, 823
FatI	CATG	6 cut(s)	48, 151, 321, 526, 595, 819
FauI	CCCGC	2 cut(s)	26, 468
Fnu4HI	GCNGC	3 cut(s)	220, 444, 579
FokI	GGATG	1 cut(s)	463
Fsp4HI	GCNGC	3 cut(s)	220, 444, 579
FspBI	CTAG	3 cut(s)	80, 447, 518
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	3 cut(s)	220, 444, 579
GsaI	CCCAGC	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	516
HapII	CCGG	3 cut(s)	70, 102, 700
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	6 cut(s)	52, 155, 325, 530, 599, 823
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HincII	GTYRAC	2 cut(s)	328, 610
HindII	GTYRAC	2 cut(s)	328, 610
HinfI	GANTC	5 cut(s)	209, 791, 834, 847, 861
HpaI	GTTAAC	1 cut(s)	610
HpaII	CCGG	3 cut(s)	70, 102, 700
HphI	GGTGA	2 cut(s)	109, 342
Hpy166II	GTNNAC	4 cut(s)	42, 328, 350, 610
Hpy188I	TCNGA	2 cut(s)	385, 869
Hpy188III	TCNNGA	2 cut(s)	359, 820
Hpy8I	GTNNAC	4 cut(s)	42, 328, 350, 610
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	388, 409
HpyCH4III	ACNGT	3 cut(s)	295, 614, 748
HpyCH4IV	ACGT	2 cut(s)	604, 839
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 659
HpyF3I	CTNAG	5 cut(s)	169, 582, 663, 778, 857
HpySE526I	ACGT	2 cut(s)	604, 839
Hsp92II	CATG	6 cut(s)	52, 155, 325, 530, 599, 823
HspAI	GCGC	1 cut(s)	31
KspAI	GTTAAC	1 cut(s)	610
Kzo9I	GATC	1 cut(s)	456
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	3 cut(s)	231, 455, 565
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	3 cut(s)	80, 447, 518
MaeII	ACGT	2 cut(s)	604, 839
MaeIII	GTNAC	5 cut(s)	75, 97, 210, 253, 835
MalI	GATC	1 cut(s)	458
MboI	GATC	1 cut(s)	456
MboII	GAAGA	4 cut(s)	68, 680, 692, 856
MluCI	AATT	5 cut(s)	386, 591, 640, 724, 740
MlyI	GAGTC	4 cut(s)	218, 800, 843, 870
MnlI	CCTC	3 cut(s)	66, 506, 658
Mph1103I	ATGCAT	1 cut(s)	532
MroXI	GAANNNNTTC	2 cut(s)	60, 398
MseI	TTAA	2 cut(s)	408, 609
MslI	CAYNNNNRTG	4 cut(s)	47, 150, 249, 842
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	3 cut(s)	70, 102, 700
MspR9I	CCNGG	3 cut(s)	688, 701, 796
MvaI	CCWGG	2 cut(s)	688, 796
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	135, 659
NciI	CCSGG	1 cut(s)	701
NdeII	GATC	1 cut(s)	456
NlaIII	CATG	6 cut(s)	52, 155, 325, 530, 599, 823
NlaIV	GGNNCC	3 cut(s)	109, 541, 698
NmuCI	GTSAC	4 cut(s)	97, 210, 253, 835
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	1 cut(s)	530
OliI	CACNNNNGTG	1 cut(s)	842
PaeI	GCATGC	1 cut(s)	530
PagI	TCATGA	1 cut(s)	819
PceI	AGGCCT	1 cut(s)	516
PdmI	GAANNNNTTC	2 cut(s)	60, 398
PfeI	GAWTC	1 cut(s)	847
PfoI	TCCNGGA	1 cut(s)	699
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	221, 445, 580
PleI	GAGTC	4 cut(s)	217, 799, 842, 869
PmaCI	CACGTG	1 cut(s)	840
PmlI	CACGTG	1 cut(s)	840
PpsI	GAGTC	4 cut(s)	217, 799, 842, 869
Ppu21I	YACGTR	2 cut(s)	605, 840
PshBI	ATTAAT	1 cut(s)	408
Psp6I	CCWGG	2 cut(s)	686, 794
PspCI	CACGTG	1 cut(s)	840
PspEI	GGTNACC	1 cut(s)	97
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	2 cut(s)	686, 794
PspN4I	GGNNCC	3 cut(s)	109, 541, 698
PspPI	GGNCC	2 cut(s)	521, 540
RseI	CAYNNNNRTG	4 cut(s)	47, 150, 249, 842
SaqAI	TTAA	2 cut(s)	408, 609
SatI	GCNGC	3 cut(s)	220, 444, 579
Sau3AI	GATC	1 cut(s)	456
Sau96I	GGNCC	2 cut(s)	521, 540
SchI	GAGTC	4 cut(s)	218, 800, 843, 870
ScrFI	CCNGG	3 cut(s)	688, 701, 796
SetI	ASST	9 cut(s)	77, 268, 349, 399, 448, 588, 607, 800, 842
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	1 cut(s)	507
SinI	GGWCC	2 cut(s)	521, 540
SmiMI	CAYNNNNRTG	4 cut(s)	47, 150, 249, 842
SphI	GCATGC	1 cut(s)	530
Sse9I	AATT	5 cut(s)	386, 591, 640, 724, 740
SseBI	AGGCCT	1 cut(s)	516
SsiI	CCGC	6 cut(s)	33, 136, 276, 367, 461, 524
SspMI	CTAG	3 cut(s)	80, 447, 518
StuI	AGGCCT	1 cut(s)	516
StyD4I	CCNGG	3 cut(s)	686, 699, 794
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	3 cut(s)	295, 614, 748
TaiI	ACGT	2 cut(s)	607, 842
TaqI	TCGA	1 cut(s)	402
TasI	AATT	5 cut(s)	386, 591, 640, 724, 740
TfiI	GAWTC	1 cut(s)	847
Tru1I	TTAA	2 cut(s)	408, 609
Tru9I	TTAA	2 cut(s)	408, 609
TscAI	CASTG	4 cut(s)	15, 118, 499, 636
TseFI	GTSAC	4 cut(s)	97, 210, 253, 835
TseI	GCWGC	3 cut(s)	219, 443, 578
Tsp45I	GTSAC	4 cut(s)	97, 210, 253, 835
TspDTI	ATGAA	4 cut(s)	65, 69, 449, 584
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	4 cut(s)	15, 118, 499, 636
VpaK11BI	GGWCC	2 cut(s)	521, 540
VspI	ATTAAT	1 cut(s)	408
XapI	RAATTY	2 cut(s)	386, 591
XceI	RCATGY	1 cut(s)	530
XmaJI	CCTAGG	1 cut(s)	517
XmnI	GAANNNNTTC	2 cut(s)	60, 398
XspI	CTAG	3 cut(s)	80, 447, 518
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.