Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Reverse (-)

2731017 .. 2732943

Gene Structure 1927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1033100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGACTGAACAAGTGGGTTCGCTTCCGAGCTTCCAGAGGTTAGTAGGGAAAGTGGCATTGGTGACCGGCGGAGCCACTGGCATTGGAGAAAGCATTGTGCGCCTGTTCCACAAACATGGCGCAAAAGTTTGTTTAGTTGATGTGCAGGACAACCTCGGCTTACAAGTGTGCGAATCCCTCAACGGAGATCCAAACATTTGTTATCTCCATTGTGATGTCACGGTAGAGGATGATGTTAGCCGCGCAGTTGATTTCACTGTCGATAAGTATGGCACGCTGGATATCATAGTCAACAACGCTGGGGTGTCAGGTTCGCCTTGTCCAGACATCCGCAATGCAGGCCTATCTGAGTTTCAGAAAGTGTTTGATATTAACGTGAAGGGAGTGTTCCTCGGAATGAAGCACGCAGCTAGGGCAATGATCCCGCAGAAAAAGGGCAGCATAGTTTCTCTTTCCAGTGTTTCAAGTGTTCTAGGAGGCATTGGACCACATGCATACACAGGGTCCAAGCATGCTGTAGTGGGGCTGACCAAGAACGTTGCAGCTGAGCTTGGGAATCACGGGATACGCGTTAACTGCGTTTCTCCTTATGCAGTTGCGACGAATTTGGCTTTGGCTCACCTGCACGAGGATGCGAGAACCGAAGATGCCTGGACAGGTTTCCGATCTTTTATATCGAAAAATGCCAACTTGCAAGGAGTGGAACTGACAGTTGATGGTGTAGCTACTGCTGTCCTCTTTTTGGCAAGTGACGAGTCCAAGTATATAAGCGGGGATAATCTCATGATCGACGGGGGCTTCACTTGTGTGAATCACTCACTGAGAGTCTTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

279

Amino Acids

29.43

Weight (kDa)

6.19

Isoelectric Point (pI)

21.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	17 - 204	3.5e-52	short chain dehydrogenase
KR	PF08659	19 - 177	6.4e-10	KR domain
adh_short_C2	PF13561	25 - 268	3.4e-59	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	630
Acc36I	ACCTGC	1 cut(s)	630
AccII	CGCG	2 cut(s)	243, 570
AciI	CCGC	5 cut(s)	69, 241, 331, 425, 771
AclI	AACGTT	1 cut(s)	537
AclWI	GGATC	2 cut(s)	182, 415
AcsI	RAATTY	1 cut(s)	604
AfiI	CCNNNNNNNGG	2 cut(s)	628, 742
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	1 cut(s)	465
AjnI	CCWGG	1 cut(s)	650
AjuI	GAANNNNNNNTTGG	4 cut(s)	41, 73, 596, 628
AleI	CACNNNNGTG	1 cut(s)	806
AluBI	AGCT	5 cut(s)	30, 410, 545, 550, 725
AluI	AGCT	5 cut(s)	30, 410, 545, 550, 725
AlwI	GGATC	2 cut(s)	182, 415
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	3 cut(s)	407, 438, 542
ApoI	RAATTY	1 cut(s)	604
AspLEI	GCGC	3 cut(s)	102, 122, 245
AspS9I	GGNCC	2 cut(s)	485, 504
AsuHPI	GGTGA	2 cut(s)	73, 611
AvaII	GGWCC	2 cut(s)	485, 504
BauI	CACGAG	1 cut(s)	626
BbvI	GCAGC	3 cut(s)	419, 450, 554
BccI	CCATC	1 cut(s)	710
BciT130I	CCWGG	1 cut(s)	652
BciVI	GTATCC	1 cut(s)	558
BfaI	CTAG	2 cut(s)	411, 473
BfmI	CTRYAG	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	630
BfuI	GTATCC	1 cut(s)	558
BisI	GCNGC	4 cut(s)	241, 408, 439, 543
BlpI	GCTNAGC	1 cut(s)	546
BlsI	GCNGC	4 cut(s)	242, 409, 440, 544
Bme1390I	CCNGG	1 cut(s)	652
Bme18I	GGWCC	2 cut(s)	485, 504
BmgT120I	GGNCC	2 cut(s)	485, 504
BmiI	GGNNCC	2 cut(s)	73, 505
BmrFI	CCNGG	1 cut(s)	652
BmsI	GCATC	2 cut(s)	622, 637
BplI	GAGNNNNNCTC	2 cut(s)	375, 407
Bpu1102I	GCTNAGC	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	154, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	628, 742
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	82, 456
Bse3DI	GCAATG	2 cut(s)	340, 423
BseBI	CCWGG	1 cut(s)	652
BseDI	CCNNGG	2 cut(s)	154, 391
BseGI	GGATG	3 cut(s)	235, 327, 637
BseLI	CCNNNNNNNGG	2 cut(s)	628, 742
BseMI	GCAATG	2 cut(s)	340, 423
BseMII	CTCAG	3 cut(s)	339, 537, 812
BseNI	ACTGG	2 cut(s)	82, 456
BseXI	GCAGC	3 cut(s)	419, 450, 554
BseYI	CCCAGC	1 cut(s)	299
BsgI	GTGCAG	2 cut(s)	164, 608
Bsh1236I	CGCG	2 cut(s)	243, 570
BshFI	GGCC	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	628, 742
BsnI	GGCC	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	187, 420, 665, 786
Bsp1720I	GCTNAGC	1 cut(s)	546
BspACI	CCGC	5 cut(s)	69, 241, 331, 425, 771
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	3 cut(s)	340, 538, 813
BspFNI	CGCG	2 cut(s)	243, 570
BspHI	TCATGA	1 cut(s)	783
BspLI	GGNNCC	2 cut(s)	73, 505
BspMI	ACCTGC	1 cut(s)	630
BspPI	GGATC	2 cut(s)	182, 415
BsrDI	GCAATG	2 cut(s)	340, 423
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	82, 456
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	154, 391
BssMI	GATC	4 cut(s)	187, 420, 665, 786
BssSI	CACGAG	1 cut(s)	626
Bst2BI	CACGAG	1 cut(s)	626
Bst2UI	CCWGG	1 cut(s)	652
Bst4CI	ACNGT	3 cut(s)	223, 259, 712
BstC8I	GCNNGC	4 cut(s)	275, 340, 405, 513
BstDEI	CTNAG	3 cut(s)	348, 546, 821
BstEII	GGTNACC	1 cut(s)	61
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstF5I	GGATG	3 cut(s)	235, 327, 637
BstFNI	CGCG	2 cut(s)	243, 570
BstHHI	GCGC	3 cut(s)	102, 122, 245
BstKTI	GATC	4 cut(s)	190, 423, 668, 789
BstMBI	GATC	4 cut(s)	187, 420, 665, 786
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 339, 413, 576
BstNI	CCWGG	1 cut(s)	652
BstNSI	RCATGY	2 cut(s)	494, 515
BstPI	GGTNACC	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	650
BstSFI	CTRYAG	1 cut(s)	516
BstUI	CGCG	2 cut(s)	243, 570
BstV1I	GCAGC	3 cut(s)	419, 450, 554
BstX2I	RGATCY	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	3 cut(s)	235, 327, 637
BtsIMutI	CAGTG	4 cut(s)	75, 255, 463, 818
BveI	ACCTGC	1 cut(s)	630
Cac8I	GCNNGC	4 cut(s)	275, 340, 405, 513
CciI	TCATGA	1 cut(s)	783
CfoI	GCGC	3 cut(s)	102, 122, 245
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	485, 504
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	4 cut(s)	116, 491, 512, 784
DdeI	CTNAG	3 cut(s)	348, 546, 821
DpnI	GATC	4 cut(s)	189, 422, 667, 788
DpnII	GATC	4 cut(s)	187, 420, 665, 786
EciI	GGCGGA	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	342
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	2 cut(s)	485, 504
Eco91I	GGTNACC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoO65I	GGTNACC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	650
EcoRV	GATATC	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	496
FaeI	CATG	4 cut(s)	119, 494, 515, 787
FatI	CATG	4 cut(s)	115, 490, 511, 783
FauI	CCCGC	2 cut(s)	432, 764
Fnu4HI	GCNGC	4 cut(s)	241, 408, 439, 543
FokI	GGATG	3 cut(s)	242, 314, 644
Fsp4HI	GCNGC	4 cut(s)	241, 408, 439, 543
FspBI	CTAG	2 cut(s)	411, 473
GlaI	GCGC	3 cut(s)	101, 121, 244
GluI	GCNGC	4 cut(s)	241, 408, 439, 543
GsaI	CCCAGC	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	3 cut(s)	102, 122, 245
Hin1II	CATG	4 cut(s)	119, 494, 515, 787
Hin6I	GCGC	3 cut(s)	100, 120, 243
HinP1I	GCGC	3 cut(s)	100, 120, 243
HincII	GTYRAC	2 cut(s)	292, 574
HindII	GTYRAC	2 cut(s)	292, 574
HinfI	GANTC	5 cut(s)	173, 556, 755, 811, 825
HpaI	GTTAAC	1 cut(s)	574
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	2 cut(s)	73, 611
Hpy166II	GTNNAC	2 cut(s)	292, 574
Hpy188I	TCNGA	5 cut(s)	27, 349, 357, 395, 665
Hpy188III	TCNNGA	3 cut(s)	34, 323, 784
Hpy8I	GTNNAC	2 cut(s)	292, 574
Hpy99I	CGWCG	2 cut(s)	604, 794
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	3 cut(s)	223, 259, 712
HpyCH4IV	ACGT	2 cut(s)	375, 537
HpyCH4V	TGCA	7 cut(s)	145, 338, 494, 542, 593, 625, 694
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 339, 413, 576
HpyF3I	CTNAG	3 cut(s)	348, 546, 821
HpySE526I	ACGT	2 cut(s)	375, 537
Hsp92II	CATG	4 cut(s)	119, 494, 515, 787
HspAI	GCGC	3 cut(s)	100, 120, 243
KspAI	GTTAAC	1 cut(s)	574
Kzo9I	GATC	4 cut(s)	187, 420, 665, 786
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	3 cut(s)	419, 450, 554
LweI	GCATC	2 cut(s)	622, 637
MaeI	CTAG	2 cut(s)	411, 473
MaeII	ACGT	2 cut(s)	375, 537
MaeIII	GTNAC	3 cut(s)	61, 217, 749
MalI	GATC	4 cut(s)	189, 422, 667, 788
MboI	GATC	4 cut(s)	187, 420, 665, 786
MboII	GAAGA	1 cut(s)	656
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	1 cut(s)	604
MluI	ACGCGT	1 cut(s)	568
MlyI	GAGTC	2 cut(s)	764, 834
MnlI	CCTC	8 cut(s)	30, 164, 188, 220, 401, 470, 622, 746
Mph1103I	ATGCAT	1 cut(s)	496
MseI	TTAA	2 cut(s)	372, 573
MslI	CAYNNNNRTG	4 cut(s)	114, 213, 630, 806
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	652
MvaI	CCWGG	1 cut(s)	652
MvnI	CGCG	2 cut(s)	243, 570
MwoI	GCNNNNNNNGC	4 cut(s)	99, 339, 413, 576
NdeII	GATC	4 cut(s)	187, 420, 665, 786
NlaIII	CATG	4 cut(s)	119, 494, 515, 787
NlaIV	GGNNCC	2 cut(s)	73, 505
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	3 cut(s)	61, 217, 749
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	2 cut(s)	494, 515
OliI	CACNNNNGTG	1 cut(s)	806
PaeI	GCATGC	1 cut(s)	515
PagI	TCATGA	1 cut(s)	783
PaqCI	CACCTGC	1 cut(s)	630
PceI	AGGCCT	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PfeI	GAWTC	3 cut(s)	173, 556, 811
PkrI	GCNGC	4 cut(s)	242, 409, 440, 544
PleI	GAGTC	2 cut(s)	763, 833
PpsI	GAGTC	2 cut(s)	763, 833
Psp1406I	AACGTT	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	650
PspEI	GGTNACC	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	650
PspN4I	GGNNCC	2 cut(s)	73, 505
PspPI	GGNCC	2 cut(s)	485, 504
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	545
RseI	CAYNNNNRTG	4 cut(s)	114, 213, 630, 806
SaqAI	TTAA	2 cut(s)	372, 573
SatI	GCNGC	4 cut(s)	241, 408, 439, 543
Sau3AI	GATC	4 cut(s)	187, 420, 665, 786
Sau96I	GGNCC	2 cut(s)	485, 504
SchI	GAGTC	2 cut(s)	764, 834
ScrFI	CCNGG	1 cut(s)	652
SfaNI	GCATC	2 cut(s)	622, 637
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	2 cut(s)	485, 504
SmiMI	CAYNNNNRTG	4 cut(s)	114, 213, 630, 806
SphI	GCATGC	1 cut(s)	515
Sse9I	AATT	1 cut(s)	604
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	5 cut(s)	69, 241, 331, 425, 771
SspMI	CTAG	2 cut(s)	411, 473
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	650
TaaI	ACNGT	3 cut(s)	223, 259, 712
TaiI	ACGT	2 cut(s)	378, 540
TaqI	TCGA	3 cut(s)	261, 677, 789
TasI	AATT	1 cut(s)	604
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	3 cut(s)	173, 556, 811
Tru1I	TTAA	2 cut(s)	372, 573
Tru9I	TTAA	2 cut(s)	372, 573
TscAI	CASTG	4 cut(s)	82, 262, 463, 825
TseFI	GTSAC	3 cut(s)	61, 217, 749
TseI	GCWGC	3 cut(s)	407, 438, 542
Tsp45I	GTSAC	3 cut(s)	61, 217, 749
TspDTI	ATGAA	1 cut(s)	413
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	4 cut(s)	82, 262, 463, 825
VpaK11BI	GGWCC	2 cut(s)	485, 504
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	1 cut(s)	604
XceI	RCATGY	2 cut(s)	494, 515
XspI	CTAG	2 cut(s)	411, 473
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.