Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Reverse (-)

7257638 .. 7260861

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG041600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTTCAATGTTTTTCTTCTCCTCAGGTTACTAGGGAAAGTTGCATTGGTGACCGGTGGAGCCACTGGGATTGGAGAGAGCATTGTCCGCCTATTCCACAAACATGGTGCAAAAGTTTGCTTAGTTGATGTGCAGGACAACTTGGGATTGCCAGTCTGCGAGTCTCTTGGCGGCGACGCAAATGTTTGTTATTTCCATTGTGATGTCACAAAAGAAGCTGATGTTAGCGGTGCAGTTGATTTCACAGTTGATAAGTATGGCACACTTGATATCATGGTCAACAATGCTGGGGTGTCAGGTTCACCCTGTCCTGATATCCGCAATGCAGACTTATCTGAATTTGAGAAGGTGTTCGATATTAATGTGAAGGGAGTTTTCCATGGAATGAAACACGCAGCTAGGATGATGATCCCTCTGAAAAAGGGTAGTATCATTTCTCTTTGCAGTGTTTCAAGCACTACAGGAGGCCTAGGACCGCATGCATACACAGGGTCCAAGCACGCTGTGTTGGGGCTGACCAAGAATGTTGCTGCTGAGCTTGGAATTCATGGCATACGTGTTAACTGTGTCTCTCCTTATGCAGTGGCGACTAATTTGGCTTTGGCTCACTTGGCTGAGGAAGAGAGAACCGAAGATGCCTGGACAGGGTTCCGGGATTTCGTAGGGAGACATGCCAATTTGCAGGGAGTGGAATTGACAGTTGATGATGTTGCAAATGCTGTGCTTTTCTTAGCAAGTGATGAGTCCAGGTATATAAGTGGGGATAATCTCATGATTGATGGTGGACTCACGTGCGTGAATCACTCTCTTAGAGTCTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

274

Amino Acids

29.19

Weight (kDa)

5.85

Isoelectric Point (pI)

17.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	13 - 200	8.8e-51	short chain dehydrogenase
KR	PF08659	15 - 172	5.5e-07	KR domain
adh_short_C2	PF13561	21 - 264	1.7e-59	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	88, 171, 228, 319, 476
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	338, 543
AcuI	CTGAAG	1 cut(s)	802
AcvI	CACGTG	1 cut(s)	792
AdeI	CACNNNGTG	1 cut(s)	505
AfiI	CCNNNNNNNGG	1 cut(s)	645
AflIII	ACRYGT	1 cut(s)	556
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	7, 453
AjnI	CCWGG	2 cut(s)	638, 746
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AleI	CACNNNNGTG	1 cut(s)	794
AluBI	AGCT	3 cut(s)	218, 398, 538
AluI	AGCT	3 cut(s)	218, 398, 538
Alw26I	GTCTC	3 cut(s)	168, 574, 661
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	2 cut(s)	395, 530
ApoI	RAATTY	2 cut(s)	338, 543
AseI	ATTAAT	1 cut(s)	360
AsiGI	ACCGGT	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	350
AspA2I	CCTAGG	1 cut(s)	469
AspS9I	GGNCC	2 cut(s)	473, 492
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	61, 294
AvaII	GGWCC	2 cut(s)	473, 492
AvrII	CCTAGG	1 cut(s)	469
AxyI	CCTNAGG	1 cut(s)	23
BbrPI	CACGTG	1 cut(s)	792
BbsI	GAAGAC	1 cut(s)	808
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	2 cut(s)	407, 517
BccI	CCATC	1 cut(s)	773
BciT130I	CCWGG	2 cut(s)	640, 748
BcnI	CCSGG	1 cut(s)	653
BcoDI	GTCTC	3 cut(s)	168, 574, 661
BfaI	CTAG	3 cut(s)	32, 399, 470
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	3 cut(s)	172, 396, 531
BlnI	CCTAGG	1 cut(s)	469
BlpI	GCTNAGC	1 cut(s)	534
BlsI	GCNGC	3 cut(s)	173, 397, 532
Bme1390I	CCNGG	3 cut(s)	640, 653, 748
Bme18I	GGWCC	2 cut(s)	473, 492
BmgT120I	GGNCC	2 cut(s)	473, 492
BmiI	GGNNCC	3 cut(s)	61, 493, 650
BmrFI	CCNGG	3 cut(s)	640, 653, 748
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	625
BmuI	ACTGGG	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	808
Bpu10I	CCTNAGC	1 cut(s)	615
Bpu1102I	GCTNAGC	1 cut(s)	534
BpuMI	CCSGG	1 cut(s)	653
BsaAI	YACGTR	2 cut(s)	557, 792
BsaBI	GATNNNNATC	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	379, 469
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	645
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	70, 152
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	328
Bse8I	GATNNNNATC	1 cut(s)	407
BseBI	CCWGG	2 cut(s)	640, 748
BseDI	CCNNGG	2 cut(s)	379, 469
BseGI	GGATG	1 cut(s)	408
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	1 cut(s)	645
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	3 cut(s)	37, 525, 606
BseNI	ACTGG	2 cut(s)	70, 152
BseRI	GAGGAG	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	407, 517
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	2 cut(s)	152, 252
BshFI	GGCC	1 cut(s)	468
BshTI	ACCGGT	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	54, 652
BslI	CCNNNNNNNGG	1 cut(s)	645
BsmAI	GTCTC	3 cut(s)	168, 574, 661
BsnI	GGCC	1 cut(s)	468
Bsp143I	GATC	1 cut(s)	408
Bsp1720I	GCTNAGC	1 cut(s)	534
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	5 cut(s)	88, 171, 228, 319, 476
BspANI	GGCC	1 cut(s)	468
BspCNI	CTCAG	3 cut(s)	36, 526, 607
BspHI	TCATGA	1 cut(s)	771
BspLI	GGNNCC	3 cut(s)	61, 493, 650
BspPI	GGATC	1 cut(s)	403
BsrDI	GCAATG	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	70, 152
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	379, 469
BssMI	GATC	1 cut(s)	408
BssT1I	CCWWGG	2 cut(s)	379, 469
Bst2UI	CCWGG	2 cut(s)	640, 748
Bst4CI	ACNGT	3 cut(s)	247, 566, 700
Bst6I	CTCTTC	1 cut(s)	615
BstBAI	YACGTR	2 cut(s)	557, 792
BstC8I	GCNNGC	2 cut(s)	480, 501
BstDEI	CTNAG	6 cut(s)	23, 121, 534, 615, 730, 809
BstDSI	CCRYGG	1 cut(s)	379
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	408
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	3 cut(s)	168, 574, 661
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 611
BstNI	CCWGG	2 cut(s)	640, 748
BstNSI	RCATGY	2 cut(s)	482, 674
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	3 cut(s)	638, 651, 746
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	2 cut(s)	407, 517
BstV2I	GAAGAC	1 cut(s)	808
BstXI	CCANNNNNNTGG	1 cut(s)	104
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	468
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	408
BtsI	GCAGTG	2 cut(s)	451, 588
BtsIMutI	CAGTG	3 cut(s)	63, 451, 588
Cac8I	GCNNGC	2 cut(s)	480, 501
CciI	TCATGA	1 cut(s)	771
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	473, 492
CseI	GACGC	1 cut(s)	185
CspAI	ACCGGT	1 cut(s)	53
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	7 cut(s)	104, 274, 380, 479, 548, 671, 772
CviJI	RGCY	9 cut(s)	62, 218, 398, 468, 514, 538, 599, 605, 614
CviKI_1	RGCY	9 cut(s)	62, 218, 398, 468, 514, 538, 599, 605, 614
DdeI	CTNAG	6 cut(s)	23, 121, 534, 615, 730, 809
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
DraIII	CACNNNGTG	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	379, 469
Eco147I	AGGCCT	1 cut(s)	468
Eco32I	GATATC	2 cut(s)	271, 316
Eco47I	GGWCC	2 cut(s)	473, 492
Eco57I	CTGAAG	1 cut(s)	802
Eco72I	CACGTG	1 cut(s)	792
Eco81I	CCTNAGG	1 cut(s)	23
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	543
EcoRII	CCWGG	2 cut(s)	638, 746
EcoRV	GATATC	2 cut(s)	271, 316
EcoT14I	CCWWGG	2 cut(s)	379, 469
EcoT22I	ATGCAT	1 cut(s)	484
ErhI	CCWWGG	2 cut(s)	379, 469
FaeI	CATG	7 cut(s)	107, 277, 383, 482, 551, 674, 775
FatI	CATG	7 cut(s)	103, 273, 379, 478, 547, 670, 771
Fnu4HI	GCNGC	3 cut(s)	172, 396, 531
FokI	GGATG	1 cut(s)	415
Fsp4HI	GCNGC	3 cut(s)	172, 396, 531
FspBI	CTAG	3 cut(s)	32, 399, 470
GluI	GCNGC	3 cut(s)	172, 396, 531
GsaI	CCCAGC	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	468
HapII	CCGG	2 cut(s)	54, 652
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	7 cut(s)	107, 277, 383, 482, 551, 674, 775
HincII	GTYRAC	2 cut(s)	280, 562
HindII	GTYRAC	2 cut(s)	280, 562
HinfI	GANTC	5 cut(s)	161, 743, 786, 799, 813
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	2 cut(s)	54, 652
HphI	GGTGA	2 cut(s)	61, 294
Hpy166II	GTNNAC	4 cut(s)	280, 302, 562, 785
Hpy188I	TCNGA	3 cut(s)	337, 417, 821
Hpy188III	TCNNGA	2 cut(s)	311, 772
Hpy8I	GTNNAC	4 cut(s)	280, 302, 562, 785
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	340, 361
HpyCH4III	ACNGT	3 cut(s)	247, 566, 700
HpyCH4IV	ACGT	2 cut(s)	556, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 611
HpyF3I	CTNAG	6 cut(s)	23, 121, 534, 615, 730, 809
HpySE526I	ACGT	2 cut(s)	556, 791
Hsp92II	CATG	7 cut(s)	107, 277, 383, 482, 551, 674, 775
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	2 cut(s)	407, 517
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	3 cut(s)	32, 399, 470
MaeII	ACGT	2 cut(s)	556, 791
MaeIII	GTNAC	3 cut(s)	27, 49, 205
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	4 cut(s)	8, 632, 644, 808
MluCI	AATT	5 cut(s)	338, 543, 592, 676, 692
MlyI	GAGTC	4 cut(s)	170, 752, 780, 822
MnlI	CCTC	4 cut(s)	32, 423, 458, 610
Mph1103I	ATGCAT	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	2 cut(s)	360, 561
MslI	CAYNNNNRTG	3 cut(s)	102, 201, 794
MspI	CCGG	2 cut(s)	54, 652
MspR9I	CCNGG	3 cut(s)	640, 653, 748
MvaI	CCWGG	2 cut(s)	640, 748
MwoI	GCNNNNNNNGC	2 cut(s)	87, 611
NciI	CCSGG	1 cut(s)	653
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	7 cut(s)	107, 277, 383, 482, 551, 674, 775
NlaIV	GGNNCC	3 cut(s)	61, 493, 650
NmuCI	GTSAC	2 cut(s)	49, 205
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	2 cut(s)	482, 674
OliI	CACNNNNGTG	1 cut(s)	794
PaeI	GCATGC	1 cut(s)	482
PagI	TCATGA	1 cut(s)	771
PceI	AGGCCT	1 cut(s)	468
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	799
PfoI	TCCNGGA	1 cut(s)	651
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	173, 397, 532
PleI	GAGTC	4 cut(s)	169, 751, 780, 821
PmaCI	CACGTG	1 cut(s)	792
PmlI	CACGTG	1 cut(s)	792
PpsI	GAGTC	4 cut(s)	169, 751, 780, 821
Ppu21I	YACGTR	2 cut(s)	557, 792
PshBI	ATTAAT	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	638, 746
PspCI	CACGTG	1 cut(s)	792
PspEI	GGTNACC	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	638, 746
PspN4I	GGNNCC	3 cut(s)	61, 493, 650
PspPI	GGNCC	2 cut(s)	473, 492
RseI	CAYNNNNRTG	3 cut(s)	102, 201, 794
SaqAI	TTAA	2 cut(s)	360, 561
SatI	GCNGC	3 cut(s)	172, 396, 531
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	2 cut(s)	473, 492
SchI	GAGTC	4 cut(s)	170, 752, 780, 822
ScrFI	CCNGG	3 cut(s)	640, 653, 748
SetI	ASST	9 cut(s)	29, 220, 301, 351, 400, 540, 559, 752, 794
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	2 cut(s)	473, 492
SmiMI	CAYNNNNRTG	3 cut(s)	102, 201, 794
SphI	GCATGC	1 cut(s)	482
Sse9I	AATT	5 cut(s)	338, 543, 592, 676, 692
SseBI	AGGCCT	1 cut(s)	468
SsiI	CCGC	5 cut(s)	88, 171, 228, 319, 476
SspMI	CTAG	3 cut(s)	32, 399, 470
StuI	AGGCCT	1 cut(s)	468
StyD4I	CCNGG	3 cut(s)	638, 651, 746
StyI	CCWWGG	2 cut(s)	379, 469
TaaI	ACNGT	3 cut(s)	247, 566, 700
TaiI	ACGT	2 cut(s)	559, 794
TaqI	TCGA	1 cut(s)	354
TasI	AATT	5 cut(s)	338, 543, 592, 676, 692
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	799
Tru1I	TTAA	2 cut(s)	360, 561
Tru9I	TTAA	2 cut(s)	360, 561
TscAI	CASTG	3 cut(s)	70, 451, 588
TseFI	GTSAC	2 cut(s)	49, 205
TseI	GCWGC	2 cut(s)	395, 530
Tsp45I	GTSAC	2 cut(s)	49, 205
TspDTI	ATGAA	2 cut(s)	401, 536
TspRI	CASTG	3 cut(s)	70, 451, 588
VpaK11BI	GGWCC	2 cut(s)	473, 492
VspI	ATTAAT	1 cut(s)	360
XapI	RAATTY	2 cut(s)	338, 543
XceI	RCATGY	2 cut(s)	482, 674
XmaJI	CCTAGG	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	3 cut(s)	32, 399, 470
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.