Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011458

Physical Location & Seq

Genomic Coordinates Reverse (-)

7956550 .. 7959777

Gene Structure 3228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG042500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTTCAATGTTTTTCTTCTCCTCAGGTTACTAGGGAAAGTTGCATTGGTGACCGGTGGAGCCACTGGGATTGGAGAGAGCATTGTCCGCCTATTCCACAAACATGGTGCAAAAGTTTGCTTAGTTGATGTGCAGGACAACTTGGGATTGCCAGTCTGCGAGTCTCTTGGCGGCGACGCAAATGTTTGTTATTTCCATTGTGATGTCACAAAAGAAGCTGATGTTAGCGGTGCAGTTGATTTCACAGTTGATAAGTATGGCACACTTGATATCATGGTCAACAATGCTGGGGTGTCAGGTTCACCCTGTCCTGATATCCGCAATGCAGACTTATCTGAATTTGAGAAGGTGTTCGATATTAATGTGAAGGGAGTTTTCCACGGAATGAAACACGCAGCTAGGATGATGATCCCTCTGAAAAAGGGTAGTATCATTTCTCTTTGCAGTGTTTCAAGCACTACAGGAGGCCTAGGACCGCATGCATACACAGGGTCCAAGCACGCTGTGTTGGGGCTGACCAAGAATGTTGCTGCTGAGCTTGGAATTCATGGCATACGTGTTAACTGTGTCTCTCCTTATGCAGTGGCGACTAATTTGGCTTTGGCTCACTTGGCTGAGGAAGAGAGAACCGAAGATGCCTGGACAGGGTTCCGGGATTTCGTAGGGAGACATGCCAATTTGCAGGGAGTGGAATTGACAGTTGATGATGTTGCAAATGCTGTGCTTTTCTTAGCAAGTGATGAGTCCAGGTATATAAGTGGGGATAATCTCATGATTGATGGTGGACTCACGTGCGTGAATCACTCGCTTAGAGTCTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004022 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009688 GO:0009743 GO:0009746 GO:0009750 GO:0009756 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010115 GO:0010182 GO:0010301 GO:0010565 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019216 GO:0019222 GO:0019747 GO:0019752 GO:0023052 GO:0031323 GO:0031326 GO:0032787 GO:0034284 GO:0042221 GO:0043288 GO:0043289 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0046483 GO:0046890 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645 GO:1902930

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

274

Amino Acids

29.19

Weight (kDa)

5.85

Isoelectric Point (pI)

17.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	13 - 200	8.8e-51	short chain dehydrogenase
KR	PF08659	15 - 172	5.5e-07	KR domain
adh_short_C2	PF13561	21 - 264	1.7e-59	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52340
fragaria_vesca	FvH4_7g02370
malus_domestica	MD02G1293600.v1.1 MD07G1033100.v1.1 MD07G1033200.v1.1
prunus_persica	Prupe.2G029900_v2.0.a1
pyrus_communis	pycom02g24760 pycom07g02330 pycom07g02340
rosa_chinensis	RchiOBHm_Chr1g0319721
rosa_laevigata	RLG00000030461
rosa_multiflora	Rmu_sc0002539.1_g000115 Rmu_sc0014135.1_g000001
rosa_roxburghii	Rroxscaffold_4G00328160
rosa_rugosa	Rorug01G0029700
rosa_samantha	Rh1AG041600 Rh1BG038900 Rh1CG042500 Rh1DG027100
rosa_wichuraiana	Rw1G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	88, 171, 228, 319, 476
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	338, 543
AcuI	CTGAAG	1 cut(s)	802
AcvI	CACGTG	1 cut(s)	792
AdeI	CACNNNGTG	1 cut(s)	505
AfiI	CCNNNNNNNGG	1 cut(s)	645
AflIII	ACRYGT	1 cut(s)	556
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	7, 453
AjnI	CCWGG	2 cut(s)	638, 746
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AleI	CACNNNNGTG	1 cut(s)	794
AluBI	AGCT	3 cut(s)	218, 398, 538
AluI	AGCT	3 cut(s)	218, 398, 538
Alw26I	GTCTC	3 cut(s)	168, 574, 661
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	2 cut(s)	395, 530
ApoI	RAATTY	2 cut(s)	338, 543
AseI	ATTAAT	1 cut(s)	360
AsiGI	ACCGGT	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	350
AspA2I	CCTAGG	1 cut(s)	469
AspS9I	GGNCC	2 cut(s)	473, 492
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	61, 294
AvaII	GGWCC	2 cut(s)	473, 492
AvrII	CCTAGG	1 cut(s)	469
AxyI	CCTNAGG	1 cut(s)	23
BbrPI	CACGTG	1 cut(s)	792
BbsI	GAAGAC	1 cut(s)	808
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	2 cut(s)	407, 517
BccI	CCATC	1 cut(s)	773
BciT130I	CCWGG	2 cut(s)	640, 748
BcnI	CCSGG	1 cut(s)	653
BcoDI	GTCTC	3 cut(s)	168, 574, 661
BfaI	CTAG	3 cut(s)	32, 399, 470
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	3 cut(s)	172, 396, 531
BlnI	CCTAGG	1 cut(s)	469
BlpI	GCTNAGC	1 cut(s)	534
BlsI	GCNGC	3 cut(s)	173, 397, 532
Bme1390I	CCNGG	3 cut(s)	640, 653, 748
Bme18I	GGWCC	2 cut(s)	473, 492
BmgT120I	GGNCC	2 cut(s)	473, 492
BmiI	GGNNCC	3 cut(s)	61, 493, 650
BmrFI	CCNGG	3 cut(s)	640, 653, 748
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	625
BmuI	ACTGGG	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	808
Bpu10I	CCTNAGC	1 cut(s)	615
Bpu1102I	GCTNAGC	1 cut(s)	534
BpuMI	CCSGG	1 cut(s)	653
BsaAI	YACGTR	2 cut(s)	557, 792
BsaBI	GATNNNNATC	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	379, 469
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	645
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	70, 152
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	328
Bse8I	GATNNNNATC	1 cut(s)	407
BseBI	CCWGG	2 cut(s)	640, 748
BseDI	CCNNGG	2 cut(s)	379, 469
BseGI	GGATG	1 cut(s)	408
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	1 cut(s)	645
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	3 cut(s)	37, 525, 606
BseNI	ACTGG	2 cut(s)	70, 152
BseRI	GAGGAG	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	407, 517
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	2 cut(s)	152, 252
BshFI	GGCC	1 cut(s)	468
BshTI	ACCGGT	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	54, 652
BslI	CCNNNNNNNGG	1 cut(s)	645
BsmAI	GTCTC	3 cut(s)	168, 574, 661
BsnI	GGCC	1 cut(s)	468
Bsp143I	GATC	1 cut(s)	408
Bsp1720I	GCTNAGC	1 cut(s)	534
BspACI	CCGC	5 cut(s)	88, 171, 228, 319, 476
BspANI	GGCC	1 cut(s)	468
BspCNI	CTCAG	3 cut(s)	36, 526, 607
BspHI	TCATGA	1 cut(s)	771
BspLI	GGNNCC	3 cut(s)	61, 493, 650
BspPI	GGATC	1 cut(s)	403
BsrDI	GCAATG	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	70, 152
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	379, 469
BssMI	GATC	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	469
Bst2UI	CCWGG	2 cut(s)	640, 748
Bst4CI	ACNGT	3 cut(s)	247, 566, 700
Bst6I	CTCTTC	1 cut(s)	615
BstBAI	YACGTR	2 cut(s)	557, 792
BstC8I	GCNNGC	2 cut(s)	480, 501
BstDEI	CTNAG	6 cut(s)	23, 121, 534, 615, 730, 809
BstDSI	CCRYGG	1 cut(s)	379
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	408
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	3 cut(s)	168, 574, 661
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 611
BstNI	CCWGG	2 cut(s)	640, 748
BstNSI	RCATGY	2 cut(s)	482, 674
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	3 cut(s)	638, 651, 746
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	2 cut(s)	407, 517
BstV2I	GAAGAC	1 cut(s)	808
BstXI	CCANNNNNNTGG	1 cut(s)	104
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	468
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	408
BtsI	GCAGTG	2 cut(s)	451, 588
BtsIMutI	CAGTG	3 cut(s)	63, 451, 588
Cac8I	GCNNGC	2 cut(s)	480, 501
CciI	TCATGA	1 cut(s)	771
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	473, 492
CseI	GACGC	1 cut(s)	185
CspAI	ACCGGT	1 cut(s)	53
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	6 cut(s)	104, 274, 479, 548, 671, 772
CviJI	RGCY	9 cut(s)	62, 218, 398, 468, 514, 538, 599, 605, 614
CviKI_1	RGCY	9 cut(s)	62, 218, 398, 468, 514, 538, 599, 605, 614
DdeI	CTNAG	6 cut(s)	23, 121, 534, 615, 730, 809
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
DraIII	CACNNNGTG	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	469
Eco147I	AGGCCT	1 cut(s)	468
Eco32I	GATATC	2 cut(s)	271, 316
Eco47I	GGWCC	2 cut(s)	473, 492
Eco57I	CTGAAG	1 cut(s)	802
Eco72I	CACGTG	1 cut(s)	792
Eco81I	CCTNAGG	1 cut(s)	23
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	543
EcoRII	CCWGG	2 cut(s)	638, 746
EcoRV	GATATC	2 cut(s)	271, 316
EcoT14I	CCWWGG	1 cut(s)	469
EcoT22I	ATGCAT	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	6 cut(s)	107, 277, 482, 551, 674, 775
FatI	CATG	6 cut(s)	103, 273, 478, 547, 670, 771
Fnu4HI	GCNGC	3 cut(s)	172, 396, 531
FokI	GGATG	1 cut(s)	415
Fsp4HI	GCNGC	3 cut(s)	172, 396, 531
FspBI	CTAG	3 cut(s)	32, 399, 470
GluI	GCNGC	3 cut(s)	172, 396, 531
GsaI	CCCAGC	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	468
HapII	CCGG	2 cut(s)	54, 652
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	6 cut(s)	107, 277, 482, 551, 674, 775
HincII	GTYRAC	2 cut(s)	280, 562
HindII	GTYRAC	2 cut(s)	280, 562
HinfI	GANTC	5 cut(s)	161, 743, 786, 799, 813
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	2 cut(s)	54, 652
HphI	GGTGA	2 cut(s)	61, 294
Hpy166II	GTNNAC	4 cut(s)	280, 302, 562, 785
Hpy188I	TCNGA	3 cut(s)	337, 417, 821
Hpy188III	TCNNGA	2 cut(s)	311, 772
Hpy8I	GTNNAC	4 cut(s)	280, 302, 562, 785
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	340, 361
HpyCH4III	ACNGT	3 cut(s)	247, 566, 700
HpyCH4IV	ACGT	2 cut(s)	556, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 611
HpyF3I	CTNAG	6 cut(s)	23, 121, 534, 615, 730, 809
HpySE526I	ACGT	2 cut(s)	556, 791
Hsp92II	CATG	6 cut(s)	107, 277, 482, 551, 674, 775
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	2 cut(s)	407, 517
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	3 cut(s)	32, 399, 470
MaeII	ACGT	2 cut(s)	556, 791
MaeIII	GTNAC	3 cut(s)	27, 49, 205
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	4 cut(s)	8, 632, 644, 808
MluCI	AATT	5 cut(s)	338, 543, 592, 676, 692
MlyI	GAGTC	4 cut(s)	170, 752, 780, 822
MnlI	CCTC	4 cut(s)	32, 423, 458, 610
Mph1103I	ATGCAT	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	2 cut(s)	360, 561
MslI	CAYNNNNRTG	3 cut(s)	102, 201, 794
MspI	CCGG	2 cut(s)	54, 652
MspR9I	CCNGG	3 cut(s)	640, 653, 748
MvaI	CCWGG	2 cut(s)	640, 748
MwoI	GCNNNNNNNGC	2 cut(s)	87, 611
NciI	CCSGG	1 cut(s)	653
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	6 cut(s)	107, 277, 482, 551, 674, 775
NlaIV	GGNNCC	3 cut(s)	61, 493, 650
NmuCI	GTSAC	2 cut(s)	49, 205
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	2 cut(s)	482, 674
OliI	CACNNNNGTG	1 cut(s)	794
PaeI	GCATGC	1 cut(s)	482
PagI	TCATGA	1 cut(s)	771
PceI	AGGCCT	1 cut(s)	468
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	799
PfoI	TCCNGGA	1 cut(s)	651
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	173, 397, 532
PleI	GAGTC	4 cut(s)	169, 751, 780, 821
PmaCI	CACGTG	1 cut(s)	792
PmlI	CACGTG	1 cut(s)	792
PpsI	GAGTC	4 cut(s)	169, 751, 780, 821
Ppu21I	YACGTR	2 cut(s)	557, 792
PshBI	ATTAAT	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	638, 746
PspCI	CACGTG	1 cut(s)	792
PspEI	GGTNACC	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	638, 746
PspN4I	GGNNCC	3 cut(s)	61, 493, 650
PspPI	GGNCC	2 cut(s)	473, 492
RseI	CAYNNNNRTG	3 cut(s)	102, 201, 794
SaqAI	TTAA	2 cut(s)	360, 561
SatI	GCNGC	3 cut(s)	172, 396, 531
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	2 cut(s)	473, 492
SchI	GAGTC	4 cut(s)	170, 752, 780, 822
ScrFI	CCNGG	3 cut(s)	640, 653, 748
SetI	ASST	9 cut(s)	29, 220, 301, 351, 400, 540, 559, 752, 794
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	2 cut(s)	473, 492
SmiMI	CAYNNNNRTG	3 cut(s)	102, 201, 794
SphI	GCATGC	1 cut(s)	482
Sse9I	AATT	5 cut(s)	338, 543, 592, 676, 692
SseBI	AGGCCT	1 cut(s)	468
SsiI	CCGC	5 cut(s)	88, 171, 228, 319, 476
SspMI	CTAG	3 cut(s)	32, 399, 470
StuI	AGGCCT	1 cut(s)	468
StyD4I	CCNGG	3 cut(s)	638, 651, 746
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	3 cut(s)	247, 566, 700
TaiI	ACGT	2 cut(s)	559, 794
TaqI	TCGA	1 cut(s)	354
TasI	AATT	5 cut(s)	338, 543, 592, 676, 692
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	799
Tru1I	TTAA	2 cut(s)	360, 561
Tru9I	TTAA	2 cut(s)	360, 561
TscAI	CASTG	3 cut(s)	70, 451, 588
TseFI	GTSAC	2 cut(s)	49, 205
TseI	GCWGC	2 cut(s)	395, 530
Tsp45I	GTSAC	2 cut(s)	49, 205
TspDTI	ATGAA	2 cut(s)	401, 536
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	3 cut(s)	70, 451, 588
VpaK11BI	GGWCC	2 cut(s)	473, 492
VspI	ATTAAT	1 cut(s)	360
XapI	RAATTY	2 cut(s)	338, 543
XceI	RCATGY	2 cut(s)	482, 674
XmaJI	CCTAGG	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	3 cut(s)	32, 399, 470
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.