AT1G52565

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004314
Physical Location & Seq
Reverse (-)
19579839 .. 19580977
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52565.1

Sequence Viewer

Length: 390 bp
ATGACTTGTATACTAAGCTGTTCTCATGGCGTCGTGATCGCAACCGCCATGGTTTTCTCAAGCACTGCTCTGTTTCTTGCGATTTCCCGCCAATTTTCTGGAAATCAGACATCAGATCAACAAATCCTCCGTTCTTGTCTTTCTTCAGAGGAAAAGAAGAAACAGAGGAAGAATAAGAAGAAGAAAGTGAAATTTGCAGAGAATGTGAAAGAGACGAAAGGTAACGGTGAAGAGTATCGTAAGAAGAGTCTTCGGCGAATTGTACCGGAACAGATGATTAAACCTGAGAAAACCGGTTCGGTTTGTAGAAACGACATGCCTGCTAACCGGATTGCATTGTACAATGGGATTCTTAGAGACAGAGATCATCGAATTCAGTGCTCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.73

Weight (kDa)

9.94

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 10
AciI CCGC 2 cut(s) 45, 88
AcsI RAATTY 2 cut(s) 191, 372
AcuI CTGAAG 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 2 cut(s) 264, 341
AgeI ACCGGT 1 cut(s) 293
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw21I GWGCWC 1 cut(s) 383
Alw26I GTCTC 2 cut(s) 206, 351
ApoI RAATTY 2 cut(s) 191, 372
AsiGI ACCGGT 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 383
BcgI CGANNNNNNTGC 3 cut(s) 302, 336, 360
BcoDI GTCTC 2 cut(s) 206, 351
BpiI GAAGAC 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 3 cut(s) 265, 293, 327
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bse118I RCCGGY 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 276
BshTI ACCGGT 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 383
BsiSI CCGG 3 cut(s) 266, 294, 328
BsmAI GTCTC 2 cut(s) 206, 351
BsmBI CGTCTC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 383
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 3 cut(s) 36, 115, 364
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 2 cut(s) 45, 88
BspCNI CTCAG 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 3 cut(s) 36, 115, 364
BssNAI GTATAC 1 cut(s) 11
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 48
Bst1107I GTATAC 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 2 cut(s) 225, 239
BstACI GRCGYC 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 3 cut(s) 14, 285, 353
BstDSI CCRYGG 1 cut(s) 48
BstKTI GATC 3 cut(s) 39, 118, 367
BstMAI GTCTC 2 cut(s) 206, 351
BstMBI GATC 3 cut(s) 36, 115, 364
BstNSI RCATGY 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 242
BstXI CCANNNNNNTGG 1 cut(s) 98
BstZ17I GTATAC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 63, 383
Cac8I GCNNGC 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 293
CseI GACGC 1 cut(s) 19
Csp6I GTAC 2 cut(s) 263, 340
CspAI ACCGGT 1 cut(s) 293
CviAII CATG 3 cut(s) 26, 49, 316
CviJI RGCY 1 cut(s) 18
CviKI_1 RGCY 1 cut(s) 18
CviQI GTAC 2 cut(s) 263, 340
DdeI CTNAG 3 cut(s) 14, 285, 353
DpnI GATC 3 cut(s) 38, 117, 366
DpnII GATC 3 cut(s) 36, 115, 364
Eam1104I CTCTTC 2 cut(s) 225, 239
EarI CTCTTC 2 cut(s) 225, 239
Eco130I CCWWGG 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 129
EcoRI GAATTC 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 3 cut(s) 29, 52, 319
FaiI YATR 4 cut(s) 11, 27, 50, 317
FatI CATG 3 cut(s) 25, 48, 315
FauI CCCGC 1 cut(s) 95
FblI GTMKAC 1 cut(s) 10
HapII CCGG 3 cut(s) 266, 294, 328
HgaI GACGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 3 cut(s) 29, 52, 319
HinfI GANTC 2 cut(s) 247, 349
HpaII CCGG 3 cut(s) 266, 294, 328
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 3 cut(s) 108, 115, 148
Hpy188III TCNNGA 2 cut(s) 34, 99
Hpy8I GTNNAC 1 cut(s) 11
Hpy99I CGWCG 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 2 cut(s) 197, 335
HpyF3I CTNAG 3 cut(s) 14, 285, 353
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 3 cut(s) 29, 52, 319
Kzo9I GATC 3 cut(s) 36, 115, 364
LmnI GCTCC 1 cut(s) 386
LpnPI CCDG 6 cut(s) 84, 279, 297, 307, 333, 341
MaeIII GTNAC 1 cut(s) 221
MalI GATC 3 cut(s) 38, 117, 366
MboI GATC 3 cut(s) 36, 115, 364
MboII GAAGA 8 cut(s) 135, 169, 181, 190, 193, 242, 242, 256
MhlI GDGCHC 1 cut(s) 383
MluCI AATT 4 cut(s) 92, 191, 258, 372
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 3 cut(s) 137, 142, 159
MseI TTAA 1 cut(s) 279
MspI CCGG 3 cut(s) 266, 294, 328
NcoI CCATGG 1 cut(s) 48
NdeII GATC 3 cut(s) 36, 115, 364
NlaIII CATG 3 cut(s) 29, 52, 319
NspI RCATGY 1 cut(s) 319
PfeI GAWTC 1 cut(s) 349
PinAI ACCGGT 1 cut(s) 293
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
RsaI GTAC 2 cut(s) 264, 341
RsaNI GTAC 2 cut(s) 263, 340
SaqAI TTAA 1 cut(s) 279
Sau3AI GATC 3 cut(s) 36, 115, 364
SchI GAGTC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 383
SetI ASST 3 cut(s) 20, 223, 286
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 4 cut(s) 92, 191, 258, 372
SsiI CCGC 2 cut(s) 45, 88
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 370
TasI AATT 4 cut(s) 92, 191, 258, 372
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 2 cut(s) 70, 383
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 2 cut(s) 70, 383
XapI RAATTY 2 cut(s) 191, 372
XceI RCATGY 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.