Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004314

Physical Location & Seq

Genomic Coordinates Reverse (-)

13361859 .. 13362790

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1172200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCTTCAGTGCTGGGCTCTCAAGGGGTGGTTTTGGCCACCGCCATGGCGGTTTCCGGCACCGTCATCCTCCTCGCCCTCCGCCTCCAGAAGTCCCTACCCAATTCTCACGGATACCCAGTTGATCAAATTACCCATCAGTCCTCCCCTCAAATTCTACGATCTTGTATATCTTCTGATGGAAAGAAGAGGAGGAAGAAGAACAAGAGGGTGCACTTTGCAGAGGACGTCGTGGATCCGATTGGAGACAATCAGGAGTTTAGACGGCAGCACCAGATAATTCCCACTGCTTTTTCCAAATCTCCAACTTCTTCTTCTGCAACTTCCCAGAAATACAGAGGATCAATGCCCGCAAACCGGGCGGCTCTGTACAATGGAATTCTCAGGGATCGTGGCGGTTACCGGTTGGCCTACTCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPI_Ypi1

Protein Analysis

141

Amino Acids

15.39

Weight (kDa)

10.36

Isoelectric Point (pI)

65.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52565 AT3G15760
fragaria_vesca	FvH4_1g03160 FvH4_6g29910
malus_domestica	MD02G1030600.v1.1 MD15G1172200.v1.1 MD17G1209300.v1.1
prunus_persica	Prupe.3G084900_v2.0.a1 Prupe.7G243900_v2.0.a1
pyrus_communis	pycom02g02550 pycom09g14090 pycom17g21500
rosa_chinensis	RchiOBHm_Chr2g0088291 RchiOBHm_Chr2g0135861
rosa_laevigata	RLG00000015939 RLG00000019488
rosa_multiflora	Rmu_sc0004235.1_g000039 Rmu_sc0007848.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108800 Rroxscaffold_2G00152770
rosa_rugosa	Rorug01G0482600 Rorug02G0326700
rosa_samantha	Rh2AG037700 Rh2AG378200 Rh2BG036900 Rh2BG384600 Rh2CG038000 Rh2CG364000 Rh2DG037400 Rh2DG401100
rosa_wichuraiana	Rw2G002970 Rw2G030810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	59
AciI	CCGC	6 cut(s)	42, 50, 82, 351, 362, 396
AclWI	GGATC	4 cut(s)	230, 243, 349, 396
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	2 cut(s)	153, 378
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgeI	ACCGGT	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	240
Alw44I	GTGCAC	1 cut(s)	212
AlwI	GGATC	4 cut(s)	230, 243, 349, 396
AoxI	GGCC	2 cut(s)	36, 408
ApaLI	GTGCAC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	2 cut(s)	153, 378
AsiGI	ACCGGT	1 cut(s)	402
AsuC2I	CCSGG	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	216
BalI	TGGCCA	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	144, 173
BceAI	ACGGC	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	107
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	107
BisI	GCNGC	2 cut(s)	269, 363
BlsI	GCNGC	2 cut(s)	270, 364
Bme1390I	CCNGG	1 cut(s)	359
BmiI	GGNNCC	2 cut(s)	61, 237
BmrFI	CCNGG	1 cut(s)	359
BmrI	ACTGGG	1 cut(s)	113
BmuI	ACTGGG	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	397
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	2 cut(s)	62, 205
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	1 cut(s)	13
BshFI	GGCC	2 cut(s)	38, 410
BshNI	GGYRCC	1 cut(s)	59
BshTI	ACCGGT	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	57, 358, 403
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	38, 410
Bsp1286I	GDGCHC	2 cut(s)	20, 216
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	5 cut(s)	124, 161, 235, 341, 388
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	6 cut(s)	42, 50, 82, 351, 362, 396
BspANI	GGCC	2 cut(s)	38, 410
BspCNI	CTCAG	1 cut(s)	396
BspLI	GGNNCC	2 cut(s)	61, 237
BspPI	GGATC	4 cut(s)	230, 243, 349, 396
BspT107I	GGYRCC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	402
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	5 cut(s)	124, 161, 235, 341, 388
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	383
BstDSI	CCRYGG	1 cut(s)	45
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	5 cut(s)	127, 164, 238, 344, 391
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	5 cut(s)	124, 161, 235, 341, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	38, 410
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	15, 285
Cac8I	GCNNGC	1 cut(s)	351
Cfr10I	RCCGGY	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	370
CspAI	ACCGGT	1 cut(s)	402
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	4 cut(s)	18, 38, 365, 410
CviKI_1	RGCY	4 cut(s)	18, 38, 365, 410
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	5 cut(s)	126, 163, 237, 343, 390
DpnII	GATC	5 cut(s)	124, 161, 235, 341, 388
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	20
Eco91I	GGTNACC	1 cut(s)	398
EcoO65I	GGTNACC	1 cut(s)	398
EcoRI	GAATTC	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	49
FaiI	YATR	2 cut(s)	47, 170
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	45
FauI	CCCGC	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	269, 363
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	2 cut(s)	269, 363
GluI	GCNGC	2 cut(s)	269, 363
GsaI	CCCAGC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	38, 410
HapII	CCGG	3 cut(s)	57, 358, 403
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	49
HpaII	CCGG	3 cut(s)	57, 358, 403
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	178, 240
Hpy188III	TCNNGA	2 cut(s)	88, 254
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	214, 221, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	124, 161, 235, 341, 388
LpnPI	CCDG	9 cut(s)	70, 101, 132, 239, 287, 341, 370, 371, 416
Lsp1109I	GCAGC	1 cut(s)	280
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	5 cut(s)	126, 163, 237, 343, 390
MboI	GATC	5 cut(s)	124, 161, 235, 341, 388
MboII	GAAGA	6 cut(s)	165, 199, 208, 211, 303, 306
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	2 cut(s)	20, 216
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	5 cut(s)	103, 129, 153, 279, 378
MluNI	TGGCCA	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	329
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	3 cut(s)	57, 358, 403
MspR9I	CCNGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	359
NciI	CCSGG	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	5 cut(s)	124, 161, 235, 341, 388
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	2 cut(s)	61, 237
PinAI	ACCGGT	1 cut(s)	402
PkrI	GCNGC	2 cut(s)	270, 364
PspEI	GGTNACC	1 cut(s)	398
PspFI	CCCAGC	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	61, 237
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	44
SatI	GCNGC	2 cut(s)	269, 363
Sau3AI	GATC	5 cut(s)	124, 161, 235, 341, 388
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	2 cut(s)	20, 216
SetI	ASST	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	5 cut(s)	103, 129, 153, 279, 378
SsiI	CCGC	6 cut(s)	42, 50, 82, 351, 362, 396
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	231
TasI	AATT	5 cut(s)	103, 129, 153, 279, 378
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	365
TscAI	CASTG	2 cut(s)	15, 292
TseI	GCWGC	1 cut(s)	268
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	2 cut(s)	15, 292
VneI	GTGCAC	1 cut(s)	212
XapI	RAATTY	2 cut(s)	153, 378
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.