Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004314

Physical Location & Seq

Genomic Coordinates Forward (+)

89626838 .. 89627970

Gene Structure 1133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTCTTCCATGTTGGGCTCACAAGGCGTGGTCTTGGCAACGGCCATGGCTGTCTCCGGCACTGTCCTCCTCCTCGCTTTTCGCCTTCAGAAACCGGCAGATCACCACCAAATTTCTCAGTCCACTCCCCAAAGTCTACGATCTTGTATCTCTTCTGAGAAGAAGAGGAAGAACAAGAAGAAGAGAGTTCACTTTGCAAAGGATGTGGTGGATCCAATTGGGGATGGAGAAGAGTTCAGAAGGCAGATCATTGCTTCTTCTTCTTCTTCTTCATCATCATCATCATCAGCATCACTAAACTTTAAAAAGACTAGTGGAGGTGCTCAGAAATATAAAGGAATGCCAGCAAACCGAGTGGCTCTCTATAATGGGATACTTAGGGATCGTGTGGTTCATCATCGATTGGCCTACTCGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPI_Ypi1

Protein Analysis

139

Amino Acids

15.13

Weight (kDa)

10.55

Isoelectric Point (pI)

65.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52565 AT3G15760
fragaria_vesca	FvH4_1g03160 FvH4_6g29910
malus_domestica	MD02G1030600.v1.1 MD15G1172200.v1.1 MD17G1209300.v1.1
prunus_persica	Prupe.3G084900_v2.0.a1 Prupe.7G243900_v2.0.a1
pyrus_communis	pycom02g02550 pycom09g14090 pycom17g21500
rosa_chinensis	RchiOBHm_Chr2g0088291 RchiOBHm_Chr2g0135861
rosa_laevigata	RLG00000015939 RLG00000019488
rosa_multiflora	Rmu_sc0004235.1_g000039 Rmu_sc0007848.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108800 Rroxscaffold_2G00152770
rosa_rugosa	Rorug01G0482600 Rorug02G0326700
rosa_samantha	Rh2AG037700 Rh2AG378200 Rh2BG036900 Rh2BG384600 Rh2CG038000 Rh2CG364000 Rh2DG037400 Rh2DG401100
rosa_wichuraiana	Rw2G002970 Rw2G030810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	136
AclWI	GGATC	3 cut(s)	206, 219, 390
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	71
AhlI	ACTAGT	1 cut(s)	311
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	3 cut(s)	206, 219, 390
AoxI	GGCC	2 cut(s)	42, 405
ApoI	RAATTY	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	95
BamHI	GGATCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	325
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	58
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	1 cut(s)	312
BfuI	GTATCC	1 cut(s)	366
BmiI	GGNNCC	1 cut(s)	213
BmsI	GCATC	1 cut(s)	299
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
Bsa29I	ATCGAT	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	249
BseCI	ATCGAT	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	208, 229
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	3 cut(s)	131, 147, 338
BseRI	GAGGAG	2 cut(s)	59, 62
BshFI	GGCC	2 cut(s)	44, 407
BshVI	ATCGAT	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	57, 95
BsmAI	GTCTC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	44, 407
Bsp1286I	GDGCHC	2 cut(s)	20, 325
Bsp143I	GATC	5 cut(s)	100, 140, 211, 246, 382
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	2 cut(s)	44, 407
BspCNI	CTCAG	3 cut(s)	130, 148, 337
BspDI	ATCGAT	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	3 cut(s)	206, 219, 390
BsrDI	GCAATG	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	5 cut(s)	100, 140, 211, 246, 382
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	4 cut(s)	157, 158, 176, 225
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	4 cut(s)	117, 156, 324, 377
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	208, 229
BstKTI	GATC	5 cut(s)	103, 143, 214, 249, 385
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	5 cut(s)	100, 140, 211, 246, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	44, 407
BsuTUI	ATCGAT	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	208, 229
BtsIMutI	CAGTG	2 cut(s)	60, 415
Cac8I	GCNNGC	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	94
ClaI	ATCGAT	1 cut(s)	400
CspCI	CAANNNNNGTGG	4 cut(s)	186, 221, 336, 371
CviAII	CATG	2 cut(s)	10, 46
CviJI	RGCY	5 cut(s)	18, 44, 50, 359, 407
CviKI_1	RGCY	5 cut(s)	18, 44, 50, 359, 407
DdeI	CTNAG	4 cut(s)	117, 156, 324, 377
DpnI	GATC	5 cut(s)	102, 142, 213, 248, 384
DpnII	GATC	5 cut(s)	100, 140, 211, 246, 382
DraI	TTTAAA	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	4 cut(s)	157, 158, 176, 225
EarI	CTCTTC	4 cut(s)	157, 158, 176, 225
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	13, 49
FaiI	YATR	4 cut(s)	11, 47, 333, 366
FatI	CATG	2 cut(s)	9, 45
FblI	GTMKAC	1 cut(s)	136
FokI	GGATG	2 cut(s)	215, 236
FriOI	GRGCYC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	44, 407
HapII	CCGG	2 cut(s)	57, 95
Hin1II	CATG	2 cut(s)	13, 49
HpaII	CCGG	2 cut(s)	57, 95
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	3 cut(s)	123, 137, 190
Hpy188I	TCNGA	4 cut(s)	90, 157, 239, 327
Hpy8I	GTNNAC	3 cut(s)	123, 137, 190
HpyAV	CCTTC	2 cut(s)	95, 234
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	4 cut(s)	117, 156, 324, 377
Hsp92II	CATG	2 cut(s)	13, 49
Kzo9I	GATC	5 cut(s)	100, 140, 211, 246, 382
LpnPI	CCDG	3 cut(s)	70, 108, 357
LweI	GCATC	1 cut(s)	299
MaeI	CTAG	1 cut(s)	312
MalI	GATC	5 cut(s)	102, 142, 213, 248, 384
MboI	GATC	5 cut(s)	100, 140, 211, 246, 382
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	20, 325
MluCI	AATT	2 cut(s)	111, 216
MnlI	CCTC	5 cut(s)	77, 80, 83, 159, 311
MseI	TTAA	1 cut(s)	303
MspI	CCGG	2 cut(s)	57, 95
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	5 cut(s)	100, 140, 211, 246, 382
NlaIII	CATG	2 cut(s)	13, 49
NlaIV	GGNNCC	1 cut(s)	213
PctI	GAATGC	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	303
Sau3AI	GATC	5 cut(s)	100, 140, 211, 246, 382
SduI	GDGCHC	2 cut(s)	20, 325
SetI	ASST	1 cut(s)	322
SfaNI	GCATC	1 cut(s)	299
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	2 cut(s)	111, 216
SspMI	CTAG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	400
TasI	AATT	2 cut(s)	111, 216
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	261, 383
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	136
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.