Rw2G030810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004314
Physical Location & Seq
Reverse (-)
50635589 .. 50636609
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G030810.1

Sequence Viewer

Length: 366 bp
ATGTCTCCTGTGCTAAGCTCTCAAGGTCTGGTCTTAGCAACCGCCATGGCTATCTCTAGCACCCTCGTCTTTCTTGCTTTCTCCAGAAAACAAACCCTCCCGCCAGAACCCCAAAACGCGACAAAGCAAAGTCCTACTCTGCGGTCTTGCTTGTCTTCAGGTGATAAGAAGAGGGATGGAAAGAAAAAGAAAGTGCGTTTTGCTGAGAATGTTGAGGAGCAAAAGATGGTGGAGAGAGTTATGGAGTCGTCGACGTCGTCTAAAAGAGTCGAAAAAAGTTGCAGAAACCAAATTCCTCAGAATCGAGTTGCCTTGTACAATGGAATTCGTAGAGACCGGGTGCAGAGGATGGCGTGTTCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.61

Weight (kDa)

10.33

Isoelectric Point (pI)

82.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 257
AccI GTMKAC 1 cut(s) 251
AccII CGCG 1 cut(s) 119
AciI CCGC 3 cut(s) 42, 101, 142
AcsI RAATTY 2 cut(s) 291, 324
AcuI CTGAAG 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 1 cut(s) 317
AloI GAACNNNNNNTCC 1 cut(s) 340
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 9, 327
ApoI RAATTY 2 cut(s) 291, 324
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 147
BccI CCATC 3 cut(s) 170, 220, 343
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 2 cut(s) 9, 327
BfaI CTAG 1 cut(s) 57
BlpI GCTNAGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 67
Bpu1102I GCTNAGC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 181, 354
BseMII CTCAG 2 cut(s) 195, 311
BseRI GAGGAG 1 cut(s) 230
BsgI GTGCAG 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 337
BsmAI GTCTC 2 cut(s) 9, 327
Bso31I GGTCTC 1 cut(s) 327
Bsp1407I TGTACA 1 cut(s) 315
Bsp1720I GCTNAGC 1 cut(s) 14
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 3 cut(s) 42, 101, 142
BspCNI CTCAG 2 cut(s) 196, 310
BspFNI CGCG 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 327
BsrGI TGTACA 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 45
BssNI GRCGYC 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 254
BstAUI TGTACA 1 cut(s) 315
BstDEI CTNAG 4 cut(s) 14, 34, 204, 297
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 181, 354
BstFNI CGCG 1 cut(s) 119
BstMAI GTCTC 2 cut(s) 9, 327
BstSCI CCNGG 1 cut(s) 336
BstUI CGCG 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 181, 354
Csp6I GTAC 1 cut(s) 316
CviAII CATG 1 cut(s) 46
CviJI RGCY 2 cut(s) 18, 50
CviKI_1 RGCY 2 cut(s) 18, 50
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 4 cut(s) 14, 34, 204, 297
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 47, 242, 361
FatI CATG 1 cut(s) 45
FauI CCCGC 1 cut(s) 108
FblI GTMKAC 1 cut(s) 251
FokI GGATG 2 cut(s) 188, 361
FspBI CTAG 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 67
HapII CCGG 1 cut(s) 337
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 1 cut(s) 49
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 3 cut(s) 245, 267, 301
HpaII CCGG 1 cut(s) 337
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 1 cut(s) 300
Hpy188III TCNNGA 1 cut(s) 84
Hpy8I GTNNAC 1 cut(s) 252
Hpy99I CGWCG 3 cut(s) 253, 256, 259
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 282, 343
HpyF3I CTNAG 4 cut(s) 14, 34, 204, 297
HpySE526I ACGT 1 cut(s) 254
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 1 cut(s) 49
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 6 cut(s) 14, 21, 97, 117, 144, 350
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 254
MboII GAAGA 2 cut(s) 147, 181
MluCI AATT 2 cut(s) 291, 324
MlyI GAGTC 2 cut(s) 254, 276
MnlI CCTC 6 cut(s) 74, 107, 165, 208, 306, 339
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 119
NciI CCSGG 1 cut(s) 338
NcoI CCATGG 1 cut(s) 45
NlaIII CATG 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 254
PfeI GAWTC 1 cut(s) 301
PflFI GACNNNGTC 1 cut(s) 256
PleI GAGTC 2 cut(s) 253, 275
PpsI GAGTC 2 cut(s) 253, 275
PsyI GACNNNGTC 1 cut(s) 256
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SalI GTCGAC 1 cut(s) 250
SchI GAGTC 2 cut(s) 254, 276
ScrFI CCNGG 1 cut(s) 338
SetI ASST 4 cut(s) 20, 28, 163, 257
SgrDI CGTCGACG 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 2 cut(s) 291, 324
SsiI CCGC 3 cut(s) 42, 101, 142
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 1 cut(s) 45
TaiI ACGT 1 cut(s) 257
TaqI TCGA 3 cut(s) 251, 270, 304
TasI AATT 2 cut(s) 291, 324
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 348
Tth111I GACNNNGTC 1 cut(s) 256
XapI RAATTY 2 cut(s) 291, 324
XmiI GTMKAC 1 cut(s) 251
XspI CTAG 1 cut(s) 57
ZraI GACGTC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.