Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004314

Physical Location & Seq

Genomic Coordinates Forward (+)

25412067 .. 25412920

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1209300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTCTTCTATGCTAGGCTCTCAAGGTTTGGTCCTGGCAACTGCCATGGCCGTCTCCAGCATGCTCGTCTTTCTTCATTTCTCCAGGCAAAAGAATTTCCCACCAACCCAACTTTCCCATCAGTCTCCGAACCAAATCCCTCTACGTTCTTGCTTGTATTCAGGTGATAGGAAGAGGGAGAGGAAGAAGAAGAAAGTACATTTTGCTGAAAATATTGAGGAGGAGGAGCGAGCTGGGGATGGAGAGGAGGAAGAAGAACCGATCAGTATAGAGAAGAGCAAAGTCGAAACAAGTTGCAGAAACGAAATTCGACGAAAAATTCCGGCGAATCGAATCGCTTTGTACAACGGAATTCTCAAGAACCGCATGCAGAGGATGGAGTGTTCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.95

Weight (kDa)

9.3

Isoelectric Point (pI)

77.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52565 AT3G15760
fragaria_vesca	FvH4_1g03160 FvH4_6g29910
malus_domestica	MD02G1030600.v1.1 MD15G1172200.v1.1 MD17G1209300.v1.1
prunus_persica	Prupe.3G084900_v2.0.a1 Prupe.7G243900_v2.0.a1
pyrus_communis	pycom02g02550 pycom09g14090 pycom17g21500
rosa_chinensis	RchiOBHm_Chr2g0088291 RchiOBHm_Chr2g0135861
rosa_laevigata	RLG00000015939 RLG00000019488
rosa_multiflora	Rmu_sc0004235.1_g000039 Rmu_sc0007848.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108800 Rroxscaffold_2G00152770
rosa_rugosa	Rorug01G0482600 Rorug02G0326700
rosa_samantha	Rh2AG037700 Rh2AG378200 Rh2BG036900 Rh2BG384600 Rh2CG038000 Rh2CG364000 Rh2DG037400 Rh2DG401100
rosa_wichuraiana	Rw2G002970 Rw2G030810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	4 cut(s)	94, 306, 318, 351
AfaI	GTAC	2 cut(s)	198, 344
AjnI	CCWGG	2 cut(s)	33, 83
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AloI	GAACNNNNNNTCC	1 cut(s)	367
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	2 cut(s)	58, 129
AoxI	GGCC	1 cut(s)	48
ApoI	RAATTY	4 cut(s)	94, 306, 318, 351
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	31
BccI	CCATC	3 cut(s)	126, 233, 370
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	2 cut(s)	35, 85
BcoDI	GTCTC	2 cut(s)	58, 129
BfaI	CTAG	1 cut(s)	14
Bme1390I	CCNGG	2 cut(s)	35, 85
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	35, 85
BpmI	CTGGAG	2 cut(s)	40, 67
BpuEI	CTTGAG	2 cut(s)	6, 341
BsaJI	CCNNGG	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	35, 85
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	244, 381
BseRI	GAGGAG	4 cut(s)	233, 236, 239, 260
BseYI	CCCAGC	1 cut(s)	233
BshFI	GGCC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	58, 129
BsmBI	CGTCTC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	1 cut(s)	50
BspQI	GCTCTTC	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	35, 85
Bst6I	CTCTTC	2 cut(s)	167, 269
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	3 cut(s)	62, 231, 368
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	244, 381
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	2 cut(s)	58, 129
BstMBI	GATC	1 cut(s)	261
BstNI	CCWGG	2 cut(s)	35, 85
BstNSI	RCATGY	2 cut(s)	64, 370
BstSCI	CCNGG	2 cut(s)	33, 83
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	244, 381
Cac8I	GCNNGC	3 cut(s)	62, 231, 368
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	197, 343
CviAII	CATG	3 cut(s)	46, 61, 367
CviJI	RGCY	3 cut(s)	18, 50, 233
CviKI_1	RGCY	3 cut(s)	18, 50, 233
CviQI	GTAC	2 cut(s)	197, 343
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	167, 269
EarI	CTCTTC	2 cut(s)	167, 269
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	33, 83
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	3 cut(s)	49, 64, 370
FaiI	YATR	5 cut(s)	11, 47, 62, 269, 368
FatI	CATG	3 cut(s)	45, 60, 366
FokI	GGATG	2 cut(s)	251, 388
FspBI	CTAG	1 cut(s)	14
GsaI	CCCAGC	1 cut(s)	237
GsuI	CTGGAG	2 cut(s)	40, 67
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	323
Hin1II	CATG	3 cut(s)	49, 64, 370
HinfI	GANTC	2 cut(s)	328, 333
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	1 cut(s)	358
Hpy99I	CGWCG	1 cut(s)	315
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	297, 370
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	49, 64, 370
Kzo9I	GATC	1 cut(s)	261
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	8 cut(s)	20, 47, 70, 70, 97, 147, 219, 336
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	145
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	8 cut(s)	65, 184, 196, 199, 202, 263, 266, 286
MluCI	AATT	4 cut(s)	94, 306, 318, 351
MnlI	CCTC	9 cut(s)	150, 168, 174, 211, 214, 217, 238, 241, 366
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	35, 85
MvaI	CCWGG	2 cut(s)	35, 85
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	3 cut(s)	49, 64, 370
NspI	RCATGY	2 cut(s)	64, 370
PaeI	GCATGC	2 cut(s)	64, 370
PciSI	GCTCTTC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	328, 333
Psp6I	CCWGG	2 cut(s)	33, 83
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	2 cut(s)	33, 83
PspPI	GGNCC	1 cut(s)	31
RsaI	GTAC	2 cut(s)	198, 344
RsaNI	GTAC	2 cut(s)	197, 343
SapI	GCTCTTC	1 cut(s)	269
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	35, 85
SetI	ASST	4 cut(s)	28, 148, 166, 235
SinI	GGWCC	1 cut(s)	31
SmlI	CTYRAG	2 cut(s)	21, 356
SmoI	CTYRAG	2 cut(s)	21, 356
SphI	GCATGC	2 cut(s)	64, 370
Sse9I	AATT	4 cut(s)	94, 306, 318, 351
SsiI	CCGC	1 cut(s)	364
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	33, 83
StyI	CCWWGG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	285, 310, 331
TasI	AATT	4 cut(s)	94, 306, 318, 351
TatI	WGTACW	2 cut(s)	196, 342
TfiI	GAWTC	2 cut(s)	328, 333
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	4 cut(s)	94, 306, 318, 351
XceI	RCATGY	2 cut(s)	64, 370
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.