Rh2CG364000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004314
Physical Location & Seq
Reverse (-)
49342359 .. 49342829
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG364000.1

Sequence Viewer

Length: 363 bp
ATGTCTCCTGTGCTAAGCTCTCAAGGTCTGGTCTTAGCAACCGCCATGGCTATCTCTAGCACCCTCGTCTTTCTTGCTTTCTCCAGAAAACAAACCCTCCCAGAACCCCAAAACGCAACAAAGCAAAGTCCTACTCTGCGGTCTTGCTTGTCTTCAGGTGATAAGAAGAGGGATGGAAAGAAAAAGAAAGTGCGTTTTGCTGAGAATGTTGAGGAGGAAAAGATGGTAGAGAGAGTTATGGAGTCGTCGACGTCGTCTAAAAGAGTCGAAAAAAGTTGCAGAAACCAAATTCCTCAGAATCGAGTTGCCTTGTACAATGGAATTCGTAGAGACCGGGTGCAGAGGATGGCGTGTTCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.51

Weight (kDa)

10.2

Isoelectric Point (pI)

82.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 254
AccI GTMKAC 1 cut(s) 248
AciI CCGC 2 cut(s) 42, 139
AcsI RAATTY 2 cut(s) 288, 321
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 251
AfaI GTAC 1 cut(s) 314
AloI GAACNNNNNNTCC 1 cut(s) 337
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 9, 324
ApoI RAATTY 2 cut(s) 288, 321
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 144
BccI CCATC 3 cut(s) 167, 217, 340
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 2 cut(s) 9, 324
BfaI CTAG 1 cut(s) 57
BlpI GCTNAGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 67
Bpu1102I GCTNAGC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 178, 351
BseMII CTCAG 2 cut(s) 192, 308
BseRI GAGGAG 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 359
BsiSI CCGG 1 cut(s) 334
BsmAI GTCTC 2 cut(s) 9, 324
Bso31I GGTCTC 1 cut(s) 324
Bsp1407I TGTACA 1 cut(s) 312
Bsp1720I GCTNAGC 1 cut(s) 14
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 42, 139
BspCNI CTCAG 2 cut(s) 193, 307
BspTNI GGTCTC 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 45
BssNI GRCGYC 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 1 cut(s) 251
BstAUI TGTACA 1 cut(s) 312
BstDEI CTNAG 4 cut(s) 14, 34, 201, 294
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 178, 351
BstMAI GTCTC 2 cut(s) 9, 324
BstSCI CCNGG 1 cut(s) 333
BstV2I GAAGAC 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 178, 351
Csp6I GTAC 1 cut(s) 313
CviAII CATG 1 cut(s) 46
CviJI RGCY 2 cut(s) 18, 50
CviKI_1 RGCY 2 cut(s) 18, 50
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 4 cut(s) 14, 34, 201, 294
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 321
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 47, 239, 358
FatI CATG 1 cut(s) 45
FblI GTMKAC 1 cut(s) 248
FokI GGATG 2 cut(s) 185, 358
FspBI CTAG 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 67
HapII CCGG 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 1 cut(s) 49
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HinfI GANTC 3 cut(s) 242, 264, 298
HpaII CCGG 1 cut(s) 334
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 1 cut(s) 84
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 3 cut(s) 250, 253, 256
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 279, 340
HpyF3I CTNAG 4 cut(s) 14, 34, 201, 294
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 1 cut(s) 49
LpnPI CCDG 6 cut(s) 14, 21, 97, 114, 141, 347
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 251
MboII GAAGA 2 cut(s) 144, 178
MluCI AATT 2 cut(s) 288, 321
MlyI GAGTC 2 cut(s) 251, 273
MnlI CCTC 7 cut(s) 74, 107, 162, 205, 208, 303, 336
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 335
NciI CCSGG 1 cut(s) 335
NcoI CCATGG 1 cut(s) 45
NlaIII CATG 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PfeI GAWTC 1 cut(s) 298
PflFI GACNNNGTC 1 cut(s) 253
PleI GAGTC 2 cut(s) 250, 272
PpsI GAGTC 2 cut(s) 250, 272
PsyI GACNNNGTC 1 cut(s) 253
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SalI GTCGAC 1 cut(s) 247
SchI GAGTC 2 cut(s) 251, 273
ScrFI CCNGG 1 cut(s) 335
SetI ASST 4 cut(s) 20, 28, 160, 254
SgrDI CGTCGACG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 2 cut(s) 288, 321
SsiI CCGC 2 cut(s) 42, 139
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 45
TaiI ACGT 1 cut(s) 254
TaqI TCGA 3 cut(s) 248, 267, 301
TasI AATT 2 cut(s) 288, 321
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 1 cut(s) 298
TspDTI ATGAA 1 cut(s) 345
Tth111I GACNNNGTC 1 cut(s) 253
XapI RAATTY 2 cut(s) 288, 321
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 1 cut(s) 57
ZraI GACGTC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.