Rorug01G0482600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004314
Physical Location & Seq
Forward (+)
57008017 .. 57016518
8502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0482600.1

Sequence Viewer

Length: 3411 bp
ATGTCTTCCTTGAGTAGGGAACTGGTGTTCTTGATTTTACAGTTCTTGGACGAGGAGAAGTTCAAGGAAACAGTTCATAAGCTAGAGCAAGAGTCTGGCTTTTTCTTCAATATGAAGCATTTTGAGGATCAAGTCCAGGCTGGAGAGTGGGACGAAGTCGAGCGATATTTGGGTGGCTTCACTAAAGTTGAAGACAATCGGTATTCAATGAAGATCTTCTTTGAAATCAGGAAGCAGAAATATTTGGAAGCTCTCGATAGGCAGGATAGGGCGAAGGCTGTTGAGATTCTTGTGAAGGACCTTAAGGTTTTTGCATCTTTTAATGAGGAACTTTTCAAGGAGATCACTCAGTTGCTCACTCTTGACAACTTCAGGCAAAATGAGCAGCTTTCCAAGTACGGGGACACAAAATCTGCTCGGAATATCATGCTTATAGAACTTAAAAAGCTCATTGAAGCGAACCCATTATTTCGTGATAAACTTGCATTTCCGTCCTTCAAAAGTTCACGGTTAAGGACTTTGATAAACCAGAGTCTCAACTGGCAGCACCAACTTTGCAAGAATCCCCGTCCAAATCCTGATATTAAAACACTATTTATGGATCATTCTTGCACTCCGAATGCTAATGGATCTCGTCCTCCTCCCACAAACAATCCCCTTGTTGGACCAATTCCAAAGGCTGGTGCATTTCCTCCTATTGGAGCCCATGGTCCATTTCAGCCTGTTGTCTCCCCTTCTCCTGGTGCTATTGCTGGGTGGATGTCAAATGCTAATCCTTCTATGCCTCACCCTGCTGTTGCAGCAGCTCCTCCTGGTCTTGTGCAGCCTTCTAGTGCAGCTGCTTTCTTAAAGCACCCAAGGACGCCGACAGGTGTTACAGGGATGGATTATCAATCAGCTGATTCAGAGCACTTGATTAAGCGTATTCGTACTGGCCCATCTGATGAGGTGTCCTTTTCTGGGGTGATGCTTAGTTCCAATGCTTATTCACAAGATGACCTTCCGAAGGCTGTTGTTCGGACCCTTAGTCAAGGATCTAATGTAATGAGCATGGACTTTCATCCACAGCAACAAAATATTCTTCTAGTTGGGACAAATGTTGGCGACATCAGTCTTTGGGAATTAGGATCCCGGGAAAGGTTGGTACATAAACCTTTCAAGGTCTGGGATATACAAGCTGCGTCAATGCCACTGCAGACTGCTTTGTTGAATGATGCTGCAATATCAGTGAATCGTTGTGTTTGGAGCCCAGATGGACTTATGCTTGGTGTTGCATTTTCTAAGCACATCGTCCAGATATATACTAACAATCCAACTGGAGAATTGAGACAACATTTGGAGATTGATGCTCACGTTGGCGGTGTTAATGACATTGCATTTGCTCATCCCAACAAGCAATTGTGTATTGTTACTTGCGGAGATGATAAAGTGATTAAGGTATGGGATGCTGCAGCCGGACGCAGACAATATACATTTGAAGGCCATGAAGCTCCTGTATATTCAGTGTGCCCTCATTACAAAGAAAATATACAATTCATTTTTTCAACTGCGATTGATGGGAAGATTAAAGCTTGGCTATACGATTGTTTGGGGTCAAGGGTGGACTATGATGCTCCTGGACTTTGGTGCACCATGATGGCTTATAGTGCAGATGGAACCAGACTCTTCTCATGTGGAACGAGTAAAGAAGGTGAATCTCATCTGGTGGAGTGGAATGAGAGCGAAGGGGCCATCAAACGGACATATTCTGGGTTTAGAAAACGCTCTTTGGATGTTGTCCAGTTTGACACAACAAGGAACCGGTTCCTAGCCGCTGGTGATGAATTTCAAATAAAGTTCTGGGATATGGACAATACCAATGTGCTGACAGCTGTTGATGCAGATGGCGGGTTGCCTGCTAGTCCTAGACTCAGATTCAACAAAGAAGGTTCCTTGTTAGCTGTAACAACGACTGACAGCGGTATAAAGATTTTAGCAAATAATGATGGTTTGCGCTTGATAAGGATGTTGGAGAGCAAAGCTATGGAGAGAAACCGAGGCACTTCTGAGCCCATCAACACTAAGCCTTTGATTGTCAATGCACTAGGCCCCATTGGGAATGTTTCTAACGCTGTTGCTCCAACCCTCGAACGTGCTGATAGAATCCAACCTGCTGTTTCTATCAGTAGTCTGGGTAATATGGAGAACAGCAGGCTTGTTGATGTTAAACCTCGGATCCCTGATGATATAGACAAGATTAAGAGCTGGAAAATTTCTGATATTGCGGATCCTTCTCAAATGAAAGCTTTAAGATTGCCCGACTCTACAACAGCTGGAAAGGTTGTGAGACTAATGTACACGAATAATGGTTTGGCTCTGTTAGCCCTCGCCTCCAATGCTGTTCACAAGCTTTGGAAGTGGCCGCGTAATGACAGGAATAATCCATCAGGGAAGGCTAGTGCATATGTTGTTCCACAGTTGTGGCAGCCCCCGAATGGAATTCTTATGGCTAATGATGTAAATGACAATAAACCAGCTGAGGAATCTACTGCATGCATTGCTTTATCTAAAAATGATTCTTACGTAATGTCTGCATCTGGCGGGAAGGTCTCTTTGTTCAACATGATGACATTTAAGGTCATGACAACATTTGTATCTCCCCCTCCTGCTGCCACTTTTCTGGCATTCCATCCTCAAGATAATAATATAATTGCTATTGGCATGGAGGACTCTACTATTTTAATATATAATGTCAGGGTTGATGAGGTCAAAACCAAACTTAAGGGTCACCAGAATCGGATAACGGGCCTTGCATTTTCCCAGACTCTTAACATACTGGTCTCTTCAGGAGCTGATGCCCAGTTATGTGTGTGGAGCATTGATGGGTGGGAGAAAAAGAAAACAAGGTTCATACAAGCACCAACTGGTCGGCAATCCCCATTGGTTGGAGAAACAAAAGTTCAGTTTCATAACGATCACACACATCTATTGGTTGCCCATGAAAGCCAAATTGCTGTGTATGACAGCAAGCTTGATTGTTTACGCTTTTGGTCTCCAAAAGATGCCCTTGCTGCTCCCATCTCATGTGCAATATATTCATGCGATAGTTTGTTGGTTTATGCTACTTTTTGTGACGGTGCTGTGGGAGTTTTTGATGCTGATAGCTTAAGACTCAGATGTCGAATAGCGCCTTCTGCTTATATACCATCATTTTCTCTCAGCGGTGGCAACCCCTCCTATCCTGTGGTTGTAGCAGCTCATCCATCTGAGCCTAACCAGATCGCAGTTGGCATGACTGACGGGTCAGTGCATGTGGTTGAACCATCTGATGCAGAGCTGAAGTGGGGTGGCACACCCTCTCAAGATAATGGTCCTTCCAATTCATCAAATCCTTCTCCTAGTGGTCAAGCATCAGAACTACCTTCCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPI_Ypi1

Protein Analysis

1136

Amino Acids

125.19

Weight (kDa)

6.72

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH_TPL PF17814 5 - 34 6.8e-13 LisH-like dimerisation domain
TPR1-like_2nd PF21889 37 - 161 1.9e-61 TPR1-like, CTLH-containing domain
zf_topless PF21359 164 - 204 1.5e-25 TOPLESS, zinc finger domain
WD40_CDC20-Fz PF24807 330 - 614 4.5e-09 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 346 - 562 6.4e-09 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 387 - 560 5.1e-13 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 409 - 621 1.2e-19 WDR5 beta-propeller domain
WD40_Gbeta PF25391 410 - 616 3.7e-06 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 410 - 669 4.8e-21 THOC3 beta-propeller domain
WD40_Prp19 PF24814 451 - 525 3.4e-07 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 456 - 526 3.7e-08 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 835 - 958 2.1e-13 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 838 - 1048 3.7e-18 WDHD1 first WD40 domain
WDR55 PF24796 838 - 954 1.4e-06 WDR55
Beta-prop_WDR3_1st PF25173 838 - 957 1.1e-16 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 839 - 959 8.1e-11 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 840 - 1047 1.5e-15 WDR5 beta-propeller domain
WD40_Prp19 PF24814 841 - 1003 2.4e-13 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 844 - 954 5e-10 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd PF25172 845 - 992 1.4e-12 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 856 - 955 6.4e-11 WDR36/Utp21 first beta-propeller
Beta-prop_IFT140_1st PF23383 856 - 956 2e-11 IFT140 first beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 861 - 965 8.1e-09 WDR90/POC16, second beta-propeller
Beta-prop_RIG_1st PF23770 870 - 936 2.5e-07 RIG first beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 3156, 3280
Acc36I ACCTGC 1 cut(s) 2158
AccB7I CCANNNNNTGG 2 cut(s) 680, 2924
AccII CGCG 1 cut(s) 2404
AciI CCGC 9 cut(s) 1359, 1416, 1812, 1887, 1959, 2264, 2402, 2580, 3201
AcoI YGGCCR 1 cut(s) 2399
AcsI RAATTY 3 cut(s) 1823, 2250, 2478
AcuI CTGAAG 3 cut(s) 355, 2808, 3338
AcyI GRCGYC 1 cut(s) 863
AfaI GTAC 4 cut(s) 398, 931, 1146, 2336
AflII CTTAAG 3 cut(s) 302, 2759, 3145
AgeI ACCGGT 1 cut(s) 1800
AhdI GACNNNNNGTC 1 cut(s) 1026
AjnI CCWGG 5 cut(s) 135, 739, 811, 1615, 3404
AjuI GAANNNNNNNTTGG 2 cut(s) 2333, 2365
AleI CACNNNNGTG 1 cut(s) 2458
AloI GAACNNNNNNTCC 2 cut(s) 11, 43
Alw21I GWGCWC 2 cut(s) 912, 1631
Alw26I GTCTC 7 cut(s) 539, 733, 1321, 2320, 2593, 2824, 3036
Alw44I GTGCAC 1 cut(s) 1627
AlwNI CAGNNNCTG 1 cut(s) 2831
Ama87I CYCGRG 1 cut(s) 1131
AoxI GGCC 6 cut(s) 934, 1480, 1728, 2086, 2399, 2785
ApaLI GTGCAC 1 cut(s) 1627
ApoI RAATTY 3 cut(s) 1823, 2250, 2478
ArsI GACNNNNNNTTYG 2 cut(s) 1361, 1393
AsiGI ACCGGT 1 cut(s) 1800
Asp700I GAANNNNTTC 3 cut(s) 72, 215, 1802
AspLEI GCGC 2 cut(s) 1995, 3169
AspS9I GGNCC 9 cut(s) 298, 665, 710, 935, 1020, 1728, 2087, 2785, 3350
AsuC2I CCSGG 2 cut(s) 1132, 1133
AsuHPI GGTGA 5 cut(s) 779, 976, 1703, 1829, 2759
AvaI CYCGRG 1 cut(s) 1131
AvaII GGWCC 5 cut(s) 298, 665, 710, 1020, 3350
BaeGI GKGCMC 2 cut(s) 1511, 1631
BaeI ACNNNNGTAYC 2 cut(s) 2616, 2649
BamHI GGATCC 3 cut(s) 1127, 2214, 2266
BanII GRGCYC 3 cut(s) 706, 1250, 2052
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 2 cut(s) 912, 1631
BbvCI CCTCAGC 1 cut(s) 2517
BciT130I CCWGG 5 cut(s) 137, 741, 813, 1617, 3406
BcnI CCSGG 2 cut(s) 1132, 1133
BcoDI GTCTC 7 cut(s) 539, 733, 1321, 2320, 2593, 2824, 3036
BfaI CTAG 9 cut(s) 83, 831, 1085, 1808, 1899, 1905, 2084, 2436, 3378
BfmI CTRYAG 2 cut(s) 1193, 1449
BfoI RGCGCY 1 cut(s) 3170
BfrI CTTAAG 3 cut(s) 302, 2759, 3145
BfuAI ACCTGC 1 cut(s) 2158
BglII AGATCT 1 cut(s) 213
Bme1390I CCNGG 7 cut(s) 137, 741, 813, 1132, 1133, 1617, 3406
Bme18I GGWCC 5 cut(s) 298, 665, 710, 1020, 3350
BmeRI GACNNNNNGTC 1 cut(s) 1026
BmeT110I CYCGRG 1 cut(s) 1131
BmgT120I GGNCC 9 cut(s) 298, 665, 710, 935, 1020, 1728, 2087, 2785, 3350
BmrFI CCNGG 7 cut(s) 137, 741, 813, 1132, 1133, 1617, 3406
BmrI ACTGGG 1 cut(s) 2833
BmuI ACTGGG 1 cut(s) 2833
BoxI GACNNNNGTC 1 cut(s) 1110
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 2 cut(s) 162, 1338
Bpu10I CCTNAGC 1 cut(s) 2517
BpuEI CTTGAG 3 cut(s) 31, 2658, 3324
BpuMI CCSGG 2 cut(s) 1132, 1133
BsaAI YACGTR 1 cut(s) 2563
BsaHI GRCGYC 1 cut(s) 863
BsaI GGTCTC 3 cut(s) 2593, 2824, 3036
BsaJI CCNNGG 5 cut(s) 706, 857, 1131, 2035, 2210
BsaWI WCCGGW 1 cut(s) 1800
Bse118I RCCGGY 1 cut(s) 1800
Bse1I ACTGG 8 cut(s) 27, 545, 937, 1321, 1780, 2820, 2839, 2908
Bse3DI GCAATG 2 cut(s) 1371, 2535
BseBI CCWGG 5 cut(s) 137, 741, 813, 1617, 3406
BseDI CCNNGG 5 cut(s) 706, 857, 1131, 2035, 2210
BseGI GGATG 9 cut(s) 765, 888, 1060, 1384, 1450, 1777, 2010, 2668, 3238
BseMI GCAATG 2 cut(s) 1371, 2535
BseMII CTCAG 7 cut(s) 362, 1924, 2037, 2508, 3166, 3211, 3237
BseNI ACTGG 8 cut(s) 27, 545, 937, 1321, 1780, 2820, 2839, 2908
BseRI GAGGAG 3 cut(s) 68, 630, 798
BseSI GKGCMC 2 cut(s) 1511, 1631
BseYI CCCAGC 1 cut(s) 752
BsgI GTGCAG 3 cut(s) 842, 855, 1668
Bsh1236I CGCG 1 cut(s) 2404
BshFI GGCC 6 cut(s) 936, 1482, 1730, 2088, 2401, 2787
BshTI ACCGGT 1 cut(s) 1800
BsiHKAI GWGCWC 2 cut(s) 912, 1631
BsiHKCI CYCGRG 1 cut(s) 1131
BsiSI CCGG 3 cut(s) 1132, 1455, 1801
BslFI GGGAC 3 cut(s) 164, 416, 1105
BsmAI GTCTC 7 cut(s) 539, 733, 1321, 2320, 2593, 2824, 3036
BsmFI GGGAC 3 cut(s) 164, 416, 1105
BsmI GAATGC 2 cut(s) 625, 2663
BsnI GGCC 6 cut(s) 936, 1482, 1730, 2088, 2401, 2787
Bso31I GGTCTC 3 cut(s) 2593, 2824, 3036
BsoBI CYCGRG 1 cut(s) 1131
Bsp1286I GDGCHC 6 cut(s) 706, 912, 1250, 1511, 1631, 2052
Bsp1407I TGTACA 1 cut(s) 2334
Bsp19I CCATGG 1 cut(s) 706
BspACI CCGC 9 cut(s) 1359, 1416, 1812, 1887, 1959, 2264, 2402, 2580, 3201
BspANI GGCC 6 cut(s) 936, 1482, 1730, 2088, 2401, 2787
BspCNI CTCAG 7 cut(s) 361, 1923, 2038, 2509, 3165, 3210, 3238
BspFNI CGCG 1 cut(s) 2404
BspHI TCATGA 1 cut(s) 2619
BspMAI CTGCAG 2 cut(s) 1197, 1453
BspMI ACCTGC 1 cut(s) 2158
BspTI CTTAAG 3 cut(s) 302, 2759, 3145
BspTNI GGTCTC 3 cut(s) 2593, 2824, 3036
BsrDI GCAATG 2 cut(s) 1371, 2535
BsrFI RCCGGY 1 cut(s) 1800
BsrGI TGTACA 1 cut(s) 2334
BsrI ACTGG 8 cut(s) 27, 545, 937, 1321, 1780, 2820, 2839, 2908
BssAI RCCGGY 1 cut(s) 1800
BssECI CCNNGG 5 cut(s) 706, 857, 1131, 2035, 2210
BssNI GRCGYC 1 cut(s) 863
BssT1I CCWWGG 2 cut(s) 706, 857
Bst2UI CCWGG 5 cut(s) 137, 741, 813, 1617, 3406
Bst4CI ACNGT 5 cut(s) 42, 73, 510, 2457, 3116
Bst6I CTCTTC 2 cut(s) 1670, 2827
BstACI GRCGYC 1 cut(s) 863
BstAFI CTTAAG 3 cut(s) 302, 2759, 3145
BstAPI GCANNNNNTGC 1 cut(s) 2537
BstAUI TGTACA 1 cut(s) 2334
BstBAI YACGTR 1 cut(s) 2563
BstC8I GCNNGC 4 cut(s) 1896, 2192, 2533, 3008
BstDSI CCRYGG 1 cut(s) 706
BstEII GGTNACC 1 cut(s) 2765
BstENI CCTNNNNNAGG 2 cut(s) 13, 1004
BstF5I GGATG 9 cut(s) 765, 888, 1060, 1384, 1450, 1777, 2010, 2668, 3238
BstFNI CGCG 1 cut(s) 2404
BstH2I RGCGCY 1 cut(s) 3170
BstHHI GCGC 2 cut(s) 1995, 3169
BstMAI GTCTC 7 cut(s) 539, 733, 1321, 2320, 2593, 2824, 3036
BstMWI GCNNNNNNNGC 9 cut(s) 382, 800, 1646, 1877, 2360, 2375, 2537, 3050, 3173
BstNI CCWGG 5 cut(s) 137, 741, 813, 1617, 3406
BstNSI RCATGY 2 cut(s) 2535, 3293
BstPAI GACNNNNGTC 1 cut(s) 1110
BstPI GGTNACC 1 cut(s) 2765
BstSCI CCNGG 7 cut(s) 135, 739, 811, 1130, 1131, 1615, 3404
BstSFI CTRYAG 2 cut(s) 1193, 1449
BstSLI GKGCMC 2 cut(s) 1511, 1631
BstSNI TACGTA 1 cut(s) 2563
BstUI CGCG 1 cut(s) 2404
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 6 cut(s) 213, 629, 1034, 1127, 2214, 2266
BstXI CCANNNNNNTGG 2 cut(s) 2460, 2659
BstYI RGATCY 6 cut(s) 213, 629, 1034, 1127, 2214, 2266
BsuRI GGCC 6 cut(s) 936, 1482, 1730, 2088, 2401, 2787
BtgI CCRYGG 1 cut(s) 706
BtsCI GGATG 9 cut(s) 765, 888, 1060, 1384, 1450, 1777, 2010, 2668, 3238
BtsI GCAGTG 1 cut(s) 1190
BtsIMutI CAGTG 4 cut(s) 1190, 1233, 1509, 3291
BveI ACCTGC 1 cut(s) 2158
Cac8I GCNNGC 4 cut(s) 1896, 2192, 2533, 3008
CaiI CAGNNNCTG 1 cut(s) 2831
CciI TCATGA 1 cut(s) 2619
CfoI GCGC 2 cut(s) 1995, 3169
Cfr10I RCCGGY 1 cut(s) 1800
Cfr13I GGNCC 9 cut(s) 298, 665, 710, 935, 1020, 1728, 2087, 2785, 3350
Cfr9I CCCGGG 1 cut(s) 1131
CseI GACGC 3 cut(s) 871, 1170, 1467
Csp6I GTAC 4 cut(s) 397, 930, 1145, 2335
CspAI ACCGGT 1 cut(s) 1800
CviQI GTAC 4 cut(s) 397, 930, 1145, 2335
DrdI GACNNNNNNGTC 2 cut(s) 3156, 3280
DriI GACNNNNNGTC 1 cut(s) 1026
DseDI GACNNNNNNGTC 2 cut(s) 3156, 3280
EaeI YGGCCR 1 cut(s) 2399
Eam1104I CTCTTC 2 cut(s) 1670, 2827
Eam1105I GACNNNNNGTC 1 cut(s) 1026
EarI CTCTTC 2 cut(s) 1670, 2827
Eco105I TACGTA 1 cut(s) 2563
Eco130I CCWWGG 2 cut(s) 706, 857
Eco24I GRGCYC 3 cut(s) 706, 1250, 2052
Eco31I GGTCTC 3 cut(s) 2593, 2824, 3036
Eco47I GGWCC 5 cut(s) 298, 665, 710, 1020, 3350
Eco57I CTGAAG 3 cut(s) 355, 2808, 3338
Eco88I CYCGRG 1 cut(s) 1131
Eco91I GGTNACC 1 cut(s) 2765
EcoNI CCTNNNNNAGG 2 cut(s) 13, 1004
EcoO109I RGGNCCY 2 cut(s) 298, 2087
EcoO65I GGTNACC 1 cut(s) 2765
EcoRI GAATTC 1 cut(s) 2478
EcoRII CCWGG 5 cut(s) 135, 739, 811, 1615, 3404
EcoT14I CCWWGG 2 cut(s) 706, 857
EcoT22I ATGCAT 1 cut(s) 2537
EcoT38I GRGCYC 3 cut(s) 706, 1250, 2052
ErhI CCWWGG 2 cut(s) 706, 857
FalI AAGNNNNNCTT 6 cut(s) 203, 235, 984, 1016, 3030, 3062
FaqI GGGAC 3 cut(s) 164, 416, 1105
FauI CCCGC 2 cut(s) 1880, 2573
FauNDI CATATG 1 cut(s) 2443
FokI GGATG 9 cut(s) 772, 895, 1047, 1371, 1457, 1784, 2017, 2655, 3225
FriOI GRGCYC 3 cut(s) 706, 1250, 2052
FspBI CTAG 9 cut(s) 83, 831, 1085, 1808, 1899, 1905, 2084, 2436, 3378
GlaI GCGC 2 cut(s) 1994, 3168
GsaI CCCAGC 1 cut(s) 756
GsuI CTGGAG 2 cut(s) 162, 1338
HaeII RGCGCY 1 cut(s) 3170
HaeIII GGCC 6 cut(s) 936, 1482, 1730, 2088, 2401, 2787
HapII CCGG 3 cut(s) 1132, 1455, 1801
HgaI GACGC 3 cut(s) 871, 1170, 1467
HhaI GCGC 2 cut(s) 1995, 3169
Hin1I GRCGYC 1 cut(s) 863
Hin6I GCGC 2 cut(s) 1993, 3167
HinP1I GCGC 2 cut(s) 1993, 3167
HindIII AAGCTT 4 cut(s) 1569, 2283, 2387, 3008
HpaII CCGG 3 cut(s) 1132, 1455, 1801
HphI GGTGA 5 cut(s) 779, 976, 1703, 1829, 2759
Hpy166II GTNNAC 6 cut(s) 506, 1603, 1629, 2337, 2383, 3020
Hpy8I GTNNAC 6 cut(s) 506, 1603, 1629, 2337, 2383, 3020
HpyCH4III ACNGT 5 cut(s) 42, 73, 510, 2457, 3116
HpyCH4IV ACGT 3 cut(s) 1353, 2131, 2562
HpyF10VI GCNNNNNNNGC 9 cut(s) 382, 800, 1646, 1877, 2360, 2375, 2537, 3050, 3173
HpySE526I ACGT 3 cut(s) 1353, 2131, 2562
Hsp92I GRCGYC 1 cut(s) 863
HspAI GCGC 2 cut(s) 1993, 3167
LmnI GCTCC 9 cut(s) 701, 811, 1245, 1495, 1618, 2122, 2828, 2853, 3058
MaeI CTAG 9 cut(s) 83, 831, 1085, 1808, 1899, 1905, 2084, 2436, 3378
MaeII ACGT 3 cut(s) 1353, 2131, 2562
MaeIII GTNAC 5 cut(s) 874, 1408, 1942, 2765, 3110
MboII GAAGA 8 cut(s) 97, 203, 208, 223, 1073, 1573, 1657, 2814
MfeI CAATTG 1 cut(s) 1397
MflI RGATCY 6 cut(s) 213, 629, 1034, 1127, 2214, 2266
MhlI GDGCHC 6 cut(s) 706, 912, 1250, 1511, 1631, 2052
MlyI GAGTC 8 cut(s) 101, 541, 1656, 1902, 2294, 2702, 2797, 3144
MmeI TCCRAC 6 cut(s) 643, 1337, 1989, 2144, 2170, 2905
Mph1103I ATGCAT 1 cut(s) 2537
MroXI GAANNNNTTC 3 cut(s) 72, 215, 1802
MslI CAYNNNNRTG 2 cut(s) 1634, 2458
MspA1I CMGCKG 8 cut(s) 839, 899, 1814, 1871, 1959, 2312, 2516, 3201
MspCI CTTAAG 3 cut(s) 302, 2759, 3145
MspI CCGG 3 cut(s) 1132, 1455, 1801
MspR9I CCNGG 7 cut(s) 137, 741, 813, 1132, 1133, 1617, 3406
MunI CAATTG 1 cut(s) 1397
Mva1269I GAATGC 2 cut(s) 625, 2663
MvaI CCWGG 5 cut(s) 137, 741, 813, 1617, 3406
MvnI CGCG 1 cut(s) 2404
MwoI GCNNNNNNNGC 9 cut(s) 382, 800, 1646, 1877, 2360, 2375, 2537, 3050, 3173
NciI CCSGG 2 cut(s) 1132, 1133
NcoI CCATGG 1 cut(s) 706
NdeI CATATG 1 cut(s) 2443
NmuCI GTSAC 2 cut(s) 2765, 3110
NsiI ATGCAT 1 cut(s) 2537
NspI RCATGY 2 cut(s) 2535, 3293
OliI CACNNNNGTG 1 cut(s) 2458
PaeI GCATGC 1 cut(s) 2535
PagI TCATGA 1 cut(s) 2619
PctI GAATGC 2 cut(s) 625, 2663
PdmI GAANNNNTTC 3 cut(s) 72, 215, 1802
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 2 cut(s) 680, 2924
PfoI TCCNGGA 1 cut(s) 1615
PinAI ACCGGT 1 cut(s) 1800
PleI GAGTC 8 cut(s) 100, 540, 1656, 1902, 2294, 2702, 2797, 3144
PpsI GAGTC 8 cut(s) 100, 540, 1656, 1902, 2294, 2702, 2797, 3144
Ppu21I YACGTR 1 cut(s) 2563
PpuMI RGGWCCY 1 cut(s) 298
PshAI GACNNNNGTC 1 cut(s) 1110
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 5 cut(s) 135, 739, 811, 1615, 3404
PspEI GGTNACC 1 cut(s) 2765
PspFI CCCAGC 1 cut(s) 752
PspGI CCWGG 5 cut(s) 135, 739, 811, 1615, 3404
PspPI GGNCC 9 cut(s) 298, 665, 710, 935, 1020, 1728, 2087, 2785, 3350
PspPPI RGGWCCY 1 cut(s) 298
PstI CTGCAG 2 cut(s) 1197, 1453
PstNI CAGNNNCTG 1 cut(s) 2831
PsuI RGATCY 6 cut(s) 213, 629, 1034, 1127, 2214, 2266
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 5 cut(s) 839, 899, 1871, 2312, 2516
RsaI GTAC 4 cut(s) 398, 931, 1146, 2336
RsaNI GTAC 4 cut(s) 397, 930, 1145, 2335
RseI CAYNNNNRTG 2 cut(s) 1634, 2458
Sau96I GGNCC 9 cut(s) 298, 665, 710, 935, 1020, 1728, 2087, 2785, 3350
SchI GAGTC 8 cut(s) 101, 541, 1656, 1902, 2294, 2702, 2797, 3144
ScrFI CCNGG 7 cut(s) 137, 741, 813, 1132, 1133, 1617, 3406
SduI GDGCHC 6 cut(s) 706, 912, 1250, 1511, 1631, 2052
SfcI CTRYAG 2 cut(s) 1193, 1449
SinI GGWCC 5 cut(s) 298, 665, 710, 1020, 3350
SmaI CCCGGG 1 cut(s) 1133
SmiMI CAYNNNNRTG 2 cut(s) 1634, 2458
SmlI CTYRAG 6 cut(s) 10, 302, 2673, 2759, 3145, 3339
SmoI CTYRAG 6 cut(s) 10, 302, 2673, 2759, 3145, 3339
SnaBI TACGTA 1 cut(s) 2563
SphI GCATGC 1 cut(s) 2535
SsiI CCGC 9 cut(s) 1359, 1416, 1812, 1887, 1959, 2264, 2402, 2580, 3201
SspI AATATT 2 cut(s) 242, 1078
SspMI CTAG 9 cut(s) 83, 831, 1085, 1808, 1899, 1905, 2084, 2436, 3378
StyD4I CCNGG 7 cut(s) 135, 739, 811, 1130, 1131, 1615, 3404
StyI CCWWGG 2 cut(s) 706, 857
TaaI ACNGT 5 cut(s) 42, 73, 510, 2457, 3116
TaiI ACGT 3 cut(s) 1356, 2134, 2565
TaqI TCGA 4 cut(s) 159, 255, 2127, 3160
TatI WGTACW 1 cut(s) 2334
TauI GCSGC 2 cut(s) 1814, 2404
TscAI CASTG 4 cut(s) 1197, 1233, 1509, 3291
TseFI GTSAC 2 cut(s) 2765, 3110
Tsp45I GTSAC 2 cut(s) 2765, 3110
TspGWI ACGGA 2 cut(s) 480, 1753
TspMI CCCGGG 1 cut(s) 1131
TspRI CASTG 4 cut(s) 1197, 1233, 1509, 3291
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 2 cut(s) 680, 2924
Vha464I CTTAAG 3 cut(s) 302, 2759, 3145
VneI GTGCAC 1 cut(s) 1627
VpaK11BI GGWCC 5 cut(s) 298, 665, 710, 1020, 3350
XagI CCTNNNNNAGG 2 cut(s) 13, 1004
XapI RAATTY 3 cut(s) 1823, 2250, 2478
XceI RCATGY 2 cut(s) 2535, 3293
XcmI CCANNNNNNNNNTGG 1 cut(s) 3263
XmaI CCCGGG 1 cut(s) 1131
XmnI GAANNNNTTC 3 cut(s) 72, 215, 1802
XspI CTAG 9 cut(s) 83, 831, 1085, 1808, 1899, 1905, 2084, 2436, 3378
Zsp2I ATGCAT 1 cut(s) 2537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.