FvH4_6g29910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004314
Physical Location & Seq
Reverse (-)
23128310 .. 23129140
831 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29910.t1

Sequence Viewer

Length: 357 bp
ATGTCTTCTGTGCTAAGCTCTCAAGGTCTGGTCTTGGCAACCGCCATGGCCATCTCCAGCACCCTCGTCTTTCTTGCTTTCTCCAGAAAACAAACTCTCCCAGAACCCCAGAACACAACAAAGCAAAGTCCTACTCTGCGGTCTTGCTTGTCTTCAGGTGATAAGAAGAGGGATAGAAAGAAAAAGAAAGTGCGTTTTGCTGAGAATGTTGAGGAGGAAAAGATGGTGGAGAGAGTTACGGAGTCGTCGTCTAAAAGAGTTGAAAGAAGTTGCAGAAACCAAATTCCTGAGAATCAAGCTGCCTTGTACAGTGGAATTCTTAGAGACCGGGTGCAGAGGATGGCGTGTTCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.32

Weight (kDa)

10.02

Isoelectric Point (pI)

83.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 42, 139
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 2 cut(s) 282, 315
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 1 cut(s) 263
AloI GAACNNNNNNTCC 1 cut(s) 331
AluBI AGCT 2 cut(s) 18, 299
AluI AGCT 2 cut(s) 18, 299
Alw26I GTCTC 1 cut(s) 318
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 2 cut(s) 282, 315
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 170
BalI TGGCCA 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 286
BccI CCATC 3 cut(s) 59, 217, 334
BcnI CCSGG 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 318
BisI GCNGC 1 cut(s) 300
BlpI GCTNAGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 144
BpmI CTGGAG 2 cut(s) 40, 67
Bpu1102I GCTNAGC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 233, 263
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 192, 279
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 353
BshFI GGCC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 318
BsnI GGCC 1 cut(s) 50
Bso31I GGTCTC 1 cut(s) 318
Bsp1407I TGTACA 1 cut(s) 306
Bsp1720I GCTNAGC 1 cut(s) 14
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 42, 139
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 193, 280
BspTNI GGTCTC 1 cut(s) 318
BsrGI TGTACA 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 1 cut(s) 161
BstAUI TGTACA 1 cut(s) 306
BstDEI CTNAG 4 cut(s) 14, 201, 288, 320
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 316
Csp6I GTAC 1 cut(s) 307
CviAII CATG 1 cut(s) 46
CviJI RGCY 3 cut(s) 18, 50, 299
CviKI_1 RGCY 3 cut(s) 18, 50, 299
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 4 cut(s) 14, 201, 288, 320
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 49
FaiI YATR 2 cut(s) 47, 352
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 1 cut(s) 300
GluI GCNGC 1 cut(s) 300
GsuI CTGGAG 2 cut(s) 40, 67
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 328
Hin1II CATG 1 cut(s) 49
HinfI GANTC 2 cut(s) 242, 292
HpaII CCGG 1 cut(s) 328
HphI GGTGA 1 cut(s) 170
Hpy188III TCNNGA 2 cut(s) 84, 287
Hpy99I CGWCG 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 273, 334
HpyF3I CTNAG 4 cut(s) 14, 201, 288, 320
Hsp92II CATG 1 cut(s) 49
LpnPI CCDG 8 cut(s) 14, 70, 97, 114, 122, 141, 300, 341
Lsp1109I GCAGC 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 235
MboII GAAGA 2 cut(s) 144, 178
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 2 cut(s) 282, 315
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 5 cut(s) 74, 162, 205, 208, 330
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 50
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 1 cut(s) 329
NciI CCSGG 1 cut(s) 329
NcoI CCATGG 1 cut(s) 45
NlaIII CATG 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 1 cut(s) 301
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SatI GCNGC 1 cut(s) 300
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 329
SetI ASST 4 cut(s) 20, 28, 160, 301
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 2 cut(s) 282, 315
SsiI CCGC 2 cut(s) 42, 139
StyD4I CCNGG 1 cut(s) 327
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 311
TasI AATT 2 cut(s) 282, 315
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 1 cut(s) 292
TscAI CASTG 1 cut(s) 316
TseI GCWGC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 339
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 1 cut(s) 316
XapI RAATTY 2 cut(s) 282, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.