Prupe.3G084900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0004314
Physical Location & Seq
Forward (+)
6262184 .. 6263130
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G084900.1

Sequence Viewer

Length: 387 bp
ATGTCTTCTATGCTGAGCTCTCAAGGTCTGGTCTTGGCCACAGCCATGGCCGTCTCAAGCACTCTCGTCTTCCTTGCTTTCTCTAGGCAGAAGACTTTCCTACCAACCCAACTTTCTGATAGCTACAATTCCCAGCAAAATCCAAAGAAAACTGCTCTGCGTTCTTGCTTGTGTTCAGGTGATAAGAAGAGGGAGAGGAAGAAAAAGAAAGTGCATTTTGCTAAAAATGTTGTGAAGGAGCCAACTGGCGGTGGAGAGGAAATGGTGATGAGAAAGCAGAGCAAAGTTGAGAGAAGAAGTTGCAGAAACGAAATTCCTGAGAATCGGATTGCTTTGTACAATGGAATTCTCAAGAACCGTGTGGAAAGGATGCAGTGTTCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.5

Weight (kDa)

10.23

Isoelectric Point (pI)

59.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 249
AcoI YGGCCR 2 cut(s) 36, 48
AcsI RAATTY 2 cut(s) 312, 345
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 248
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AloI GAACNNNNNNTCC 1 cut(s) 361
AluBI AGCT 2 cut(s) 18, 123
AluI AGCT 2 cut(s) 18, 123
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 58
AoxI GGCC 2 cut(s) 36, 48
ApoI RAATTY 2 cut(s) 312, 345
Asp700I GAANNNNTTC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 191, 277
BalI TGGCCA 1 cut(s) 38
BanII GRGCYC 1 cut(s) 20
BbsI GAAGAC 2 cut(s) 61, 98
Bbv12I GWGCWC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 1 cut(s) 84
BlpI GCTNAGC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 240
BmsI GCATC 1 cut(s) 360
BpiI GAAGAC 2 cut(s) 61, 98
Bpu1102I GCTNAGC 1 cut(s) 14
BpuEI CTTGAG 3 cut(s) 6, 40, 335
BsaJI CCNNGG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 2 cut(s) 5, 309
BseNI ACTGG 1 cut(s) 250
BseYI CCCAGC 1 cut(s) 132
BshFI GGCC 2 cut(s) 38, 50
BsiHKAI GWGCWC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 58
BsmBI CGTCTC 1 cut(s) 58
BsnI GGCC 2 cut(s) 38, 50
Bsp1286I GDGCHC 1 cut(s) 20
Bsp1407I TGTACA 1 cut(s) 336
Bsp1720I GCTNAGC 1 cut(s) 14
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 1 cut(s) 249
BspANI GGCC 2 cut(s) 38, 50
BspCNI CTCAG 2 cut(s) 6, 310
BspLI GGNNCC 1 cut(s) 240
BsrGI TGTACA 1 cut(s) 336
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 336
BstDEI CTNAG 2 cut(s) 14, 318
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 375
BstMAI GTCTC 1 cut(s) 58
BstV2I GAAGAC 2 cut(s) 61, 98
BstXI CCANNNNNNTGG 1 cut(s) 46
BsuRI GGCC 2 cut(s) 38, 50
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 375
BtsI GCAGTG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 380
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 46
CviJI RGCY 6 cut(s) 18, 38, 44, 50, 123, 241
CviKI_1 RGCY 6 cut(s) 18, 38, 44, 50, 123, 241
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 2 cut(s) 14, 318
EaeI YGGCCR 2 cut(s) 36, 48
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 1 cut(s) 49
FaiI YATR 2 cut(s) 11, 47
FatI CATG 1 cut(s) 45
FokI GGATG 1 cut(s) 382
FriOI GRGCYC 1 cut(s) 20
FspBI CTAG 1 cut(s) 84
GsaI CCCAGC 1 cut(s) 136
HaeIII GGCC 2 cut(s) 38, 50
Hin1II CATG 1 cut(s) 49
HinfI GANTC 1 cut(s) 322
HphI GGTGA 2 cut(s) 191, 277
Hpy188I TCNGA 2 cut(s) 118, 327
Hpy188III TCNNGA 2 cut(s) 317, 352
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4V TGCA 3 cut(s) 214, 303, 373
HpyF3I CTNAG 2 cut(s) 14, 318
Hsp92II CATG 1 cut(s) 49
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 5 cut(s) 14, 146, 162, 231, 330
LweI GCATC 1 cut(s) 360
MaeI CTAG 1 cut(s) 84
MboII GAAGA 5 cut(s) 61, 103, 199, 211, 306
MhlI GDGCHC 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 3 cut(s) 127, 312, 345
MluNI TGGCCA 1 cut(s) 38
MnlI CCTC 3 cut(s) 183, 189, 250
Mox20I TGGCCA 1 cut(s) 38
MroXI GAANNNNTTC 1 cut(s) 95
MscI TGGCCA 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 44
Msp20I TGGCCA 1 cut(s) 38
NcoI CCATGG 1 cut(s) 45
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 322
Psp124BI GAGCTC 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 240
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 44
SacI GAGCTC 1 cut(s) 20
SduI GDGCHC 1 cut(s) 20
SetI ASST 4 cut(s) 20, 28, 125, 181
SfaNI GCATC 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 3 cut(s) 21, 55, 350
SmoI CTYRAG 3 cut(s) 21, 55, 350
Sse9I AATT 3 cut(s) 127, 312, 345
SsiI CCGC 1 cut(s) 249
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 20
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 359
TasI AATT 3 cut(s) 127, 312, 345
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 1 cut(s) 322
TscAI CASTG 1 cut(s) 380
TspRI CASTG 1 cut(s) 380
XapI RAATTY 2 cut(s) 312, 345
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.