pycom09g14090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0004314
Physical Location & Seq
Forward (+)
13366162 .. 13366648
487 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g14090.1

Sequence Viewer

Length: 312 bp
ATGTCTTCTATGCTGAGCTCGCAAGCTTTTGTCCTGGCAACTGCCATGGCCGTCTCCAGCACTCTCGTTTGTCTTGTTTTCTCCCGGCAAAAGACTTTACCACCAACCCAACTTGCCAATCAGTCTCCAAACCAAATCCCTCTGCGTTCTTGCTTGTGTTCAGGTGACAAGAAGAGGGAGAGGAAGAAAAAGAGGGTGCATTTTGCTGAAAATATTGACGAGGAGGAGCCAATTGGGGATGGAGAGGAGGAAGAACCGATCGGTAGAAAGCAGAGCAAACTCAAAACAAGTTGCAGAAACGAAATTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.54

Weight (kDa)

9.04

Isoelectric Point (pI)

88.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 303
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 2 cut(s) 18, 26
AluI AGCT 2 cut(s) 18, 26
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 58, 129
AoxI GGCC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 303
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 176
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 20
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 35
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 58, 129
BlpI GCTNAGC 1 cut(s) 14
Bme1390I CCNGG 2 cut(s) 35, 85
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 2 cut(s) 35, 85
BpmI CTGGAG 1 cut(s) 40
Bpu1102I GCTNAGC 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 5
BseRI GAGGAG 3 cut(s) 236, 239, 260
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 50
BsiEI CGRYCG 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 58, 129
BsmBI CGTCTC 1 cut(s) 58
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 258
Bsp1720I GCTNAGC 1 cut(s) 14
Bsp19I CCATGG 1 cut(s) 45
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 20, 24
BstDEI CTNAG 1 cut(s) 14
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 2 cut(s) 58, 129
BstMBI GATC 1 cut(s) 258
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 33, 83
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 244
Cac8I GCNNGC 2 cut(s) 20, 24
CviAII CATG 1 cut(s) 46
CviJI RGCY 4 cut(s) 18, 26, 50, 229
CviKI_1 RGCY 4 cut(s) 18, 26, 50, 229
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 1 cut(s) 49
FaiI YATR 2 cut(s) 11, 47
FatI CATG 1 cut(s) 45
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 85
Hin1II CATG 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 24
HpaII CCGG 1 cut(s) 85
HphI GGTGA 1 cut(s) 176
HpyCH4V TGCA 2 cut(s) 199, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 1 cut(s) 49
Kzo9I GATC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 5 cut(s) 20, 47, 70, 98, 147
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 3 cut(s) 184, 196, 263
MfeI CAATTG 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 2 cut(s) 231, 303
MnlI CCTC 8 cut(s) 150, 168, 174, 186, 214, 217, 238, 241
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 2 cut(s) 35, 85
MunI CAATTG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 19
NciI CCSGG 1 cut(s) 85
NcoI CCATGG 1 cut(s) 45
NdeII GATC 1 cut(s) 258
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 164
Ple19I CGATCG 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 228
PvuI CGATCG 1 cut(s) 261
SacI GAGCTC 1 cut(s) 20
Sau3AI GATC 1 cut(s) 258
ScrFI CCNGG 2 cut(s) 35, 85
SduI GDGCHC 1 cut(s) 20
SetI ASST 3 cut(s) 20, 28, 166
Sse9I AATT 2 cut(s) 231, 303
SspI AATATT 1 cut(s) 214
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 33, 83
StyI CCWWGG 1 cut(s) 45
TaqI TCGA 1 cut(s) 307
TasI AATT 2 cut(s) 231, 303
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
XapI RAATTY 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.