Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004314

Physical Location & Seq

Genomic Coordinates Reverse (-)

3050566 .. 3051592

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG038000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCTTCCATGTTGGGCTCACAAGGCGTGGTCTTGGCGACGGCCATGGCTGTCTCCGGCACTGTCCTCCTCCTCGCTTTTCGCCTTCAGAAACCGGCAGATCACCACCAAATTTCTCAGTCCACTCCCAAAATTCTACGATCTTGTATCTCTTCTGAGAAGACGAGGAAGAACAAGAAGAAGAGAGTTCACTTTGCAAAGGATGTGGTGGATCCAATTGGGGATGGGGAAGAGTTCAGAAGGCAGATCATTGCTTCTTCTTCTTCTTCTTCATCATCAGCATCAGCATCACTAAACTTTAAAAAGACTAGTGGAGGTGCTCAGAAATATAAAGGAATGCCAGCAAACCGAGTGGCTCTCTATAATGGGATACTTAGGGATCGTGTGGTTCATCATCGATTGGCCTACTCGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPI_Ypi1

Protein Analysis

138

Amino Acids

15.02

Weight (kDa)

10.55

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52565 AT3G15760
fragaria_vesca	FvH4_1g03160 FvH4_6g29910
malus_domestica	MD02G1030600.v1.1 MD15G1172200.v1.1 MD17G1209300.v1.1
prunus_persica	Prupe.3G084900_v2.0.a1 Prupe.7G243900_v2.0.a1
pyrus_communis	pycom02g02550 pycom09g14090 pycom17g21500
rosa_chinensis	RchiOBHm_Chr2g0088291 RchiOBHm_Chr2g0135861
rosa_laevigata	RLG00000015939 RLG00000019488
rosa_multiflora	Rmu_sc0004235.1_g000039 Rmu_sc0007848.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108800 Rroxscaffold_2G00152770
rosa_rugosa	Rorug01G0482600 Rorug02G0326700
rosa_samantha	Rh2AG037700 Rh2AG378200 Rh2BG036900 Rh2BG384600 Rh2CG038000 Rh2CG364000 Rh2DG037400 Rh2DG401100
rosa_wichuraiana	Rw2G002970 Rw2G030810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	206, 219, 387
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	111, 132
AcuI	CTGAAG	1 cut(s)	71
AhlI	ACTAGT	1 cut(s)	308
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	3 cut(s)	206, 219, 387
AoxI	GGCC	2 cut(s)	42, 402
ApoI	RAATTY	2 cut(s)	111, 132
AsuHPI	GGTGA	1 cut(s)	95
BamHI	GGATCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	322
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	58
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	213
BmsI	GCATC	2 cut(s)	290, 296
BpiI	GAAGAC	1 cut(s)	167
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
Bsa29I	ATCGAT	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	249
BseCI	ATCGAT	1 cut(s)	397
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	208, 229
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	3 cut(s)	131, 147, 335
BseRI	GAGGAG	2 cut(s)	59, 62
BshFI	GGCC	2 cut(s)	44, 404
BshVI	ATCGAT	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	2 cut(s)	57, 95
BsmAI	GTCTC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	342
BsnI	GGCC	2 cut(s)	44, 404
Bsp1286I	GDGCHC	2 cut(s)	20, 322
Bsp143I	GATC	5 cut(s)	100, 140, 211, 246, 379
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	2 cut(s)	44, 404
BspCNI	CTCAG	3 cut(s)	130, 148, 334
BspDI	ATCGAT	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	3 cut(s)	206, 219, 387
BsrDI	GCAATG	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	5 cut(s)	100, 140, 211, 246, 379
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	3 cut(s)	157, 176, 225
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	4 cut(s)	117, 156, 321, 374
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	208, 229
BstKTI	GATC	5 cut(s)	103, 143, 214, 249, 382
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	5 cut(s)	100, 140, 211, 246, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	44, 404
BsuTUI	ATCGAT	1 cut(s)	397
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	208, 229
BtsIMutI	CAGTG	2 cut(s)	60, 412
Cac8I	GCNNGC	1 cut(s)	342
Cfr10I	RCCGGY	1 cut(s)	94
ClaI	ATCGAT	1 cut(s)	397
CspCI	CAANNNNNGTGG	4 cut(s)	186, 221, 333, 368
CviAII	CATG	2 cut(s)	10, 46
CviJI	RGCY	5 cut(s)	18, 44, 50, 356, 404
CviKI_1	RGCY	5 cut(s)	18, 44, 50, 356, 404
DdeI	CTNAG	4 cut(s)	117, 156, 321, 374
DpnI	GATC	5 cut(s)	102, 142, 213, 248, 381
DpnII	GATC	5 cut(s)	100, 140, 211, 246, 379
DraI	TTTAAA	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	3 cut(s)	157, 176, 225
EarI	CTCTTC	3 cut(s)	157, 176, 225
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	13, 49
FaiI	YATR	4 cut(s)	11, 47, 330, 363
FatI	CATG	2 cut(s)	9, 45
FokI	GGATG	2 cut(s)	215, 236
FriOI	GRGCYC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	44, 404
HapII	CCGG	2 cut(s)	57, 95
Hin1II	CATG	2 cut(s)	13, 49
HpaII	CCGG	2 cut(s)	57, 95
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	123, 190
Hpy188I	TCNGA	4 cut(s)	90, 157, 239, 324
Hpy8I	GTNNAC	2 cut(s)	123, 190
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	95, 234
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	4 cut(s)	117, 156, 321, 374
Hsp92II	CATG	2 cut(s)	13, 49
Kzo9I	GATC	5 cut(s)	100, 140, 211, 246, 379
LpnPI	CCDG	3 cut(s)	70, 108, 354
LweI	GCATC	2 cut(s)	290, 296
MaeI	CTAG	1 cut(s)	309
MalI	GATC	5 cut(s)	102, 142, 213, 248, 381
MboI	GATC	5 cut(s)	100, 140, 211, 246, 379
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	20, 322
MluCI	AATT	3 cut(s)	111, 132, 216
MnlI	CCTC	5 cut(s)	77, 80, 83, 159, 308
MseI	TTAA	1 cut(s)	300
MspI	CCGG	2 cut(s)	57, 95
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	5 cut(s)	100, 140, 211, 246, 379
NlaIII	CATG	2 cut(s)	13, 49
NlaIV	GGNNCC	1 cut(s)	213
PctI	GAATGC	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	300
Sau3AI	GATC	5 cut(s)	100, 140, 211, 246, 379
SduI	GDGCHC	2 cut(s)	20, 322
SetI	ASST	1 cut(s)	319
SfaNI	GCATC	2 cut(s)	290, 296
SpeI	ACTAGT	1 cut(s)	308
Sse9I	AATT	3 cut(s)	111, 132, 216
SspMI	CTAG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	397
TasI	AATT	3 cut(s)	111, 132, 216
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	261, 380
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	2 cut(s)	111, 132
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.