Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004314

Physical Location & Seq

Genomic Coordinates Reverse (-)

2392016 .. 2393109

Gene Structure 1094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1030600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCTTCAGTGTTAGGCTCTCAAGGGGTGGTCTTGGCCACTGCCATGGCGGTTTCCGGCACCTTCATCCTCCTCGCCCTCCGCCTCCAGAAATGCCTACCCAATCCTCACGGATACCCAGTTGGTGAAATTACCCATCAGTCCTCCCCTCAAATACTACGATCTTGTATATCTTCTGATGGAAAGAAGAGGAGGAAGAAGAACAAGAGGGTGCACTTTGCAGAGGACGTCGTGGATCCGATTGGAGACAATCAAGAGTTTAGACGGCAGTACCAGATAATTCCCACTGCTTCTTCCAAATCTTCATCATCTTCTGCATCTTCTGCAACTTCCCAAAAATACAGAGGATCCATGCCTGCTAATCGGGCGGCTCTGTACAATGGGATTCTCAGGGATCGTGGCTGTCACCGATTGGCCTACTCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPI_Ypi1

Protein Analysis

143

Amino Acids

15.53

Weight (kDa)

10.13

Isoelectric Point (pI)

73.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52565 AT3G15760
fragaria_vesca	FvH4_1g03160 FvH4_6g29910
malus_domestica	MD02G1030600.v1.1 MD15G1172200.v1.1 MD17G1209300.v1.1
prunus_persica	Prupe.3G084900_v2.0.a1 Prupe.7G243900_v2.0.a1
pyrus_communis	pycom02g02550 pycom09g14090 pycom17g21500
rosa_chinensis	RchiOBHm_Chr2g0088291 RchiOBHm_Chr2g0135861
rosa_laevigata	RLG00000015939 RLG00000019488
rosa_multiflora	Rmu_sc0004235.1_g000039 Rmu_sc0007848.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108800 Rroxscaffold_2G00152770
rosa_rugosa	Rorug01G0482600 Rorug02G0326700
rosa_samantha	Rh2AG037700 Rh2AG378200 Rh2BG036900 Rh2BG384600 Rh2CG038000 Rh2CG364000 Rh2DG037400 Rh2DG401100
rosa_wichuraiana	Rw2G002970 Rw2G030810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	59
AciI	CCGC	3 cut(s)	50, 82, 368
AclWI	GGATC	5 cut(s)	230, 243, 342, 355, 402
AcoI	YGGCCR	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	2 cut(s)	272, 377
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	240
Alw44I	GTGCAC	1 cut(s)	212
AlwI	GGATC	5 cut(s)	230, 243, 342, 355, 402
AoxI	GGCC	2 cut(s)	36, 414
ApaLI	GTGCAC	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	137, 398
BaeGI	GKGCMC	1 cut(s)	216
BaeI	ACNNNNGTAYC	2 cut(s)	254, 287
BalI	TGGCCA	1 cut(s)	38
BamHI	GGATCC	2 cut(s)	235, 347
BanI	GGYRCC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	216
BccI	CCATC	2 cut(s)	144, 173
BceAI	ACGGC	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	107
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
BmiI	GGNNCC	3 cut(s)	61, 237, 349
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	326
BmuI	ACTGGG	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	6
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	403
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	2 cut(s)	62, 205
BseSI	GKGCMC	1 cut(s)	216
BshFI	GGCC	2 cut(s)	38, 416
BshNI	GGYRCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	38, 416
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	161, 235, 347, 394
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	3 cut(s)	50, 82, 368
BspANI	GGCC	2 cut(s)	38, 416
BspCNI	CTCAG	1 cut(s)	402
BspLI	GGNNCC	3 cut(s)	61, 237, 349
BspPI	GGATC	5 cut(s)	230, 243, 342, 355, 402
BspT107I	GGYRCC	1 cut(s)	59
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	4 cut(s)	161, 235, 347, 394
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstAUI	TGTACA	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	389
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	4 cut(s)	164, 238, 350, 397
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	4 cut(s)	161, 235, 347, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 365
BstSLI	GKGCMC	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	235, 347
BstXI	CCANNNNNNTGG	1 cut(s)	46
BstYI	RGATCY	2 cut(s)	235, 347
BsuI	GTATCC	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	38, 416
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	66
BtsI	GCAGTG	2 cut(s)	39, 285
BtsIMutI	CAGTG	3 cut(s)	15, 39, 285
Cac8I	GCNNGC	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	271, 376
CviAII	CATG	2 cut(s)	46, 352
CviJI	RGCY	5 cut(s)	18, 38, 371, 402, 416
CviKI_1	RGCY	5 cut(s)	18, 38, 371, 402, 416
CviQI	GTAC	2 cut(s)	271, 376
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	4 cut(s)	163, 237, 349, 396
DpnII	GATC	4 cut(s)	161, 235, 347, 394
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	49, 355
FaiI	YATR	3 cut(s)	47, 170, 353
FatI	CATG	2 cut(s)	45, 351
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	369
GluI	GCNGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	38, 416
HapII	CCGG	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	49, 355
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	2 cut(s)	137, 398
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	178, 240
Hpy188III	TCNNGA	2 cut(s)	88, 254
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	214, 221, 317, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 365
HpyF3I	CTNAG	1 cut(s)	389
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	49, 355
Kzo9I	GATC	4 cut(s)	161, 235, 347, 394
LpnPI	CCDG	6 cut(s)	70, 101, 132, 287, 369, 376
LweI	GCATC	1 cut(s)	326
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	4 cut(s)	163, 237, 349, 396
MboI	GATC	4 cut(s)	161, 235, 347, 394
MboII	GAAGA	8 cut(s)	165, 199, 208, 211, 285, 294, 303, 312
MflI	RGATCY	2 cut(s)	235, 347
MhlI	GDGCHC	1 cut(s)	216
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	2 cut(s)	129, 279
MluNI	TGGCCA	1 cut(s)	38
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	323, 365
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	4 cut(s)	161, 235, 347, 394
NlaIII	CATG	2 cut(s)	49, 355
NlaIV	GGNNCC	3 cut(s)	61, 237, 349
NmuCI	GTSAC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	370
PspN4I	GGNNCC	3 cut(s)	61, 237, 349
PsuI	RGATCY	2 cut(s)	235, 347
RsaI	GTAC	2 cut(s)	272, 377
RsaNI	GTAC	2 cut(s)	271, 376
RseI	CAYNNNNRTG	1 cut(s)	44
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	4 cut(s)	161, 235, 347, 394
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	2 cut(s)	65, 231
SfaNI	GCATC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	2 cut(s)	129, 279
SsiI	CCGC	3 cut(s)	50, 82, 368
StyI	CCWWGG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	231
TasI	AATT	2 cut(s)	129, 279
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	385
TscAI	CASTG	3 cut(s)	15, 46, 292
TseFI	GTSAC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	55, 294
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	3 cut(s)	15, 46, 292
VneI	GTGCAC	1 cut(s)	212
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.