Prupe.7G243900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0004314
Physical Location & Seq
Forward (+)
20862750 .. 20864056
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G243900.1

Sequence Viewer

Length: 459 bp
ATGTCTTCAGTGTTAGGCTCACAAGGGGTGGTCTTGGCCACAGCCATGGCGGTCTCTGGCACTGTCATCCTCCTAGCTCTTCGCCTACAGAAATCCTTGCCCAATTCTCACTTCCCTGTTGACCAAATCAACCAGTCCTCGCCTCAAATTCTACGATCTTGTATATCTTCTGAAGGAAAGAAGAGGAGGAAGAAGAACAAAAGGGTGCACTTTGCAGAGGATGTGGTGGATCCAAGTGGAGATGGTCAGGAGTTTAGAAGGCAGCATCAGATAATTACCTCCACTTCTTCCAATTCTTCTTCTTCTTGCTTGTCGGCATCTTCAACTTCATCTACAGTACTGAATTTTAAAAAGACAAGGGCCCAAAAATTCAAAGGACCAATGCCTGCTAACCGCGCGGCTCTCTACAATGGAATTCTCAGGGATCGTGTGGTTCACCGATTGGCCTACTCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPI_Ypi1

Protein Analysis

153

Amino Acids

16.62

Weight (kDa)

10.63

Isoelectric Point (pI)

68.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 396, 398
AciI CCGC 3 cut(s) 50, 394, 398
AclWI GGATC 3 cut(s) 224, 237, 432
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 4 cut(s) 147, 343, 368, 414
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 1 cut(s) 339
AgsI TTSAA 2 cut(s) 324, 373
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 58
Alw44I GTGCAC 1 cut(s) 206
AlwI GGATC 3 cut(s) 224, 237, 432
AoxI GGCC 3 cut(s) 36, 360, 444
ApaI GGGCCC 1 cut(s) 364
ApaLI GTGCAC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 262
ApoI RAATTY 4 cut(s) 147, 343, 368, 414
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 3 cut(s) 360, 361, 377
AsuHPI GGTGA 1 cut(s) 428
AvaII GGWCC 1 cut(s) 377
BaeGI GKGCMC 2 cut(s) 210, 364
BalI TGGCCA 1 cut(s) 38
BamHI GGATCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 364
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 274
BccI CCATC 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 2 cut(s) 86, 333
BisI GCNGC 2 cut(s) 263, 399
BlsI GCNGC 2 cut(s) 264, 400
BmcAI AGTACT 1 cut(s) 339
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 3 cut(s) 360, 361, 377
BmiI GGNNCC 2 cut(s) 231, 362
BmsI GCATC 2 cut(s) 274, 326
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 66, 226
BseMII CTCAG 1 cut(s) 433
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 199
BseSI GKGCMC 2 cut(s) 210, 364
BseXI GCAGC 1 cut(s) 274
Bsh1236I CGCG 2 cut(s) 396, 398
BshFI GGCC 3 cut(s) 38, 362, 446
BsiHKAI GWGCWC 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 3 cut(s) 38, 362, 446
Bso31I GGTCTC 1 cut(s) 58
Bsp120I GGGCCC 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 210, 364
Bsp143I GATC 3 cut(s) 155, 229, 424
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 3 cut(s) 50, 394, 398
BspANI GGCC 3 cut(s) 38, 362, 446
BspCNI CTCAG 1 cut(s) 432
BspFNI CGCG 2 cut(s) 396, 398
BspLI GGNNCC 2 cut(s) 231, 362
BspPI GGATC 3 cut(s) 224, 237, 432
BspQI GCTCTTC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 3 cut(s) 155, 229, 424
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 64, 337
Bst6I CTCTTC 2 cut(s) 84, 176
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 1 cut(s) 419
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 66, 226
BstFNI CGCG 2 cut(s) 396, 398
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 3 cut(s) 158, 232, 427
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 3 cut(s) 155, 229, 424
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstSFI CTRYAG 2 cut(s) 86, 333
BstSLI GKGCMC 2 cut(s) 210, 364
BstUI CGCG 2 cut(s) 396, 398
BstV1I GCAGC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 229
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 3 cut(s) 38, 362, 446
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 66, 226
BtsIMutI CAGTG 2 cut(s) 15, 60
Cac8I GCNNGC 1 cut(s) 387
CfoI GCGC 1 cut(s) 398
Cfr13I GGNCC 3 cut(s) 360, 361, 377
Csp6I GTAC 1 cut(s) 338
CviAII CATG 1 cut(s) 46
CviJI RGCY 7 cut(s) 18, 38, 44, 77, 362, 401, 446
CviKI_1 RGCY 7 cut(s) 18, 38, 44, 77, 362, 401, 446
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 1 cut(s) 419
DpnI GATC 3 cut(s) 157, 231, 426
DpnII GATC 3 cut(s) 155, 229, 424
DraI TTTAAA 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 84, 176
EarI CTCTTC 2 cut(s) 84, 176
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 364
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 360
EcoRI GAATTC 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 47, 164, 454
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 263, 399
FokI GGATG 2 cut(s) 53, 233
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 263, 399
FspBI CTAG 1 cut(s) 74
GlaI GCGC 1 cut(s) 397
GluI GCNGC 2 cut(s) 263, 399
HaeIII GGCC 3 cut(s) 38, 362, 446
HhaI GCGC 1 cut(s) 398
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 3 cut(s) 121, 208, 436
Hpy188I TCNGA 2 cut(s) 172, 270
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 3 cut(s) 121, 208, 436
HpyAV CCTTC 2 cut(s) 167, 252
HpyCH4III ACNGT 2 cut(s) 64, 337
HpyCH4V TGCA 2 cut(s) 208, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 419
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 1 cut(s) 396
Kzo9I GATC 3 cut(s) 155, 229, 424
LguI GCTCTTC 1 cut(s) 84
LpnPI CCDG 6 cut(s) 42, 129, 146, 233, 399, 406
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 2 cut(s) 274, 326
MaeI CTAG 1 cut(s) 74
MalI GATC 3 cut(s) 157, 231, 426
MboI GATC 3 cut(s) 155, 229, 424
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 2 cut(s) 210, 364
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 7 cut(s) 103, 147, 273, 292, 343, 368, 414
MluNI TGGCCA 1 cut(s) 38
MnlI CCTC 7 cut(s) 80, 148, 153, 177, 180, 211, 289
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 44
Msp20I TGGCCA 1 cut(s) 38
MvnI CGCG 2 cut(s) 396, 398
MwoI GCNNNNNNNGC 1 cut(s) 395
NcoI CCATGG 1 cut(s) 45
NdeII GATC 3 cut(s) 155, 229, 424
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 231, 362
PciSI GCTCTTC 1 cut(s) 84
PkrI GCNGC 2 cut(s) 264, 400
PspN4I GGNNCC 2 cut(s) 231, 362
PspOMI GGGCCC 1 cut(s) 360
PspPI GGNCC 3 cut(s) 360, 361, 377
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
RseI CAYNNNNRTG 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 2 cut(s) 263, 399
Sau3AI GATC 3 cut(s) 155, 229, 424
Sau96I GGNCC 3 cut(s) 360, 361, 377
ScaI AGTACT 1 cut(s) 339
SduI GDGCHC 2 cut(s) 210, 364
SetI ASST 2 cut(s) 79, 281
SfaNI GCATC 2 cut(s) 274, 326
SfcI CTRYAG 2 cut(s) 86, 333
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 44
Sse9I AATT 7 cut(s) 103, 147, 273, 292, 343, 368, 414
SsiI CCGC 3 cut(s) 50, 394, 398
SspMI CTAG 1 cut(s) 74
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 64, 337
TasI AATT 7 cut(s) 103, 147, 273, 292, 343, 368, 414
TatI WGTACW 1 cut(s) 337
TauI GCSGC 1 cut(s) 401
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 2 cut(s) 15, 67
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 318
TspRI CASTG 2 cut(s) 15, 67
VneI GTGCAC 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 4 cut(s) 147, 343, 368, 414
XspI CTAG 1 cut(s) 74
ZrmI AGTACT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.