Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004235.1

Orthogroup ID

OG0004314

Physical Location & Seq

Genomic Coordinates Forward (+)

86617 .. 89236

Gene Structure 2620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004235.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgtctgatgcggagagcttccgaacaatattccataactttgtcaaagttagagaagcagagataattccatcatgcttctacgttcagaaaattgtgaatgttgttaaaacattcacgaagagctacccaaaggtttctagcgctatcctcactcatgtactcaaactggatgccatctctatgtggcgcttcatcagggtaagtgccctgaaattatctatctcagttttgtgctacagcagcaggcagcagcgtgcgcgtgaagcaggcaggcctgttgcggaaggcaagtgctcgggttgctgcggggcagactgtgcgcgcggagggaggctgcagggctgcgggttgcaggagagcagatgctaccgtgggctagtggtgcgcaggggctgcgcagatggggagcaacgagcacaggggcgtgtaagagctacgggggcagcgagcgcaggggcgcgtaggagctgggggtctgcagacggggagcaaaaagcgcaggggcgcgtaagagttattggggcgagcgagcgcagggctgggtggttagctcggctagggtttgcggcaattttggagactatgtcttccatgttgggctcacaaggcgtggtcttcgcgacggccatggctgtctccggcactgtcctcctcctcgcttttcgccttcagaaactggcagatcaccaccaaatttctcagtccactcccaaaattctacgatcttgtatctcttctgagaagaagaggaagaacaagaagaagagagttcactttgcaaaggatgtggtggatccaattggggatggggaagagttcagaaggcagatcattgcttcttcttcttcttcttcttcttcttcttcttcatcatcatcatcatcagcatcagcatcactaaactttaaaaagactagtggaggtgctcagaaatataaaggaatgccagcaaaccgagtggctctctataatgggatacttagggatcgtgtggttcatcatcgattggcctactcgcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPI_Ypi1

Protein Analysis

341

Amino Acids

37.04

Weight (kDa)

10.45

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52565 AT3G15760
fragaria_vesca	FvH4_1g03160 FvH4_6g29910
malus_domestica	MD02G1030600.v1.1 MD15G1172200.v1.1 MD17G1209300.v1.1
prunus_persica	Prupe.3G084900_v2.0.a1 Prupe.7G243900_v2.0.a1
pyrus_communis	pycom02g02550 pycom09g14090 pycom17g21500
rosa_chinensis	RchiOBHm_Chr2g0088291 RchiOBHm_Chr2g0135861
rosa_laevigata	RLG00000015939 RLG00000019488
rosa_multiflora	Rmu_sc0004235.1_g000039 Rmu_sc0007848.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108800 Rroxscaffold_2G00152770
rosa_rugosa	Rorug01G0482600 Rorug02G0326700
rosa_samantha	Rh2AG037700 Rh2AG378200 Rh2BG036900 Rh2BG384600 Rh2CG038000 Rh2CG364000 Rh2DG037400 Rh2DG401100
rosa_wichuraiana	Rw2G002970 Rw2G030810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	389, 400
AccII	CGCG	6 cut(s)	262, 325, 327, 463, 510, 623
AciI	CCGC	6 cut(s)	11, 284, 309, 327, 348, 569
AclWI	GGATC	3 cut(s)	791, 804, 996
AcoI	YGGCCR	1 cut(s)	627
AcsI	RAATTY	2 cut(s)	696, 717
AcuI	CTGAAG	1 cut(s)	656
AfaI	GTAC	1 cut(s)	162
AfeI	AGCGCT	1 cut(s)	145
AhlI	ACTAGT	1 cut(s)	917
AluBI	AGCT	5 cut(s)	18, 126, 437, 471, 554
AluI	AGCT	5 cut(s)	18, 126, 437, 471, 554
Alw21I	GWGCWC	3 cut(s)	299, 421, 931
Alw26I	GTCTC	2 cut(s)	575, 643
AlwI	GGATC	3 cut(s)	791, 804, 996
AlwNI	CAGNNNCTG	2 cut(s)	396, 679
Ama87I	CYCGRG	1 cut(s)	298
Aor51HI	AGCGCT	1 cut(s)	145
AoxI	GGCC	3 cut(s)	275, 627, 1011
ApeKI	GCWGC	8 cut(s)	243, 250, 253, 306, 337, 345, 396, 446
ApoI	RAATTY	2 cut(s)	696, 717
AsuHPI	GGTGA	1 cut(s)	680
AvaI	CYCGRG	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	796
BanII	GRGCYC	1 cut(s)	605
BbsI	GAAGAC	2 cut(s)	582, 610
Bbv12I	GWGCWC	3 cut(s)	299, 421, 931
BbvI	GCAGC	8 cut(s)	255, 262, 265, 293, 324, 332, 383, 458
BccI	CCATC	4 cut(s)	79, 185, 398, 803
BceAI	ACGGC	1 cut(s)	642
BciVI	GTATCC	1 cut(s)	972
BcoDI	GTCTC	2 cut(s)	575, 643
BcuI	ACTAGT	1 cut(s)	917
BfaI	CTAG	4 cut(s)	141, 380, 560, 918
BfmI	CTRYAG	3 cut(s)	238, 338, 480
BfoI	RGCGCY	2 cut(s)	147, 193
BfuI	GTATCC	1 cut(s)	972
BisI	GCNGC	9 cut(s)	244, 251, 254, 307, 338, 346, 397, 447, 570
BlsI	GCNGC	9 cut(s)	245, 252, 255, 308, 339, 347, 398, 448, 571
BmeT110I	CYCGRG	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	798
BmsI	GCATC	4 cut(s)	163, 356, 899, 905
BpiI	GAAGAC	2 cut(s)	582, 610
BplI	GAGNNNNNCTC	2 cut(s)	951, 983
Bsa29I	ATCGAT	1 cut(s)	1006
BsaJI	CCNNGG	2 cut(s)	373, 630
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bse1I	ACTGG	2 cut(s)	174, 684
Bse3DI	GCAATG	1 cut(s)	834
BseCI	ATCGAT	1 cut(s)	1006
BseDI	CCNNGG	2 cut(s)	373, 630
BseGI	GGATG	3 cut(s)	178, 793, 814
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	4 cut(s)	240, 716, 732, 944
BseNI	ACTGG	2 cut(s)	174, 684
BsePI	GCGCGC	1 cut(s)	323
BseRI	GAGGAG	2 cut(s)	644, 647
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	8 cut(s)	255, 262, 265, 293, 324, 332, 383, 458
BseYI	CCCAGC	2 cut(s)	471, 542
Bsh1236I	CGCG	6 cut(s)	262, 325, 327, 463, 510, 623
BshFI	GGCC	3 cut(s)	277, 629, 1013
BshVI	ATCGAT	1 cut(s)	1006
BsiHKAI	GWGCWC	3 cut(s)	299, 421, 931
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	642
BsmAI	GTCTC	2 cut(s)	575, 643
BsmI	GAATGC	1 cut(s)	951
BsnI	GGCC	3 cut(s)	277, 629, 1013
BsoBI	CYCGRG	1 cut(s)	298
Bsp1286I	GDGCHC	5 cut(s)	211, 299, 421, 605, 931
Bsp143I	GATC	5 cut(s)	685, 725, 796, 831, 988
Bsp19I	CCATGG	1 cut(s)	630
Bsp68I	TCGCGA	1 cut(s)	623
BspACI	CCGC	6 cut(s)	11, 284, 309, 327, 348, 569
BspANI	GGCC	3 cut(s)	277, 629, 1013
BspCNI	CTCAG	4 cut(s)	239, 715, 733, 943
BspDI	ATCGAT	1 cut(s)	1006
BspFNI	CGCG	6 cut(s)	262, 325, 327, 463, 510, 623
BspLI	GGNNCC	1 cut(s)	798
BspMAI	CTGCAG	2 cut(s)	342, 484
BspPI	GGATC	3 cut(s)	791, 804, 996
BspQI	GCTCTTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	834
BsrI	ACTGG	2 cut(s)	174, 684
BssECI	CCNNGG	2 cut(s)	373, 630
BssHII	GCGCGC	1 cut(s)	323
BssMI	GATC	5 cut(s)	685, 725, 796, 831, 988
BssT1I	CCWWGG	1 cut(s)	630
Bst4CI	ACNGT	3 cut(s)	320, 374, 649
Bst6I	CTCTTC	5 cut(s)	116, 742, 743, 761, 810
BstAPI	GCANNNNNTGC	2 cut(s)	320, 396
BstC8I	GCNNGC	9 cut(s)	248, 258, 271, 275, 325, 451, 529, 533, 951
BstDEI	CTNAG	5 cut(s)	226, 702, 741, 930, 983
BstDSI	CCRYGG	2 cut(s)	373, 630
BstF5I	GGATG	3 cut(s)	178, 793, 814
BstFNI	CGCG	6 cut(s)	262, 325, 327, 463, 510, 623
BstH2I	RGCGCY	2 cut(s)	147, 193
BstKTI	GATC	5 cut(s)	688, 728, 799, 834, 991
BstMAI	GTCTC	2 cut(s)	575, 643
BstMBI	GATC	5 cut(s)	685, 725, 796, 831, 988
BstSFI	CTRYAG	3 cut(s)	238, 338, 480
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	6 cut(s)	262, 325, 327, 463, 510, 623
BstV1I	GCAGC	8 cut(s)	255, 262, 265, 293, 324, 332, 383, 458
BstV2I	GAAGAC	2 cut(s)	582, 610
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
Bsu15I	ATCGAT	1 cut(s)	1006
BsuI	GTATCC	1 cut(s)	972
BsuRI	GGCC	3 cut(s)	277, 629, 1013
BsuTUI	ATCGAT	1 cut(s)	1006
BtgI	CCRYGG	2 cut(s)	373, 630
BtsCI	GGATG	3 cut(s)	178, 793, 814
BtsIMutI	CAGTG	2 cut(s)	645, 1021
BtuMI	TCGCGA	1 cut(s)	623
Cac8I	GCNNGC	9 cut(s)	248, 258, 271, 275, 325, 451, 529, 533, 951
CaiI	CAGNNNCTG	2 cut(s)	396, 679
ClaI	ATCGAT	1 cut(s)	1006
Csp6I	GTAC	1 cut(s)	161
CspCI	CAANNNNNGTGG	4 cut(s)	771, 806, 942, 977
CviAII	CATG	4 cut(s)	75, 158, 595, 631
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	5 cut(s)	226, 702, 741, 930, 983
DpnI	GATC	5 cut(s)	687, 727, 798, 833, 990
DpnII	GATC	5 cut(s)	685, 725, 796, 831, 988
DraI	TTTAAA	1 cut(s)	910
EaeI	YGGCCR	1 cut(s)	627
Eam1104I	CTCTTC	5 cut(s)	116, 742, 743, 761, 810
EarI	CTCTTC	5 cut(s)	116, 742, 743, 761, 810
Eco130I	CCWWGG	1 cut(s)	630
Eco147I	AGGCCT	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	605
Eco47III	AGCGCT	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	656
Eco88I	CYCGRG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	630
EcoT38I	GRGCYC	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	4 cut(s)	78, 161, 598, 634
FaiI	YATR	9 cut(s)	36, 76, 159, 185, 587, 596, 632, 939, 972
FatI	CATG	4 cut(s)	74, 157, 594, 630
FauI	CCCGC	2 cut(s)	302, 341
Fnu4HI	GCNGC	9 cut(s)	244, 251, 254, 307, 338, 346, 397, 447, 570
FokI	GGATG	3 cut(s)	185, 800, 821
FriOI	GRGCYC	1 cut(s)	605
Fsp4HI	GCNGC	9 cut(s)	244, 251, 254, 307, 338, 346, 397, 447, 570
FspBI	CTAG	4 cut(s)	141, 380, 560, 918
FspI	TGCGCA	2 cut(s)	389, 400
GluI	GCNGC	9 cut(s)	244, 251, 254, 307, 338, 346, 397, 447, 570
GsaI	CCCAGC	2 cut(s)	475, 546
HaeII	RGCGCY	2 cut(s)	147, 193
HaeIII	GGCC	3 cut(s)	277, 629, 1013
HapII	CCGG	1 cut(s)	642
Hin1II	CATG	4 cut(s)	78, 161, 598, 634
HpaII	CCGG	1 cut(s)	642
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	2 cut(s)	708, 775
Hpy188I	TCNGA	7 cut(s)	7, 23, 90, 675, 742, 824, 933
Hpy188III	TCNNGA	2 cut(s)	118, 622
Hpy8I	GTNNAC	2 cut(s)	708, 775
Hpy99I	CGWCG	1 cut(s)	628
HpyAV	CCTTC	3 cut(s)	281, 680, 819
HpyCH4III	ACNGT	3 cut(s)	320, 374, 649
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	340, 355, 482, 782
HpyF3I	CTNAG	5 cut(s)	226, 702, 741, 930, 983
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	78, 161, 598, 634
Kzo9I	GATC	5 cut(s)	685, 725, 796, 831, 988
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	3 cut(s)	409, 468, 490
Lsp1109I	GCAGC	8 cut(s)	255, 262, 265, 293, 324, 332, 383, 458
LweI	GCATC	4 cut(s)	163, 356, 899, 905
MaeI	CTAG	4 cut(s)	141, 380, 560, 918
MaeII	ACGT	1 cut(s)	84
MalI	GATC	5 cut(s)	687, 727, 798, 833, 990
MboI	GATC	5 cut(s)	685, 725, 796, 831, 988
MfeI	CAATTG	1 cut(s)	801
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	5 cut(s)	211, 299, 421, 605, 931
MluCI	AATT	7 cut(s)	66, 93, 215, 573, 696, 717, 801
MnlI	CCTC	8 cut(s)	161, 323, 327, 662, 665, 668, 744, 917
MseI	TTAA	2 cut(s)	108, 909
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	1 cut(s)	642
MunI	CAATTG	1 cut(s)	801
Mva1269I	GAATGC	1 cut(s)	951
MvnI	CGCG	6 cut(s)	262, 325, 327, 463, 510, 623
NcoI	CCATGG	1 cut(s)	630
NdeII	GATC	5 cut(s)	685, 725, 796, 831, 988
NlaIII	CATG	4 cut(s)	78, 161, 598, 634
NlaIV	GGNNCC	1 cut(s)	798
NmeAIII	GCCGAG	1 cut(s)	535
NruI	TCGCGA	1 cut(s)	623
NsbI	TGCGCA	2 cut(s)	389, 400
PauI	GCGCGC	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	446
PctI	GAATGC	1 cut(s)	951
PflFI	GACNNNGTC	1 cut(s)	586
PkrI	GCNGC	9 cut(s)	245, 252, 255, 308, 339, 347, 398, 448, 571
PspFI	CCCAGC	2 cut(s)	471, 542
PspN4I	GGNNCC	1 cut(s)	798
PstI	CTGCAG	2 cut(s)	342, 484
PstNI	CAGNNNCTG	2 cut(s)	396, 679
PsuI	RGATCY	1 cut(s)	796
PsyI	GACNNNGTC	1 cut(s)	586
PteI	GCGCGC	1 cut(s)	323
RruI	TCGCGA	1 cut(s)	623
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
RseI	CAYNNNNRTG	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	108, 909
SatI	GCNGC	9 cut(s)	244, 251, 254, 307, 338, 346, 397, 447, 570
Sau3AI	GATC	5 cut(s)	685, 725, 796, 831, 988
SduI	GDGCHC	5 cut(s)	211, 299, 421, 605, 931
SetI	ASST	8 cut(s)	20, 87, 128, 138, 439, 473, 556, 928
SfaNI	GCATC	4 cut(s)	163, 356, 899, 905
SfcI	CTRYAG	3 cut(s)	238, 338, 480
SmiMI	CAYNNNNRTG	1 cut(s)	182
SpeI	ACTAGT	1 cut(s)	917
Sse9I	AATT	7 cut(s)	66, 93, 215, 573, 696, 717, 801
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	6 cut(s)	11, 284, 309, 327, 348, 569
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	4 cut(s)	141, 380, 560, 918
StuI	AGGCCT	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	3 cut(s)	320, 374, 649
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	1006
TasI	AATT	7 cut(s)	66, 93, 215, 573, 696, 717, 801
TatI	WGTACW	1 cut(s)	160
TauI	GCSGC	1 cut(s)	572
Tru1I	TTAA	2 cut(s)	108, 909
Tru9I	TTAA	2 cut(s)	108, 909
TscAI	CASTG	1 cut(s)	652
TseI	GCWGC	8 cut(s)	243, 250, 253, 306, 337, 345, 396, 446
TspDTI	ATGAA	3 cut(s)	184, 861, 989
TspRI	CASTG	1 cut(s)	652
Tth111I	GACNNNGTC	1 cut(s)	586
XapI	RAATTY	2 cut(s)	696, 717
XspI	CTAG	4 cut(s)	141, 380, 560, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.