Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004314

Physical Location & Seq

Genomic Coordinates Reverse (-)

2920652 .. 2922535

Gene Structure 1884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG037700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTCTTCCATGTTGGGCTCACAAGGCGTGGTCTTCGCGACGGCCATGGCTGTCTCCGGCACTGTCCTCCTCCTCGCTTTTCGCCTTCAGAAACTGGCAGATCACCACCAAATTTCTCAGTCCACTCCCAAAATTCTACGATCTTGTATCTCTTCTGATCAAACTACGTCGTTCAGTCCGCGTTGCCTTAGCTCCGTCCAAGCAAATCAATCTCCGCTTCTGCAGTCTCCGGCGAGAGGCCTTCAAGTTCTCCTCGCTCAGCCAATCCGACTCGCACCGCGTCCGGCTCTCGACGGCTTCGCGGTCCAAGAAGGTTTCGGCGGCCTTGTCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPI_Ypi1

Protein Analysis

111

Amino Acids

11.76

Weight (kDa)

10.73

Isoelectric Point (pI)

73.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52565 AT3G15760
fragaria_vesca	FvH4_1g03160 FvH4_6g29910
malus_domestica	MD02G1030600.v1.1 MD15G1172200.v1.1 MD17G1209300.v1.1
prunus_persica	Prupe.3G084900_v2.0.a1 Prupe.7G243900_v2.0.a1
pyrus_communis	pycom02g02550 pycom09g14090 pycom17g21500
rosa_chinensis	RchiOBHm_Chr2g0088291 RchiOBHm_Chr2g0135861
rosa_laevigata	RLG00000015939 RLG00000019488
rosa_multiflora	Rmu_sc0004235.1_g000039 Rmu_sc0007848.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108800 Rroxscaffold_2G00152770
rosa_rugosa	Rorug01G0482600 Rorug02G0326700
rosa_samantha	Rh2AG037700 Rh2AG378200 Rh2BG036900 Rh2BG384600 Rh2CG038000 Rh2CG364000 Rh2DG037400 Rh2DG401100
rosa_wichuraiana	Rw2G002970 Rw2G030810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	38, 181, 280, 302
AciI	CCGC	5 cut(s)	179, 215, 278, 302, 321
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	111, 132
AcuI	CTGAAG	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	245
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
Alw26I	GTCTC	2 cut(s)	58, 231
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	3 cut(s)	42, 238, 322
ApoI	RAATTY	2 cut(s)	111, 132
AspS9I	GGNCC	1 cut(s)	304
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	25
BceAI	ACGGC	2 cut(s)	57, 310
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	58, 231
BfmI	CTRYAG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	322
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BpiI	GAAGAC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	188
Bpu1102I	GCTNAGC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	2 cut(s)	131, 272
BseNI	ACTGG	1 cut(s)	99
BseRI	GAGGAG	3 cut(s)	59, 62, 242
Bsh1236I	CGCG	4 cut(s)	38, 181, 280, 302
BshFI	GGCC	3 cut(s)	44, 240, 324
BsiSI	CCGG	3 cut(s)	57, 230, 284
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	58, 231
BsnI	GGCC	3 cut(s)	44, 240, 324
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	100, 140, 157
Bsp1720I	GCTNAGC	1 cut(s)	258
Bsp19I	CCATGG	1 cut(s)	45
Bsp68I	TCGCGA	1 cut(s)	38
BspACI	CCGC	5 cut(s)	179, 215, 278, 302, 321
BspANI	GGCC	3 cut(s)	44, 240, 324
BspCNI	CTCAG	2 cut(s)	130, 271
BspFNI	CGCG	4 cut(s)	38, 181, 280, 302
BspMAI	CTGCAG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	3 cut(s)	100, 140, 157
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	117, 188, 258
BstDSI	CCRYGG	1 cut(s)	45
BstFNI	CGCG	4 cut(s)	38, 181, 280, 302
BstKTI	GATC	3 cut(s)	103, 143, 160
BstMAI	GTCTC	2 cut(s)	58, 231
BstMBI	GATC	3 cut(s)	100, 140, 157
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	221
BstUI	CGCG	4 cut(s)	38, 181, 280, 302
BstV2I	GAAGAC	1 cut(s)	25
BsuRI	GGCC	3 cut(s)	44, 240, 324
BtgI	CCRYGG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	60
BtuMI	TCGCGA	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	304
CseI	GACGC	1 cut(s)	269
CviAII	CATG	2 cut(s)	10, 46
CviJI	RGCY	9 cut(s)	18, 44, 50, 192, 240, 262, 287, 297, 324
CviKI_1	RGCY	9 cut(s)	18, 44, 50, 192, 240, 262, 287, 297, 324
DdeI	CTNAG	3 cut(s)	117, 188, 258
DpnI	GATC	3 cut(s)	102, 142, 159
DpnII	GATC	3 cut(s)	100, 140, 157
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	13, 49
FaiI	YATR	2 cut(s)	11, 47
FatI	CATG	2 cut(s)	9, 45
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	322
GluI	GCNGC	1 cut(s)	322
HaeIII	GGCC	3 cut(s)	44, 240, 324
HapII	CCGG	3 cut(s)	57, 230, 284
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	13, 49
HinfI	GANTC	1 cut(s)	270
HpaII	CCGG	3 cut(s)	57, 230, 284
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	3 cut(s)	90, 157, 269
Hpy188III	TCNNGA	2 cut(s)	37, 290
Hpy8I	GTNNAC	1 cut(s)	123
Hpy99I	CGWCG	3 cut(s)	43, 172, 296
HpyAV	CCTTC	3 cut(s)	95, 251, 305
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	3 cut(s)	117, 188, 258
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	13, 49
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	100, 140, 157
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	5 cut(s)	70, 80, 243, 297, 316
MaeII	ACGT	1 cut(s)	167
MalI	GATC	3 cut(s)	102, 142, 159
MboI	GATC	3 cut(s)	100, 140, 157
MboII	GAAGA	2 cut(s)	25, 144
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	2 cut(s)	111, 132
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	5 cut(s)	77, 80, 83, 230, 263
MspI	CCGG	3 cut(s)	57, 230, 284
MvnI	CGCG	4 cut(s)	38, 181, 280, 302
MwoI	GCNNNNNNNGC	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	100, 140, 157
NlaIII	CATG	2 cut(s)	13, 49
NruI	TCGCGA	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	323
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	225
PstNI	CAGNNNCTG	1 cut(s)	94
RruI	TCGCGA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	3 cut(s)	100, 140, 157
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	4 cut(s)	170, 194, 316, 335
SfcI	CTRYAG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	304
Sse9I	AATT	2 cut(s)	111, 132
SseBI	AGGCCT	1 cut(s)	240
SsiI	CCGC	5 cut(s)	179, 215, 278, 302, 321
StuI	AGGCCT	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	291
TasI	AATT	2 cut(s)	111, 132
TauI	GCSGC	1 cut(s)	324
TscAI	CASTG	1 cut(s)	67
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	2 cut(s)	111, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.