AT1G53645

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
20026016 .. 20028756
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53645.1

Sequence Viewer

Length: 1572 bp
ATGAGAAGTGCTATAGGAAGAAGATTCTCAAACCCTAATGGCTTCACCATTGCATCCTTAGTCAAACAAACTCCATTTCTCACCCAATCCACATCTCATTTCTCCTCTTCCTCCGACTCCTCCGGCCGTGGTCGTGGACGCGGTTCCGGTGAAGATGGAGGATTTCCCGCCGCTGGAAGAGGACAATTCGGTGTAAATCGTGAACCGGTGGTTCCTGGACGTGAACCGTCATCTGCCGGAGGTTATGGTCATGGTCGTGGTCGTCCGATCCAATCTGATTCGATTTCTCCTGCGTTTACGTCATTTGTCAAATCAGATTCTCCTAGTATTGGCCGTGGAAGAGGATCCGTTGGATCAGACACCGTTTCACCTTTCGCTGCTGAACCTCCTCGCCAATCGCCGCCTCCACCGCAGCAACAACAGTCTCAATCGCAGCAACAGCGTTCACAACCACAACAGCAGCAGCCGCGTTCGCAACCACAGCAGCAGCCTAATGATGAATCTCAGGGAAGTCCTGTATTTGTGAAGCTGCAGGAGATGCAGGACGCAACTTCGTCTCCACCACCACCAGAGTCTAAACCTGGTCAAGCTGATCCACCTGATAACATATTCAATGCATTAGGAAACGAATTTTCACATCCTAGTGGAGCAGGTCGAGGAAAGCCTCTTGTGGAATCTGCTCCAATCCGACAAGAAGATAACCGCCAAATTCGACGCCCTCCGCCTCCACCGCAGCAGCAGAGAGTACAACCTCAGCAGAAGCGGGCTCCAACGGTCAAAGATGGAACTCCTAAGCCGCAATTGAGTGCGGAAGAGGCTGGAAGAAGAGCAAGGAGTGAGCTTTCGCGTGGTGAAGCTGAAGGAAGCAGTGTGGGAGGAAGAGGAGGGAGAGGGAGAGGGAGAGGAAGAGGAGCAAGAGGGAGAGGCAGAGGAAGAGGTGGTGATGGATGGAGAGATGATAAGAAAGAAGAAGAAGGTGAACAAGAGGCTATGCGTATATTTGCTGGAGATTCAGCTGATGGAGAGAAGTTTGCTGAGAAAATGGGACCTGAATTGATGAAAACGCTTGCGGAAGGTTTTGAGGAAATTTGCGAAAAGGCGTTGCCTTCTACTACTCACGATGCCATTATAGATGCTTATGATACCAATCTCATGATTGAGTGTGAGCCTGAATACATTATGCCAGACTTTGGATCAAATCCTGACATTGATGAGAAACCACCAATGTCTCTGCGTGAGTGCCTTGAGAAGGTGAAGCCTTTCATAGTGGCTTACGAAGGAATCAAGGATCAAGAAGAATGGGAGGAAGCAATTAATGAAGCGATGACACAGGCTCCCCTTATGAAAGAGATTGTTGATCACTACAGTGGTCCTGATCGTGTAACTGCTAAGAAACAGAACGAGGAACTCGATAGAATTGCTACAACGCTTCCCGCAAGTGCACCTGATTCCGTGAAACGATTTGCAGATCGTGCAGCTCTTACTCTTAAGAGTAATCCAGGTTGGGGATTTGATAAGAAATACCAGTTCATGGACAAGCTCGTTTTAGAGGTGTCACAAAGCTACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

523

Amino Acids

56.92

Weight (kDa)

6.14

Isoelectric Point (pI)

66.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 641
AccB7I CCANNNNNTGG 2 cut(s) 1190, 1531
AccII CGCG 3 cut(s) 141, 469, 847
AclWI GGATC 7 cut(s) 262, 339, 352, 361, 587, 1201, 1296
AcoI YGGCCR 2 cut(s) 124, 331
AcsI RAATTY 3 cut(s) 629, 708, 1086
AcuI CTGAAG 1 cut(s) 879
AcyI GRCGYC 1 cut(s) 715
AfaI GTAC 1 cut(s) 747
AfiI CCNNNNNNNGG 6 cut(s) 173, 329, 1190, 1249, 1505, 1531
AflII CTTAAG 1 cut(s) 1487
AgeI ACCGGT 1 cut(s) 205
AgsI TTSAA 1 cut(s) 613
AjiI CACGTC 1 cut(s) 221
AjnI CCWGG 3 cut(s) 214, 580, 1498
AleI CACNNNNGTG 1 cut(s) 1365
AluBI AGCT 8 cut(s) 529, 590, 841, 857, 1016, 1478, 1540, 1563
AluI AGCT 8 cut(s) 529, 590, 841, 857, 1016, 1478, 1540, 1563
Alw21I GWGCWC 1 cut(s) 1444
Alw26I GTCTC 3 cut(s) 429, 561, 1233
Alw44I GTGCAC 1 cut(s) 1440
AlwI GGATC 7 cut(s) 262, 339, 352, 361, 587, 1201, 1296
AoxI GGCC 2 cut(s) 124, 331
ApaLI GTGCAC 1 cut(s) 1440
ApoI RAATTY 3 cut(s) 629, 708, 1086
AseI ATTAAT 1 cut(s) 1314
AsiGI ACCGGT 1 cut(s) 205
Asp700I GAANNNNTTC 1 cut(s) 1259
AspS9I GGNCC 2 cut(s) 1046, 1370
AsuHPI GGTGA 8 cut(s) 37, 73, 161, 360, 863, 953, 989, 1264
AvaII GGWCC 2 cut(s) 1046, 1370
BaeGI GKGCMC 1 cut(s) 1444
BamHI GGATCC 1 cut(s) 344
BanII GRGCYC 1 cut(s) 769
Bbv12I GWGCWC 1 cut(s) 1444
BbvCI CCTCAGC 1 cut(s) 753
BccI CCATC 5 cut(s) 149, 776, 938, 942, 1013
BceAI ACGGC 2 cut(s) 111, 318
BcgI CGANNNNNNTGC 2 cut(s) 1400, 1434
BciT130I CCWGG 3 cut(s) 216, 582, 1500
BclI TGATCA 1 cut(s) 1357
BcoDI GTCTC 3 cut(s) 429, 561, 1233
BfaI CTAG 2 cut(s) 324, 642
BfmI CTRYAG 3 cut(s) 12, 530, 1363
BfrI CTTAAG 1 cut(s) 1487
BfuAI ACCTGC 1 cut(s) 641
Bme1390I CCNGG 3 cut(s) 216, 582, 1500
Bme18I GGWCC 2 cut(s) 1046, 1370
BmgBI CACGTC 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 1046, 1370
BmiI GGNNCC 6 cut(s) 145, 213, 346, 768, 1047, 1335
BmrFI CCNGG 3 cut(s) 216, 582, 1500
BmsI GCATC 4 cut(s) 62, 528, 1111, 1123
BpmI CTGGAG 1 cut(s) 1026
Bpu10I CCTNAGC 2 cut(s) 753, 792
BpuEI CTTGAG 1 cut(s) 1265
BsaBI GATNNNNATC 1 cut(s) 1146
BsaHI GRCGYC 1 cut(s) 715
BsaJI CCNNGG 2 cut(s) 127, 334
BsaWI WCCGGW 2 cut(s) 146, 205
BsaXI ACNNNNNCTCC 4 cut(s) 541, 571, 1318, 1348
Bsc4I CCNNNNNNNGG 6 cut(s) 173, 329, 1190, 1249, 1505, 1531
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 1525
Bse3DI GCAATG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 1146
BseBI CCWGG 3 cut(s) 216, 582, 1500
BseDI CCNNGG 2 cut(s) 127, 334
BseGI GGATG 3 cut(s) 53, 637, 953
BseJI GATNNNNATC 1 cut(s) 1146
BseLI CCNNNNNNNGG 6 cut(s) 173, 329, 1190, 1249, 1505, 1531
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 3 cut(s) 518, 767, 1026
BseNI ACTGG 1 cut(s) 1525
BseRI GAGGAG 5 cut(s) 94, 109, 378, 897, 924
BseSI GKGCMC 1 cut(s) 1444
BseX3I CGGCCG 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 1494
Bsh1236I CGCG 3 cut(s) 141, 469, 847
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 2 cut(s) 126, 333
BshTI ACCGGT 1 cut(s) 205
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 1444
BsiSI CCGG 4 cut(s) 123, 147, 206, 237
BslFI GGGAC 1 cut(s) 1059
BslI CCNNNNNNNGG 6 cut(s) 173, 329, 1190, 1249, 1505, 1531
BsmAI GTCTC 3 cut(s) 429, 561, 1233
BsmBI CGTCTC 1 cut(s) 561
BsmFI GGGAC 1 cut(s) 1059
BsnI GGCC 2 cut(s) 126, 333
Bsp1286I GDGCHC 2 cut(s) 769, 1444
Bsp143I GATC 9 cut(s) 267, 344, 353, 592, 1193, 1288, 1357, 1375, 1468
BspANI GGCC 2 cut(s) 126, 333
BspCNI CTCAG 3 cut(s) 517, 766, 1027
BspFNI CGCG 3 cut(s) 141, 469, 847
BspHI TCATGA 1 cut(s) 1152
BspLI GGNNCC 6 cut(s) 145, 213, 346, 768, 1047, 1335
BspMAI CTGCAG 1 cut(s) 534
BspMI ACCTGC 1 cut(s) 641
BspPI GGATC 7 cut(s) 262, 339, 352, 361, 587, 1201, 1296
BspQI GCTCTTC 1 cut(s) 820
BspTI CTTAAG 1 cut(s) 1487
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 205
BsrI ACTGG 1 cut(s) 1525
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 127, 334
BssMI GATC 9 cut(s) 267, 344, 353, 592, 1193, 1288, 1357, 1375, 1468
BssNI GRCGYC 1 cut(s) 715
Bst2UI CCWGG 3 cut(s) 216, 582, 1500
Bst4CI ACNGT 5 cut(s) 228, 364, 423, 775, 1367
Bst6I CTCTTC 8 cut(s) 112, 172, 334, 807, 820, 874, 901, 928
BstACI GRCGYC 1 cut(s) 715
BstAFI CTTAAG 1 cut(s) 1487
BstAPI GCANNNNNTGC 2 cut(s) 538, 1472
BstC8I GCNNGC 2 cut(s) 765, 1068
BstDEI CTNAG 6 cut(s) 58, 504, 753, 792, 1035, 1389
BstDSI CCRYGG 2 cut(s) 127, 334
BstENI CCTNNNNNAGG 1 cut(s) 1247
BstF5I GGATG 3 cut(s) 53, 637, 953
BstFNI CGCG 3 cut(s) 141, 469, 847
BstKTI GATC 9 cut(s) 270, 347, 356, 595, 1196, 1291, 1360, 1378, 1471
BstMAI GTCTC 3 cut(s) 429, 561, 1233
BstMBI GATC 9 cut(s) 267, 344, 353, 592, 1193, 1288, 1357, 1375, 1468
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 9 cut(s) 409, 439, 466, 472, 481, 538, 730, 815, 1472
BstNI CCWGG 3 cut(s) 216, 582, 1500
BstSCI CCNGG 3 cut(s) 214, 580, 1498
BstSFI CTRYAG 3 cut(s) 12, 530, 1363
BstSLI GKGCMC 1 cut(s) 1444
BstUI CGCG 3 cut(s) 141, 469, 847
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BstZI CGGCCG 1 cut(s) 124
BsuRI GGCC 2 cut(s) 126, 333
BtgI CCRYGG 2 cut(s) 127, 334
BtgZI GCGATG 1 cut(s) 1337
BtrI CACGTC 1 cut(s) 221
BtsCI GGATG 3 cut(s) 53, 637, 953
BtsI GCAGTG 1 cut(s) 874
BtsIMutI CAGTG 2 cut(s) 874, 1372
BveI ACCTGC 1 cut(s) 641
Cac8I GCNNGC 2 cut(s) 765, 1068
CciI TCATGA 1 cut(s) 1152
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 1046, 1370
CseI GACGC 3 cut(s) 147, 554, 723
CsiI ACCWGGT 1 cut(s) 580
Csp6I GTAC 1 cut(s) 746
CspAI ACCGGT 1 cut(s) 205
CviAII CATG 3 cut(s) 251, 1153, 1531
CviQI GTAC 1 cut(s) 746
DdeI CTNAG 6 cut(s) 58, 504, 753, 792, 1035, 1389
DpnI GATC 9 cut(s) 269, 346, 355, 594, 1195, 1290, 1359, 1377, 1470
DpnII GATC 9 cut(s) 267, 344, 353, 592, 1193, 1288, 1357, 1375, 1468
EaeI YGGCCR 2 cut(s) 124, 331
EagI CGGCCG 1 cut(s) 124
Eam1104I CTCTTC 8 cut(s) 112, 172, 334, 807, 820, 874, 901, 928
EarI CTCTTC 8 cut(s) 112, 172, 334, 807, 820, 874, 901, 928
EciI GGCGGA 1 cut(s) 711
EclXI CGGCCG 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 769
Eco47I GGWCC 2 cut(s) 1046, 1370
Eco52I CGGCCG 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 879
EcoNI CCTNNNNNAGG 1 cut(s) 1247
EcoO109I RGGNCCY 1 cut(s) 1046
EcoRII CCWGG 3 cut(s) 214, 580, 1498
EcoT22I ATGCAT 1 cut(s) 619
EcoT38I GRGCYC 1 cut(s) 769
Esp3I CGTCTC 1 cut(s) 561
FaeI CATG 3 cut(s) 254, 1156, 1534
FaqI GGGAC 1 cut(s) 1059
FatI CATG 3 cut(s) 250, 1152, 1530
FauI CCCGC 3 cut(s) 175, 756, 1441
FbaI TGATCA 1 cut(s) 1357
FokI GGATG 3 cut(s) 40, 624, 960
FriOI GRGCYC 1 cut(s) 769
FspBI CTAG 2 cut(s) 324, 642
GsuI CTGGAG 1 cut(s) 1026
HaeIII GGCC 2 cut(s) 126, 333
HapII CCGG 4 cut(s) 123, 147, 206, 237
HgaI GACGC 3 cut(s) 147, 554, 723
Hin1I GRCGYC 1 cut(s) 715
Hin1II CATG 3 cut(s) 254, 1156, 1534
HpaII CCGG 4 cut(s) 123, 147, 206, 237
HphI GGTGA 8 cut(s) 37, 73, 161, 360, 863, 953, 989, 1264
Hpy166II GTNNAC 7 cut(s) 137, 203, 224, 297, 446, 980, 1442
Hpy188I TCNGA 6 cut(s) 115, 267, 277, 316, 358, 689
Hpy188III TCNNGA 6 cut(s) 200, 1118, 1153, 1202, 1292, 1373
Hpy8I GTNNAC 7 cut(s) 137, 203, 224, 297, 446, 980, 1442
Hpy99I CGWCG 1 cut(s) 717
HpyAV CCTTC 6 cut(s) 854, 968, 1067, 1116, 1243, 1271
HpyCH4III ACNGT 5 cut(s) 228, 364, 423, 775, 1367
HpyCH4IV ACGT 2 cut(s) 220, 299
HpyCH4V TGCA 7 cut(s) 53, 532, 541, 617, 1442, 1466, 1475
HpyF10VI GCNNNNNNNGC 9 cut(s) 409, 439, 466, 472, 481, 538, 730, 815, 1472
HpyF3I CTNAG 6 cut(s) 58, 504, 753, 792, 1035, 1389
HpySE526I ACGT 2 cut(s) 220, 299
Hsp92I GRCGYC 1 cut(s) 715
Hsp92II CATG 3 cut(s) 254, 1156, 1534
Ksp22I TGATCA 1 cut(s) 1357
Kzo9I GATC 9 cut(s) 267, 344, 353, 592, 1193, 1288, 1357, 1375, 1468
LguI GCTCTTC 1 cut(s) 820
LmnI GCTCC 5 cut(s) 647, 685, 772, 911, 1339
LweI GCATC 4 cut(s) 62, 528, 1111, 1123
MabI ACCWGGT 1 cut(s) 580
MaeI CTAG 2 cut(s) 324, 642
MaeII ACGT 2 cut(s) 220, 299
MaeIII GTNAC 2 cut(s) 1381, 1554
MalI GATC 9 cut(s) 269, 346, 355, 594, 1195, 1290, 1359, 1377, 1470
MboI GATC 9 cut(s) 267, 344, 353, 592, 1193, 1288, 1357, 1375, 1468
MfeI CAATTG 1 cut(s) 800
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 2 cut(s) 769, 1444
MluCI AATT 8 cut(s) 185, 629, 708, 800, 1052, 1086, 1311, 1416
MlyI GAGTC 2 cut(s) 110, 581
MmeI TCCRAC 4 cut(s) 138, 331, 712, 794
Mph1103I ATGCAT 1 cut(s) 619
MroXI GAANNNNTTC 1 cut(s) 1259
MseI TTAA 2 cut(s) 1314, 1488
MslI CAYNNNNRTG 3 cut(s) 255, 642, 1365
MspA1I CMGCKG 2 cut(s) 173, 1016
MspCI CTTAAG 1 cut(s) 1487
MspI CCGG 4 cut(s) 123, 147, 206, 237
MspR9I CCNGG 3 cut(s) 216, 582, 1500
MunI CAATTG 1 cut(s) 800
MvaI CCWGG 3 cut(s) 216, 582, 1500
MvnI CGCG 3 cut(s) 141, 469, 847
MwoI GCNNNNNNNGC 9 cut(s) 409, 439, 466, 472, 481, 538, 730, 815, 1472
NdeII GATC 9 cut(s) 267, 344, 353, 592, 1193, 1288, 1357, 1375, 1468
NlaIII CATG 3 cut(s) 254, 1156, 1534
NlaIV GGNNCC 6 cut(s) 145, 213, 346, 768, 1047, 1335
NmuCI GTSAC 1 cut(s) 1554
NsiI ATGCAT 1 cut(s) 619
OliI CACNNNNGTG 1 cut(s) 1365
PagI TCATGA 1 cut(s) 1152
PciSI GCTCTTC 1 cut(s) 820
PcsI WCGNNNNNNNCGW 1 cut(s) 1407
PdmI GAANNNNTTC 1 cut(s) 1259
PfeI GAWTC 8 cut(s) 24, 278, 317, 500, 674, 1010, 1281, 1448
PflMI CCANNNNNTGG 2 cut(s) 1190, 1531
PfoI TCCNGGA 1 cut(s) 214
PinAI ACCGGT 1 cut(s) 205
PleI GAGTC 2 cut(s) 110, 580
PpsI GAGTC 2 cut(s) 110, 580
PpuMI RGGWCCY 1 cut(s) 1046
PshBI ATTAAT 1 cut(s) 1314
Psp5II RGGWCCY 1 cut(s) 1046
Psp6I CCWGG 3 cut(s) 214, 580, 1498
PspGI CCWGG 3 cut(s) 214, 580, 1498
PspN4I GGNNCC 6 cut(s) 145, 213, 346, 768, 1047, 1335
PspPI GGNCC 2 cut(s) 1046, 1370
PspPPI RGGWCCY 1 cut(s) 1046
PstI CTGCAG 1 cut(s) 534
PsuI RGATCY 1 cut(s) 344
PvuII CAGCTG 1 cut(s) 1016
RsaI GTAC 1 cut(s) 747
RsaNI GTAC 1 cut(s) 746
RseI CAYNNNNRTG 3 cut(s) 255, 642, 1365
SapI GCTCTTC 1 cut(s) 820
SaqAI TTAA 2 cut(s) 1314, 1488
Sau3AI GATC 9 cut(s) 267, 344, 353, 592, 1193, 1288, 1357, 1375, 1468
Sau96I GGNCC 2 cut(s) 1046, 1370
SchI GAGTC 2 cut(s) 110, 581
ScrFI CCNGG 3 cut(s) 216, 582, 1500
SduI GDGCHC 2 cut(s) 769, 1444
SexAI ACCWGGT 1 cut(s) 580
SfaNI GCATC 4 cut(s) 62, 528, 1111, 1123
SfcI CTRYAG 3 cut(s) 12, 530, 1363
SinI GGWCC 2 cut(s) 1046, 1370
SmiMI CAYNNNNRTG 3 cut(s) 255, 642, 1365
SmlI CTYRAG 2 cut(s) 1244, 1487
SmoI CTYRAG 2 cut(s) 1244, 1487
Sse9I AATT 8 cut(s) 185, 629, 708, 800, 1052, 1086, 1311, 1416
SspMI CTAG 2 cut(s) 324, 642
StyD4I CCNGG 3 cut(s) 214, 580, 1498
TaaI ACNGT 5 cut(s) 228, 364, 423, 775, 1367
TaiI ACGT 2 cut(s) 223, 302
TaqI TCGA 4 cut(s) 281, 655, 712, 1410
TasI AATT 8 cut(s) 185, 629, 708, 800, 1052, 1086, 1311, 1416
TatI WGTACW 1 cut(s) 745
TauI GCSGC 4 cut(s) 173, 403, 469, 799
TfiI GAWTC 8 cut(s) 24, 278, 317, 500, 674, 1010, 1281, 1448
Tru1I TTAA 2 cut(s) 1314, 1488
Tru9I TTAA 2 cut(s) 1314, 1488
TscAI CASTG 2 cut(s) 874, 1372
TseFI GTSAC 1 cut(s) 1554
Tsp45I GTSAC 1 cut(s) 1554
TspDTI ATGAA 6 cut(s) 513, 1073, 1252, 1332, 1358, 1519
TspGWI ACGGA 2 cut(s) 337, 1441
TspRI CASTG 2 cut(s) 874, 1372
Van91I CCANNNNNTGG 2 cut(s) 1190, 1531
Vha464I CTTAAG 1 cut(s) 1487
VneI GTGCAC 1 cut(s) 1440
VpaK11BI GGWCC 2 cut(s) 1046, 1370
VspI ATTAAT 1 cut(s) 1314
XagI CCTNNNNNAGG 1 cut(s) 1247
XapI RAATTY 3 cut(s) 629, 708, 1086
XmnI GAANNNNTTC 1 cut(s) 1259
XspI CTAG 2 cut(s) 324, 642
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.