Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011343.1

Orthogroup ID

OG0007722

Physical Location & Seq

Genomic Coordinates Forward (+)

6203 .. 8165

Gene Structure 1963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011343.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgattggacctaatctatgtatcactgtgctacttccacaaactctttatctaccccatgatgacaaaccctactcccgttttccacttcctccaacagcggcggcggctccttctctcttcaactacctcgccgaccagttcccgcctcaaccagactccaaatccgactggcccccacctctcccgggagccggccacggccgcggcaaacccttatcccaacctccgccttcctttgcctcggggatcaaacctagttcggccgccggtcggggccatccgggtcacgtgcagcccccgtcagagtcacgtgagggagatgattcgggtttacccaaaaagcccgtgttcttcagacgggaagatgcggaggagaatctaccggccggtttgatgacggcgttgggcggaacgggtcgggggaggcccatagtgtggaggagaatgggcagattggggttccggtggagcccaggaagccgaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.53

Weight (kDa)

9.9

Isoelectric Point (pI)

61.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53645
fragaria_vesca	FvH4_3g14000 FvH4_3g14000
malus_domestica	MD05G1239100.v1.1 MD10G1217100.v1.1
prunus_persica	Prupe.4G127000_v2.0.a1
pyrus_communis	pycom05g21540 pycom10g18320
rosa_chinensis	RchiOBHm_Chr5g0023231 RchiOBHm_Chr5g0023281
rosa_laevigata	RLG00000032711
rosa_multiflora	Rmu_sc0002343.1_g000043 Rmu_sc0009954.1_g000001 Rmu_sc0009954.1_g000004 Rmu_sc0011343.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056100
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164300 Rh5BG163800 Rh5CG179000 Rh5DG165600 Rh5DG266700
rosa_wichuraiana	Rw5G014840 Rw7G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccII	CGCG	1 cut(s)	207
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	4 cut(s)	196, 202, 264, 387
AcuI	CTGAAG	1 cut(s)	340
AcvI	CACGTG	2 cut(s)	292, 314
AfiI	CCNNNNNNNGG	4 cut(s)	188, 194, 273, 438
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	475
AlwI	GGATC	1 cut(s)	257
Ama87I	CYCGRG	2 cut(s)	187, 244
AoxI	GGCC	7 cut(s)	173, 196, 202, 264, 277, 387, 428
ApeKI	GCWGC	1 cut(s)	295
AspS9I	GGNCC	4 cut(s)	8, 174, 277, 429
AsuC2I	CCSGG	3 cut(s)	188, 189, 285
AvaI	CYCGRG	2 cut(s)	187, 244
AvaII	GGWCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	476
BbrPI	CACGTG	2 cut(s)	292, 314
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	1 cut(s)	288
BceAI	ACGGC	2 cut(s)	217, 417
BciT130I	CCWGG	1 cut(s)	477
BcnI	CCSGG	3 cut(s)	188, 189, 285
BfaI	CTAG	1 cut(s)	258
BisI	GCNGC	7 cut(s)	102, 105, 108, 205, 208, 267, 296
BlsI	GCNGC	7 cut(s)	103, 106, 109, 206, 209, 268, 297
Bme1390I	CCNGG	4 cut(s)	188, 189, 285, 477
Bme18I	GGWCC	1 cut(s)	8
BmeT110I	CYCGRG	2 cut(s)	187, 244
BmgT120I	GGNCC	4 cut(s)	8, 174, 277, 429
BmiI	GGNNCC	6 cut(s)	111, 176, 193, 278, 464, 473
BmrFI	CCNGG	4 cut(s)	188, 189, 285, 477
BmsI	GCATC	1 cut(s)	358
BpuMI	CCSGG	3 cut(s)	188, 189, 285
BsaAI	YACGTR	2 cut(s)	292, 314
BsaJI	CCNNGG	5 cut(s)	187, 199, 205, 243, 475
BsaWI	WCCGGW	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 194, 273, 438
Bse118I	RCCGGY	4 cut(s)	194, 269, 385, 389
Bse1I	ACTGG	2 cut(s)	139, 176
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	5 cut(s)	187, 199, 205, 243, 475
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	4 cut(s)	188, 194, 273, 438
BseNI	ACTGG	2 cut(s)	139, 176
BseRI	GAGGAG	2 cut(s)	389, 457
BseX3I	CGGCCG	3 cut(s)	202, 264, 387
BseXI	GCAGC	1 cut(s)	307
BsgI	GTGCAG	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	4 cut(s)	205, 267, 274, 390
BshFI	GGCC	7 cut(s)	175, 198, 204, 266, 279, 389, 430
BsiEI	CGRYCG	4 cut(s)	205, 267, 274, 390
BsiHKCI	CYCGRG	2 cut(s)	187, 244
BsiSI	CCGG	7 cut(s)	188, 195, 270, 284, 386, 390, 466
BslI	CCNNNNNNNGG	4 cut(s)	188, 194, 273, 438
BsnI	GGCC	7 cut(s)	175, 198, 204, 266, 279, 389, 430
BsoBI	CYCGRG	2 cut(s)	187, 244
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	1 cut(s)	249
BspANI	GGCC	7 cut(s)	175, 198, 204, 266, 279, 389, 430
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	6 cut(s)	111, 176, 193, 278, 464, 473
BspPI	GGATC	1 cut(s)	257
BsrFI	RCCGGY	4 cut(s)	194, 269, 385, 389
BsrI	ACTGG	2 cut(s)	139, 176
BssAI	RCCGGY	4 cut(s)	194, 269, 385, 389
BssECI	CCNNGG	5 cut(s)	187, 199, 205, 243, 475
BssMI	GATC	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	125
BstBAI	YACGTR	2 cut(s)	292, 314
BstC8I	GCNNGC	1 cut(s)	196
BstDSI	CCRYGG	2 cut(s)	199, 205
BstF5I	GGATG	1 cut(s)	280
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	249
BstMCI	CGRYCG	4 cut(s)	205, 267, 274, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 204, 480
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	4 cut(s)	186, 187, 283, 475
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	307
BstZI	CGGCCG	3 cut(s)	202, 264, 387
BsuRI	GGCC	7 cut(s)	175, 198, 204, 266, 279, 389, 430
BtgI	CCRYGG	2 cut(s)	199, 205
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	196
Cfr10I	RCCGGY	4 cut(s)	194, 269, 385, 389
Cfr13I	GGNCC	4 cut(s)	8, 174, 277, 429
Cfr42I	CCGCGG	1 cut(s)	208
Cfr9I	CCCGGG	1 cut(s)	187
CviAII	CATG	1 cut(s)	59
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
EaeI	YGGCCR	4 cut(s)	196, 202, 264, 387
EagI	CGGCCG	3 cut(s)	202, 264, 387
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	2 cut(s)	219, 426
EclXI	CGGCCG	3 cut(s)	202, 264, 387
Eco24I	GRGCYC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	8
Eco52I	CGGCCG	3 cut(s)	202, 264, 387
Eco57I	CTGAAG	1 cut(s)	340
Eco72I	CACGTG	2 cut(s)	292, 314
Eco88I	CYCGRG	2 cut(s)	187, 244
EcoRII	CCWGG	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	476
FaeI	CATG	1 cut(s)	62
FaiI	YATR	3 cut(s)	19, 60, 434
FatI	CATG	1 cut(s)	58
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	7 cut(s)	102, 105, 108, 205, 208, 267, 296
FokI	GGATG	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	7 cut(s)	102, 105, 108, 205, 208, 267, 296
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	7 cut(s)	102, 105, 108, 205, 208, 267, 296
HaeIII	GGCC	7 cut(s)	175, 198, 204, 266, 279, 389, 430
HapII	CCGG	7 cut(s)	188, 195, 270, 284, 386, 390, 466
Hin1II	CATG	1 cut(s)	62
HinfI	GANTC	4 cut(s)	158, 308, 326, 379
HpaII	CCGG	7 cut(s)	188, 195, 270, 284, 386, 390, 466
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	3 cut(s)	169, 307, 359
Hpy8I	GTNNAC	1 cut(s)	335
HpyAV	CCTTC	2 cut(s)	123, 243
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	2 cut(s)	291, 313
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 204, 480
HpySE526I	ACGT	2 cut(s)	291, 313
Hsp92II	CATG	1 cut(s)	62
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
KspI	CCGCGG	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	3 cut(s)	115, 191, 471
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	2 cut(s)	291, 313
MaeIII	GTNAC	2 cut(s)	287, 309
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	3 cut(s)	112, 346, 377
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	1 cut(s)	487
MlyI	GAGTC	2 cut(s)	152, 317
MmeI	TCCRAC	2 cut(s)	119, 192
MroNI	GCCGGC	1 cut(s)	194
MspA1I	CMGCKG	2 cut(s)	101, 207
MspI	CCGG	7 cut(s)	188, 195, 270, 284, 386, 390, 466
MspR9I	CCNGG	4 cut(s)	188, 189, 285, 477
MvaI	CCWGG	1 cut(s)	477
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	107, 204, 480
NaeI	GCCGGC	1 cut(s)	196
NciI	CCSGG	3 cut(s)	188, 189, 285
NdeII	GATC	1 cut(s)	249
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	6 cut(s)	111, 176, 193, 278, 464, 473
NmuCI	GTSAC	2 cut(s)	287, 309
PdiI	GCCGGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	326, 379
PflMI	CCANNNNNTGG	1 cut(s)	438
PkrI	GCNGC	7 cut(s)	103, 106, 109, 206, 209, 268, 297
PleI	GAGTC	2 cut(s)	152, 316
PmaCI	CACGTG	2 cut(s)	292, 314
PmlI	CACGTG	2 cut(s)	292, 314
PpsI	GAGTC	2 cut(s)	152, 316
Ppu21I	YACGTR	2 cut(s)	292, 314
Psp6I	CCWGG	1 cut(s)	475
PspCI	CACGTG	2 cut(s)	292, 314
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	6 cut(s)	111, 176, 193, 278, 464, 473
PspPI	GGNCC	4 cut(s)	8, 174, 277, 429
SacII	CCGCGG	1 cut(s)	208
SatI	GCNGC	7 cut(s)	102, 105, 108, 205, 208, 267, 296
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	4 cut(s)	8, 174, 277, 429
SchI	GAGTC	2 cut(s)	152, 317
ScrFI	CCNGG	4 cut(s)	188, 189, 285, 477
SduI	GDGCHC	1 cut(s)	476
SetI	ASST	7 cut(s)	13, 132, 184, 229, 259, 294, 316
SfaNI	GCATC	1 cut(s)	358
Sfr303I	CCGCGG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	8
SmaI	CCCGGG	1 cut(s)	189
Sse9I	AATT	1 cut(s)	487
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	4 cut(s)	186, 187, 283, 475
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	2 cut(s)	294, 316
TasI	AATT	1 cut(s)	487
TauI	GCSGC	6 cut(s)	104, 107, 110, 207, 210, 269
TfiI	GAWTC	2 cut(s)	326, 379
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	287, 309
TseI	GCWGC	1 cut(s)	295
Tsp45I	GTSAC	2 cut(s)	287, 309
TspMI	CCCGGG	1 cut(s)	187
TspRI	CASTG	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	8
XmaI	CCCGGG	1 cut(s)	187
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.