Rh5BG163800

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0007722
Physical Location & Seq
Forward (+)
17078497 .. 17082680
4184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG163800.1

Sequence Viewer

Length: 1374 bp
ATGAGAGGAGGAAGCGCCATAGGAATCGGCAGAAAGCTCGCGAACCCATCAAGCTTCTCCATTTCCAGACAAACCCTACTCCCGTTTTCCACTTCCTCCAACAGCGGCGGCGGCGGCGGTGGCCGAGGTCGCGGCCGCGGCGGCCCAACTCCCACCGCTCCTTCTCTCTTCAACTACCTCGCCGACCAGTTCCCTCCTCAACCCGACTCCGAATCCGACCCGCCCGCACCTCTCCCCGCTGCCGGCCACGGCCGCGGCAAACCTTTATCCCAACCTCCGCCTTCCTTCGCCTCGGGGATCAAACCCGGTTCGTCCGCCGGTCGGGGAGGCTCGGGTCACGTGCAGCCCCCGGCCGAGTCACGTGAGGGAGATGATTCGGGTTTAGCCAAGAAGCCTGTTTTCTTCAGACGGGAAGATGCGGAGGAGAATCTACCGGCGGGTTTGATGACGGCGTTGGGCGGAACCGGGCGGGGGAGGCCCATTTCGGGCCCGGCGGCCCAAAGTGTGGAGGAGAATCGGCAGATTGGGGCTCCGGTGGAGCCCAAGAGGGAGCCCCGGAAGCCGAAATTGACCCGGGAGGAGGCGGTGAAGCAAGCAATGGGGATATTGCAGCAGGGAGGCGGTGAGGGAGCGGAGGTTGATGGTGGTGGCGGTGGTGGCGGAAGAGGGAGAGGAGGAGAGAGAGGGATGAGAGGGAGAGGAGGAGGAAGAGGGAGAGGGAGAGGAGGGAGGGGAAGGAGAGAAGGAGAAGGAGATAGGAGAAGGCAAGGGGATGGGGATGGCGGCATTGCGCCGGGGCTTTATCTTGGGGACAATGCCGATGGGGAGAAGCTGGCTAAGAGGCTTGGCCCCGAAGTTATGAATCAGTTGACTGAAGCATTTGAGGATATGAGTAATCAAGTGCTTCCGTCGCCTTTGGATGATGCTTATGTCGACGCATTGGATACCAATTGTATGATTGAGTTTGAGCCGGAGTATCTTATGGGGGAGTTTAATCAAAACCCAGATATTGATGAAAAACCGCCTATTCCTCTCAGGGATGCACTTGAGAAGATGAAGCCTTTCTTGATGGCATATGAGGGTATTCAAAGTCAAGAGGAGTGGGAGGAAGCCATGAAGGAGACAATGGAAAGAGTTCCATTGTTGAAGGAAATTGTCGATCAGTACAGCGGACCAGATAGGGTAACTGCAAAGAAACAACAAGAAGAGTTAGAAAGAGTTGCAAAAACTCTTCCTGCAAAAGTACCTGATTCTGTAAAGCAGTTCACTGATCGCGTGGTGCTTTCTCTCCAGGGCAACCCTGGCTGGGGATTTCACAGGAAATGCCAGTTCATGGATAAGCTAACGGAAAAGGTTTCCAAGCACTACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

457

Amino Acids

48.76

Weight (kDa)

6.96

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 505, 1333
AccBSI CCGCTC 2 cut(s) 158, 632
AccI GTMKAC 1 cut(s) 933
AccII CGCG 5 cut(s) 41, 132, 138, 255, 1275
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 5 cut(s) 121, 133, 244, 250, 351
AcuI CTGAAG 2 cut(s) 388, 894
AcvI CACGTG 2 cut(s) 340, 362
AfaI GTAC 2 cut(s) 1166, 1245
AfiI CCNNNNNNNGG 9 cut(s) 242, 321, 471, 485, 505, 580, 1306, 1307, 1333
AgsI TTSAA 3 cut(s) 172, 1088, 1147
AjnI CCWGG 2 cut(s) 1290, 1300
AluBI AGCT 4 cut(s) 37, 54, 832, 1342
AluI AGCT 4 cut(s) 37, 54, 832, 1342
Alw26I GTCTC 1 cut(s) 1115
AlwI GGATC 1 cut(s) 305
Ama87I CYCGRG 3 cut(s) 292, 331, 573
ApaI GGGCCC 1 cut(s) 491
ApeKI GCWGC 3 cut(s) 239, 343, 610
Asp700I GAANNNNTTC 2 cut(s) 1061, 1134
AspLEI GCGC 2 cut(s) 17, 793
AspS9I GGNCC 7 cut(s) 143, 477, 487, 488, 496, 848, 1172
AsuC2I CCSGG 8 cut(s) 306, 350, 466, 491, 556, 574, 575, 795
AsuHPI GGTGA 2 cut(s) 598, 635
AvaI CYCGRG 3 cut(s) 292, 331, 573
AvaII GGWCC 1 cut(s) 1172
BaeGI GKGCMC 1 cut(s) 491
BanII GRGCYC 4 cut(s) 491, 532, 543, 555
BbrPI CACGTG 2 cut(s) 340, 362
BbvI GCAGC 3 cut(s) 226, 355, 622
BccI CCATC 6 cut(s) 55, 635, 767, 773, 815, 1063
BceAI ACGGC 2 cut(s) 265, 465
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 2 cut(s) 1292, 1302
BciVI GTATCC 1 cut(s) 937
BcnI CCSGG 8 cut(s) 306, 350, 466, 491, 556, 574, 575, 795
BcoDI GTCTC 1 cut(s) 1115
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 1 cut(s) 937
BglI GCCNNNNNGGC 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 1172
BmeT110I CYCGRG 3 cut(s) 292, 331, 573
BmgT120I GGNCC 7 cut(s) 143, 477, 487, 488, 496, 848, 1172
BmiI GGNNCC 6 cut(s) 463, 489, 531, 540, 552, 850
BmsI GCATC 3 cut(s) 406, 913, 1030
BpmI CTGGAG 1 cut(s) 1274
BpuEI CTTGAG 1 cut(s) 1067
BpuMI CCSGG 8 cut(s) 306, 350, 466, 491, 556, 574, 575, 795
BsaAI YACGTR 2 cut(s) 340, 362
BsaWI WCCGGW 1 cut(s) 532
BsaXI ACNNNNNCTCC 2 cut(s) 621, 651
Bsc4I CCNNNNNNNGG 9 cut(s) 242, 321, 471, 485, 505, 580, 1306, 1307, 1333
Bse118I RCCGGY 3 cut(s) 242, 317, 433
Bse1I ACTGG 2 cut(s) 187, 1327
Bse3DI GCAATG 2 cut(s) 603, 786
BseBI CCWGG 2 cut(s) 1292, 1302
BseGI GGATG 5 cut(s) 693, 778, 784, 925, 1045
BseLI CCNNNNNNNGG 9 cut(s) 242, 321, 471, 485, 505, 580, 1306, 1307, 1333
BseMI GCAATG 2 cut(s) 603, 786
BseMII CTCAG 1 cut(s) 1048
BseNI ACTGG 2 cut(s) 187, 1327
BseSI GKGCMC 1 cut(s) 491
BseX3I CGGCCG 3 cut(s) 133, 250, 351
BseXI GCAGC 3 cut(s) 226, 355, 622
BseYI CCCAGC 1 cut(s) 1305
BsgI GTGCAG 1 cut(s) 362
Bsh1236I CGCG 5 cut(s) 41, 132, 138, 255, 1275
Bsh1285I CGRYCG 4 cut(s) 136, 253, 322, 354
BsiEI CGRYCG 4 cut(s) 136, 253, 322, 354
BsiHKCI CYCGRG 3 cut(s) 292, 331, 573
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 9 cut(s) 242, 321, 471, 485, 505, 580, 1306, 1307, 1333
BsmAI GTCTC 1 cut(s) 1115
BsmFI GGGAC 1 cut(s) 824
BsoBI CYCGRG 3 cut(s) 292, 331, 573
Bsp120I GGGCCC 1 cut(s) 487
Bsp1286I GDGCHC 4 cut(s) 491, 532, 543, 555
Bsp143I GATC 3 cut(s) 297, 1159, 1270
Bsp68I TCGCGA 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 1047
BspFNI CGCG 5 cut(s) 41, 132, 138, 255, 1275
BspLI GGNNCC 6 cut(s) 463, 489, 531, 540, 552, 850
BspPI GGATC 1 cut(s) 305
BsrBI CCGCTC 2 cut(s) 158, 632
BsrDI GCAATG 2 cut(s) 603, 786
BsrFI RCCGGY 3 cut(s) 242, 317, 433
BsrI ACTGG 2 cut(s) 187, 1327
BssAI RCCGGY 3 cut(s) 242, 317, 433
BssMI GATC 3 cut(s) 297, 1159, 1270
Bst2UI CCWGG 2 cut(s) 1292, 1302
Bst6I CTCTTC 5 cut(s) 173, 658, 703, 1200, 1236
BstBAI YACGTR 2 cut(s) 340, 362
BstC8I GCNNGC 5 cut(s) 39, 225, 244, 594, 834
BstDEI CTNAG 2 cut(s) 837, 1034
BstDSI CCRYGG 3 cut(s) 136, 247, 253
BstF5I GGATG 5 cut(s) 693, 778, 784, 925, 1045
BstFNI CGCG 5 cut(s) 41, 132, 138, 255, 1275
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 793
BstKTI GATC 3 cut(s) 300, 1162, 1273
BstMAI GTCTC 1 cut(s) 1115
BstMBI GATC 3 cut(s) 297, 1159, 1270
BstMCI CGRYCG 4 cut(s) 136, 253, 322, 354
BstNI CCWGG 2 cut(s) 1292, 1302
BstSLI GKGCMC 1 cut(s) 491
BstUI CGCG 5 cut(s) 41, 132, 138, 255, 1275
BstV1I GCAGC 3 cut(s) 226, 355, 622
BstZI CGGCCG 3 cut(s) 133, 250, 351
BsuI GTATCC 1 cut(s) 937
BtgI CCRYGG 3 cut(s) 136, 247, 253
BtsCI GGATG 5 cut(s) 693, 778, 784, 925, 1045
BtsIMutI CAGTG 1 cut(s) 1266
BtuMI TCGCGA 1 cut(s) 41
Cac8I GCNNGC 5 cut(s) 39, 225, 244, 594, 834
CciNI GCGGCCGC 1 cut(s) 133
CfoI GCGC 2 cut(s) 17, 793
Cfr10I RCCGGY 3 cut(s) 242, 317, 433
Cfr13I GGNCC 7 cut(s) 143, 477, 487, 488, 496, 848, 1172
Cfr42I CCGCGG 2 cut(s) 139, 256
Cfr9I CCCGGG 1 cut(s) 573
CseI GACGC 1 cut(s) 944
Csp6I GTAC 2 cut(s) 1165, 1244
CspCI CAANNNNNGTGG 2 cut(s) 1082, 1117
CviAII CATG 2 cut(s) 1114, 1333
CviQI GTAC 2 cut(s) 1165, 1244
DdeI CTNAG 2 cut(s) 837, 1034
DpnI GATC 3 cut(s) 299, 1161, 1272
DpnII GATC 3 cut(s) 297, 1159, 1270
EaeI YGGCCR 5 cut(s) 121, 133, 244, 250, 351
EagI CGGCCG 3 cut(s) 133, 250, 351
Eam1104I CTCTTC 5 cut(s) 173, 658, 703, 1200, 1236
EarI CTCTTC 5 cut(s) 173, 658, 703, 1200, 1236
EciI GGCGGA 4 cut(s) 267, 304, 474, 675
EclXI CGGCCG 3 cut(s) 133, 250, 351
Eco24I GRGCYC 4 cut(s) 491, 532, 543, 555
Eco47I GGWCC 1 cut(s) 1172
Eco52I CGGCCG 3 cut(s) 133, 250, 351
Eco57I CTGAAG 2 cut(s) 388, 894
Eco72I CACGTG 2 cut(s) 340, 362
Eco88I CYCGRG 3 cut(s) 292, 331, 573
EcoRII CCWGG 2 cut(s) 1290, 1300
EcoT38I GRGCYC 4 cut(s) 491, 532, 543, 555
FaeI CATG 2 cut(s) 1117, 1336
FalI AAGNNNNNCTT 2 cut(s) 1049, 1081
FaqI GGGAC 1 cut(s) 824
FatI CATG 2 cut(s) 1113, 1332
FauI CCCGC 5 cut(s) 228, 232, 244, 430, 462
FauNDI CATATG 1 cut(s) 1075
FblI GTMKAC 1 cut(s) 933
FokI GGATG 5 cut(s) 700, 785, 791, 932, 1052
FriOI GRGCYC 4 cut(s) 491, 532, 543, 555
GlaI GCGC 2 cut(s) 16, 792
GsaI CCCAGC 1 cut(s) 1309
GsuI CTGGAG 1 cut(s) 1274
HaeII RGCGCY 1 cut(s) 18
HgaI GACGC 1 cut(s) 944
HhaI GCGC 2 cut(s) 17, 793
Hin1II CATG 2 cut(s) 1117, 1336
Hin6I GCGC 2 cut(s) 15, 791
HinP1I GCGC 2 cut(s) 15, 791
HincII GTYRAC 2 cut(s) 870, 934
HindII GTYRAC 2 cut(s) 870, 934
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 9 cut(s) 24, 206, 212, 356, 374, 427, 514, 862, 1250
HphI GGTGA 2 cut(s) 598, 635
Hpy166II GTNNAC 3 cut(s) 870, 934, 1266
Hpy188I TCNGA 3 cut(s) 211, 217, 407
Hpy188III TCNNGA 4 cut(s) 40, 66, 1066, 1094
Hpy8I GTNNAC 3 cut(s) 870, 934, 1266
Hpy99I CGWCG 2 cut(s) 913, 938
HpyAV CCTTC 9 cut(s) 171, 291, 295, 729, 737, 743, 756, 1111, 1141
HpyCH4IV ACGT 2 cut(s) 339, 361
HpyCH4V TGCA 6 cut(s) 343, 610, 1043, 1190, 1223, 1238
HpyF3I CTNAG 2 cut(s) 837, 1034
HpySE526I ACGT 2 cut(s) 339, 361
Hsp92II CATG 2 cut(s) 1117, 1336
HspAI GCGC 2 cut(s) 15, 791
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
KspI CCGCGG 2 cut(s) 139, 256
Kzo9I GATC 3 cut(s) 297, 1159, 1270
LmnI GCTCC 5 cut(s) 163, 535, 538, 550, 629
Lsp1109I GCAGC 3 cut(s) 226, 355, 622
LweI GCATC 3 cut(s) 406, 913, 1030
MaeII ACGT 2 cut(s) 339, 361
MaeIII GTNAC 3 cut(s) 335, 357, 1183
MalI GATC 3 cut(s) 299, 1161, 1272
MbiI CCGCTC 2 cut(s) 158, 632
MboI GATC 3 cut(s) 297, 1159, 1270
MboII GAAGA 8 cut(s) 160, 394, 425, 675, 720, 1063, 1217, 1223
MfeI CAATTG 1 cut(s) 949
MhlI GDGCHC 4 cut(s) 491, 532, 543, 555
MluCI AATT 3 cut(s) 566, 949, 1152
MlyI GAGTC 2 cut(s) 200, 365
MmeI TCCRAC 2 cut(s) 123, 240
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 2 cut(s) 1061, 1134
MseI TTAA 1 cut(s) 993
MspA1I CMGCKG 5 cut(s) 105, 138, 239, 255, 1170
MunI CAATTG 1 cut(s) 949
MvaI CCWGG 2 cut(s) 1292, 1302
MvnI CGCG 5 cut(s) 41, 132, 138, 255, 1275
NaeI GCCGGC 1 cut(s) 244
NciI CCSGG 8 cut(s) 306, 350, 466, 491, 556, 574, 575, 795
NdeI CATATG 1 cut(s) 1075
NdeII GATC 3 cut(s) 297, 1159, 1270
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 2 cut(s) 1117, 1336
NlaIV GGNNCC 6 cut(s) 463, 489, 531, 540, 552, 850
NmeAIII GCCGAG 2 cut(s) 149, 379
NmuCI GTSAC 2 cut(s) 335, 357
NotI GCGGCCGC 1 cut(s) 133
NruI TCGCGA 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 2 cut(s) 1061, 1134
PfeI GAWTC 7 cut(s) 24, 212, 374, 427, 514, 862, 1250
PflMI CCANNNNNTGG 2 cut(s) 505, 1333
PleI GAGTC 2 cut(s) 200, 364
PmaCI CACGTG 2 cut(s) 340, 362
PmlI CACGTG 2 cut(s) 340, 362
PpsI GAGTC 2 cut(s) 200, 364
Ppu21I YACGTR 2 cut(s) 340, 362
Psp6I CCWGG 2 cut(s) 1290, 1300
PspCI CACGTG 2 cut(s) 340, 362
PspFI CCCAGC 1 cut(s) 1305
PspGI CCWGG 2 cut(s) 1290, 1300
PspN4I GGNNCC 6 cut(s) 463, 489, 531, 540, 552, 850
PspOMI GGGCCC 1 cut(s) 487
PspPI GGNCC 7 cut(s) 143, 477, 487, 488, 496, 848, 1172
RruI TCGCGA 1 cut(s) 41
RsaI GTAC 2 cut(s) 1166, 1245
RsaNI GTAC 2 cut(s) 1165, 1244
SacII CCGCGG 2 cut(s) 139, 256
SalI GTCGAC 1 cut(s) 932
SaqAI TTAA 1 cut(s) 993
Sau3AI GATC 3 cut(s) 297, 1159, 1270
Sau96I GGNCC 7 cut(s) 143, 477, 487, 488, 496, 848, 1172
SchI GAGTC 2 cut(s) 200, 365
SduI GDGCHC 4 cut(s) 491, 532, 543, 555
SfaNI GCATC 3 cut(s) 406, 913, 1030
SfiI GGCCNNNNNGGCC 1 cut(s) 141
Sfr303I CCGCGG 2 cut(s) 139, 256
SgrBI CCGCGG 2 cut(s) 139, 256
SinI GGWCC 1 cut(s) 1172
SmaI CCCGGG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 1046
SmoI CTYRAG 1 cut(s) 1046
Sse9I AATT 3 cut(s) 566, 949, 1152
TaiI ACGT 2 cut(s) 342, 364
TaqI TCGA 2 cut(s) 933, 1158
TasI AATT 3 cut(s) 566, 949, 1152
TatI WGTACW 1 cut(s) 1164
TfiI GAWTC 7 cut(s) 24, 212, 374, 427, 514, 862, 1250
Tru1I TTAA 1 cut(s) 993
Tru9I TTAA 1 cut(s) 993
TscAI CASTG 1 cut(s) 1273
TseFI GTSAC 2 cut(s) 335, 357
TseI GCWGC 3 cut(s) 239, 343, 610
Tsp45I GTSAC 2 cut(s) 335, 357
TspDTI ATGAA 5 cut(s) 875, 1029, 1070, 1130, 1321
TspGWI ACGGA 2 cut(s) 897, 1361
TspMI CCCGGG 1 cut(s) 573
TspRI CASTG 1 cut(s) 1273
Van91I CCANNNNNTGG 2 cut(s) 505, 1333
VpaK11BI GGWCC 1 cut(s) 1172
XcmI CCANNNNNNNNNTGG 1 cut(s) 1298
XmaI CCCGGG 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 933
XmnI GAANNNNTTC 2 cut(s) 1061, 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.