Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009954.1

Orthogroup ID

OG0007722

Physical Location & Seq

Genomic Coordinates Forward (+)

750 .. 1493

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009954.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgagaggaggaagcgccataggaatcggcagaaagctcgcgaactcatcaagcttctccatttccagacaaaccctactcccgttttccacttcctccaacagcggcggcggcggcggccgtggtcggggccgcggcggcccaactcccaccgctccttctctcttcaactacctcgccgaccagttcccgcctcaacccgactccgaatccgacccgcccccacctctcccaggagccggccacggccgcggcaaacccttatcccaacctccgccttccttcgcctcggggatcaaacccagttcggccgccggtcggggccatccgggtcacgtgcagcccccgtcagagtcacgtgagggagatgattcgggtttacccaagaagcccgttttcttcagacgggaagatgcggaggagaatctaccggcgggtttgatgacggcgttgggcggaaccgggcgggggaggcccatttcgggcccggcggcccaaaatgtggaggagaatcggcagattggggctccggtggagccccagagggagcccaggaagccgaaattgacccgggaagaggcggtgaagcaggcaatggggatattgcagcagggaggcggtgagggagcggaggttgatggtggtggtggtggtggtggaagagggagaggaggagagagtcatgtatgttgttatggatctctgaccaaaattcgggattaccattacctatcaagacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

25.43

Weight (kDa)

9.69

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53645
fragaria_vesca	FvH4_3g14000 FvH4_3g14000
malus_domestica	MD05G1239100.v1.1 MD10G1217100.v1.1
prunus_persica	Prupe.4G127000_v2.0.a1
pyrus_communis	pycom05g21540 pycom10g18320
rosa_chinensis	RchiOBHm_Chr5g0023231 RchiOBHm_Chr5g0023281
rosa_laevigata	RLG00000032711
rosa_multiflora	Rmu_sc0002343.1_g000043 Rmu_sc0009954.1_g000001 Rmu_sc0009954.1_g000004 Rmu_sc0011343.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056100
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164300 Rh5BG163800 Rh5CG179000 Rh5DG165600 Rh5DG266700
rosa_wichuraiana	Rw5G014840 Rw7G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	502
AccBSI	CCGCTC	2 cut(s)	155, 629
AccII	CGCG	3 cut(s)	41, 135, 252
AclWI	GGATC	2 cut(s)	302, 706
AcoI	YGGCCR	4 cut(s)	118, 241, 247, 309
AcsI	RAATTY	1 cut(s)	711
AcuI	CTGAAG	1 cut(s)	385
AcvI	CACGTG	2 cut(s)	337, 359
AfiI	CCNNNNNNNGG	9 cut(s)	127, 233, 239, 318, 468, 482, 502, 577, 714
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	232, 551
AluBI	AGCT	2 cut(s)	37, 54
AluI	AGCT	2 cut(s)	37, 54
AlwI	GGATC	2 cut(s)	302, 706
Ama87I	CYCGRG	2 cut(s)	289, 570
ApaI	GGGCCC	1 cut(s)	488
ApeKI	GCWGC	2 cut(s)	340, 607
ApoI	RAATTY	1 cut(s)	711
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	7 cut(s)	130, 140, 322, 474, 484, 485, 493
AsuC2I	CCSGG	5 cut(s)	330, 463, 488, 571, 572
AsuHPI	GGTGA	2 cut(s)	595, 632
AvaI	CYCGRG	2 cut(s)	289, 570
BaeGI	GKGCMC	1 cut(s)	488
BanII	GRGCYC	4 cut(s)	488, 529, 540, 552
BbrPI	CACGTG	2 cut(s)	337, 359
BbvI	GCAGC	2 cut(s)	352, 619
BccI	CCATC	2 cut(s)	333, 632
BceAI	ACGGC	3 cut(s)	105, 262, 462
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	2 cut(s)	234, 553
BcnI	CCSGG	5 cut(s)	330, 463, 488, 571, 572
BfoI	RGCGCY	1 cut(s)	18
BglI	GCCNNNNNGGC	1 cut(s)	138
Bme1390I	CCNGG	7 cut(s)	234, 330, 463, 488, 553, 571, 572
BmeT110I	CYCGRG	2 cut(s)	289, 570
BmgT120I	GGNCC	7 cut(s)	130, 140, 322, 474, 484, 485, 493
BmiI	GGNNCC	8 cut(s)	131, 238, 323, 460, 486, 528, 537, 549
BmrFI	CCNGG	7 cut(s)	234, 330, 463, 488, 553, 571, 572
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	403
BmuI	ACTGGG	1 cut(s)	297
BpuMI	CCSGG	5 cut(s)	330, 463, 488, 571, 572
BsaAI	YACGTR	2 cut(s)	337, 359
BsaJI	CCNNGG	8 cut(s)	121, 133, 232, 244, 250, 288, 551, 570
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	9 cut(s)	127, 233, 239, 318, 468, 482, 502, 577, 714
Bse118I	RCCGGY	3 cut(s)	239, 314, 430
Bse1I	ACTGG	2 cut(s)	184, 303
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	2 cut(s)	234, 553
BseDI	CCNNGG	8 cut(s)	121, 133, 232, 244, 250, 288, 551, 570
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	9 cut(s)	127, 233, 239, 318, 468, 482, 502, 577, 714
BseMI	GCAATG	1 cut(s)	600
BseNI	ACTGG	2 cut(s)	184, 303
BseRI	GAGGAG	5 cut(s)	21, 434, 521, 684, 687
BseSI	GKGCMC	1 cut(s)	488
BseX3I	CGGCCG	3 cut(s)	118, 247, 309
BseXI	GCAGC	2 cut(s)	352, 619
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	3 cut(s)	41, 135, 252
Bsh1285I	CGRYCG	4 cut(s)	121, 250, 312, 319
BsiEI	CGRYCG	4 cut(s)	121, 250, 312, 319
BsiHKCI	CYCGRG	2 cut(s)	289, 570
BsiSI	CCGG	8 cut(s)	240, 315, 329, 431, 462, 488, 530, 571
BslI	CCNNNNNNNGG	9 cut(s)	127, 233, 239, 318, 468, 482, 502, 577, 714
BsoBI	CYCGRG	2 cut(s)	289, 570
Bsp120I	GGGCCC	1 cut(s)	484
Bsp1286I	GDGCHC	4 cut(s)	488, 529, 540, 552
Bsp143I	GATC	2 cut(s)	294, 698
Bsp68I	TCGCGA	1 cut(s)	41
BspFNI	CGCG	3 cut(s)	41, 135, 252
BspLI	GGNNCC	8 cut(s)	131, 238, 323, 460, 486, 528, 537, 549
BspPI	GGATC	2 cut(s)	302, 706
BsrBI	CCGCTC	2 cut(s)	155, 629
BsrDI	GCAATG	1 cut(s)	600
BsrFI	RCCGGY	3 cut(s)	239, 314, 430
BsrI	ACTGG	2 cut(s)	184, 303
BssAI	RCCGGY	3 cut(s)	239, 314, 430
BssECI	CCNNGG	8 cut(s)	121, 133, 232, 244, 250, 288, 551, 570
BssMI	GATC	2 cut(s)	294, 698
Bst2UI	CCWGG	2 cut(s)	234, 553
Bst4CI	ACNGT	1 cut(s)	741
Bst6I	CTCTTC	3 cut(s)	170, 570, 655
BstBAI	YACGTR	2 cut(s)	337, 359
BstC8I	GCNNGC	3 cut(s)	39, 241, 591
BstDSI	CCRYGG	4 cut(s)	121, 133, 244, 250
BstENI	CCTNNNNNAGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	3 cut(s)	41, 135, 252
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	297, 701
BstMBI	GATC	2 cut(s)	294, 698
BstMCI	CGRYCG	4 cut(s)	121, 250, 312, 319
BstMWI	GCNNNNNNNGC	7 cut(s)	111, 114, 117, 138, 249, 472, 556
BstNI	CCWGG	2 cut(s)	234, 553
BstSCI	CCNGG	7 cut(s)	232, 328, 461, 486, 551, 569, 570
BstSLI	GKGCMC	1 cut(s)	488
BstUI	CGCG	3 cut(s)	41, 135, 252
BstV1I	GCAGC	2 cut(s)	352, 619
BstX2I	RGATCY	1 cut(s)	698
BstYI	RGATCY	1 cut(s)	698
BstZI	CGGCCG	3 cut(s)	118, 247, 309
BtgI	CCRYGG	4 cut(s)	121, 133, 244, 250
BtsCI	GGATG	1 cut(s)	325
BtuMI	TCGCGA	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	39, 241, 591
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	3 cut(s)	239, 314, 430
Cfr13I	GGNCC	7 cut(s)	130, 140, 322, 474, 484, 485, 493
Cfr42I	CCGCGG	2 cut(s)	136, 253
Cfr9I	CCCGGG	1 cut(s)	570
CviAII	CATG	1 cut(s)	683
DpnI	GATC	2 cut(s)	296, 700
DpnII	GATC	2 cut(s)	294, 698
EaeI	YGGCCR	4 cut(s)	118, 241, 247, 309
EagI	CGGCCG	3 cut(s)	118, 247, 309
Eam1104I	CTCTTC	3 cut(s)	170, 570, 655
EarI	CTCTTC	3 cut(s)	170, 570, 655
EciI	GGCGGA	2 cut(s)	264, 471
EclXI	CGGCCG	3 cut(s)	118, 247, 309
Eco24I	GRGCYC	4 cut(s)	488, 529, 540, 552
Eco52I	CGGCCG	3 cut(s)	118, 247, 309
Eco57I	CTGAAG	1 cut(s)	385
Eco72I	CACGTG	2 cut(s)	337, 359
Eco88I	CYCGRG	2 cut(s)	289, 570
EcoNI	CCTNNNNNAGG	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	232, 551
EcoT38I	GRGCYC	4 cut(s)	488, 529, 540, 552
FaeI	CATG	1 cut(s)	686
FaiI	YATR	4 cut(s)	20, 684, 688, 696
FatI	CATG	1 cut(s)	682
FauI	CCCGC	4 cut(s)	198, 225, 427, 459
FokI	GGATG	1 cut(s)	312
FriOI	GRGCYC	4 cut(s)	488, 529, 540, 552
GlaI	GCGC	1 cut(s)	16
HaeII	RGCGCY	1 cut(s)	18
HapII	CCGG	8 cut(s)	240, 315, 329, 431, 462, 488, 530, 571
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	686
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	8 cut(s)	24, 203, 209, 353, 371, 424, 511, 679
HpaII	CCGG	8 cut(s)	240, 315, 329, 431, 462, 488, 530, 571
HphI	GGTGA	2 cut(s)	595, 632
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	5 cut(s)	208, 214, 352, 404, 705
Hpy188III	TCNNGA	4 cut(s)	40, 66, 716, 735
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	3 cut(s)	168, 288, 292
HpyCH4III	ACNGT	1 cut(s)	741
HpyCH4IV	ACGT	2 cut(s)	336, 358
HpyCH4V	TGCA	2 cut(s)	340, 607
HpyF10VI	GCNNNNNNNGC	7 cut(s)	111, 114, 117, 138, 249, 472, 556
HpySE526I	ACGT	2 cut(s)	336, 358
Hsp92II	CATG	1 cut(s)	686
HspAI	GCGC	1 cut(s)	15
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
KspI	CCGCGG	2 cut(s)	136, 253
Kzo9I	GATC	2 cut(s)	294, 698
LmnI	GCTCC	6 cut(s)	160, 236, 532, 535, 547, 626
Lsp1109I	GCAGC	2 cut(s)	352, 619
LweI	GCATC	1 cut(s)	403
MaeII	ACGT	2 cut(s)	336, 358
MaeIII	GTNAC	2 cut(s)	332, 354
MalI	GATC	2 cut(s)	296, 700
MbiI	CCGCTC	2 cut(s)	155, 629
MboI	GATC	2 cut(s)	294, 698
MboII	GAAGA	5 cut(s)	157, 391, 422, 587, 672
MflI	RGATCY	1 cut(s)	698
MhlI	GDGCHC	4 cut(s)	488, 529, 540, 552
MluCI	AATT	2 cut(s)	563, 711
MlyI	GAGTC	3 cut(s)	197, 362, 688
MmeI	TCCRAC	2 cut(s)	123, 237
MroNI	GCCGGC	1 cut(s)	239
MspA1I	CMGCKG	3 cut(s)	105, 135, 252
MspI	CCGG	8 cut(s)	240, 315, 329, 431, 462, 488, 530, 571
MspR9I	CCNGG	7 cut(s)	234, 330, 463, 488, 553, 571, 572
MvaI	CCWGG	2 cut(s)	234, 553
MvnI	CGCG	3 cut(s)	41, 135, 252
MwoI	GCNNNNNNNGC	7 cut(s)	111, 114, 117, 138, 249, 472, 556
NaeI	GCCGGC	1 cut(s)	241
NciI	CCSGG	5 cut(s)	330, 463, 488, 571, 572
NdeII	GATC	2 cut(s)	294, 698
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	1 cut(s)	686
NlaIV	GGNNCC	8 cut(s)	131, 238, 323, 460, 486, 528, 537, 549
NmuCI	GTSAC	2 cut(s)	332, 354
NruI	TCGCGA	1 cut(s)	41
PdiI	GCCGGC	1 cut(s)	241
PfeI	GAWTC	5 cut(s)	24, 209, 371, 424, 511
PflMI	CCANNNNNTGG	1 cut(s)	502
PleI	GAGTC	3 cut(s)	197, 361, 687
PmaCI	CACGTG	2 cut(s)	337, 359
PmlI	CACGTG	2 cut(s)	337, 359
PpsI	GAGTC	3 cut(s)	197, 361, 687
Ppu21I	YACGTR	2 cut(s)	337, 359
Psp6I	CCWGG	2 cut(s)	232, 551
PspCI	CACGTG	2 cut(s)	337, 359
PspGI	CCWGG	2 cut(s)	232, 551
PspN4I	GGNNCC	8 cut(s)	131, 238, 323, 460, 486, 528, 537, 549
PspOMI	GGGCCC	1 cut(s)	484
PspPI	GGNCC	7 cut(s)	130, 140, 322, 474, 484, 485, 493
PsuI	RGATCY	1 cut(s)	698
RruI	TCGCGA	1 cut(s)	41
SacII	CCGCGG	2 cut(s)	136, 253
Sau3AI	GATC	2 cut(s)	294, 698
Sau96I	GGNCC	7 cut(s)	130, 140, 322, 474, 484, 485, 493
SchI	GAGTC	3 cut(s)	197, 362, 688
ScrFI	CCNGG	7 cut(s)	234, 330, 463, 488, 553, 571, 572
SduI	GDGCHC	4 cut(s)	488, 529, 540, 552
SetI	ASST	9 cut(s)	39, 56, 177, 229, 274, 339, 361, 636, 732
SfaNI	GCATC	1 cut(s)	403
SfiI	GGCCNNNNNGGCC	1 cut(s)	138
Sfr303I	CCGCGG	2 cut(s)	136, 253
SgrBI	CCGCGG	2 cut(s)	136, 253
SmaI	CCCGGG	1 cut(s)	572
Sse9I	AATT	2 cut(s)	563, 711
StyD4I	CCNGG	7 cut(s)	232, 328, 461, 486, 551, 569, 570
TaaI	ACNGT	1 cut(s)	741
TaiI	ACGT	2 cut(s)	339, 361
TasI	AATT	2 cut(s)	563, 711
TfiI	GAWTC	5 cut(s)	24, 209, 371, 424, 511
TseFI	GTSAC	2 cut(s)	332, 354
TseI	GCWGC	2 cut(s)	340, 607
Tsp45I	GTSAC	2 cut(s)	332, 354
TspMI	CCCGGG	1 cut(s)	570
Van91I	CCANNNNNTGG	1 cut(s)	502
XagI	CCTNNNNNAGG	1 cut(s)	231
XapI	RAATTY	1 cut(s)	711
XmaI	CCCGGG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.