Rh5CG179000

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007722
Physical Location & Seq
Forward (+)
17413593 .. 17418318
4726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG179000.1

Sequence Viewer

Length: 1173 bp
ATGAGAGGAGGAAGCGCCATAGGAATCGGCAGAAAGCTCGCGAACCCATCAAGCTTCTCCATTTCCAGACAAACCCTACTTCCGTTTTCCACTTCCTCCAACAGCGGCGGTGGCGGCGGCCGTGGTCGCGGCCGCGGCGGCCCAACTCCCACCGCTCCTTCTCTCTTCAACTACCTCGCCGACCAGTTCCCGCCCCAACCCGACTCCGAATCCGACCCGCCCCCACCTCTACCAGGAGCCGGCCACGGCCGTGGCAAACTCTTATCCCAACCTCCGCCTTCCTTCGCCTCGGGGATCAAACCCGGTTCGTCCGCCGGTCGGGGCGGCTCGGGTCACGTGCAGCCCCTGGCAGAGTCACGTGAGGGAGATGATTCGGGTTTACCCAAGAAGCCCGTTTTCTTCAGACGGGAAGATGCGGAGGAGAATCTACCGGCTGGTTTGATGACGGCGTTGGGCGGAACGGGGCGGGGGAGGCCCATTTCGGGCCCGGCGGCCCAAAGTGTGGAGGAGAATCGGCAGATTGGGGCTCCGGTGGAGCCCAAGAGGGAGCCCCGGAAGCCGAAATTGACCCGGGAGGAGGCGGTGAAGCAAGCAATGGGGATATTGCAGCAGGGGGGCGGTGAGGGAGCGGAGGTTGATGGTGGTGGTGGCGGAAGAGGGAGAGGAGGAGAGAGAGGGATGAGAGGGAGAGGAGGAGGAAGAGGAAGAGGAAGAGGGAGAGGAGGGAGGGGAAGGAGAGAAGGAGAAGGAGATAGGAGAAGGCAAGGAGATGGGGATGGCGGCATTGCGCCGGGGCTTTATCTTGGGGACAATGCCGATGGGGAGAAGCTGGCTAAGAGGCTTGGCCCTGAAGTTATGAATCAGTTGACTGAAGCATTTGAGGATATGAGTAATCAAGTGCTTCCGTCGCCTTTGGATGATGCTTATGTCGACGCATTGGATACCAATTGTATGATTGAGTTTGAGCCGGAGTATCTTATGGGGGAGTTTAATCAAAACCCAGATATTGATGAAAAACCGCCTATTCCTCTCAGGGACGCACTTGAGAAGATGAAGCCTTTCTTGATGGCATATGAGGGTATTCAAAGTCAAGAGGAGTGGGAGGTACATTTGCTTACTCTTGCGTCATTTTTGACAACTGATTTTGCTAATGTGCAATGTAGTTCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

390

Amino Acids

41.03

Weight (kDa)

5.71

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 502
AccBSI CCGCTC 2 cut(s) 155, 629
AccI GTMKAC 1 cut(s) 930
AccII CGCG 3 cut(s) 41, 129, 135
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 4 cut(s) 118, 130, 241, 247
AcuI CTGAAG 3 cut(s) 385, 870, 891
AcvI CACGTG 2 cut(s) 337, 359
AfaI GTAC 1 cut(s) 1107
AfiI CCNNNNNNNGG 6 cut(s) 233, 239, 318, 482, 502, 577
AgsI TTSAA 2 cut(s) 169, 1085
AjnI CCWGG 2 cut(s) 232, 345
AleI CACNNNNGTG 1 cut(s) 249
AluBI AGCT 3 cut(s) 37, 54, 829
AluI AGCT 3 cut(s) 37, 54, 829
AlwI GGATC 1 cut(s) 302
AlwNI CAGNNNCTG 1 cut(s) 346
Ama87I CYCGRG 3 cut(s) 289, 328, 570
AoxI GGCC 9 cut(s) 118, 130, 139, 241, 247, 473, 484, 492, 844
ApaI GGGCCC 1 cut(s) 488
ApeKI GCWGC 2 cut(s) 340, 607
Asp700I GAANNNNTTC 1 cut(s) 1058
AspLEI GCGC 2 cut(s) 17, 790
AspS9I GGNCC 6 cut(s) 140, 474, 484, 485, 493, 845
AsuC2I CCSGG 6 cut(s) 303, 488, 553, 571, 572, 792
AsuHPI GGTGA 2 cut(s) 595, 632
AvaI CYCGRG 3 cut(s) 289, 328, 570
BaeGI GKGCMC 1 cut(s) 488
BanII GRGCYC 4 cut(s) 488, 529, 540, 552
BbrPI CACGTG 2 cut(s) 337, 359
BbvI GCAGC 2 cut(s) 352, 619
BccI CCATC 6 cut(s) 55, 632, 764, 770, 812, 1060
BceAI ACGGC 4 cut(s) 105, 234, 262, 462
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 2 cut(s) 234, 347
BciVI GTATCC 1 cut(s) 934
BcnI CCSGG 6 cut(s) 303, 488, 553, 571, 572, 792
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 1 cut(s) 934
BglI GCCNNNNNGGC 1 cut(s) 138
Bme1390I CCNGG 8 cut(s) 234, 303, 347, 488, 553, 571, 572, 792
BmeT110I CYCGRG 3 cut(s) 289, 328, 570
BmgT120I GGNCC 6 cut(s) 140, 474, 484, 485, 493, 845
BmiI GGNNCC 5 cut(s) 238, 486, 528, 537, 549
BmrFI CCNGG 8 cut(s) 234, 303, 347, 488, 553, 571, 572, 792
BmsI GCATC 2 cut(s) 403, 910
BpuEI CTTGAG 1 cut(s) 1064
BpuMI CCSGG 6 cut(s) 303, 488, 553, 571, 572, 792
BsaAI YACGTR 2 cut(s) 337, 359
BsaJI CCNNGG 9 cut(s) 121, 133, 244, 250, 288, 345, 551, 570, 791
BsaWI WCCGGW 1 cut(s) 529
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bsc4I CCNNNNNNNGG 6 cut(s) 233, 239, 318, 482, 502, 577
Bse118I RCCGGY 3 cut(s) 239, 314, 430
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 3 cut(s) 600, 783, 1163
BseBI CCWGG 2 cut(s) 234, 347
BseDI CCNNGG 9 cut(s) 121, 133, 244, 250, 288, 345, 551, 570, 791
BseGI GGATG 3 cut(s) 684, 781, 922
BseLI CCNNNNNNNGG 6 cut(s) 233, 239, 318, 482, 502, 577
BseMI GCAATG 3 cut(s) 600, 783, 1163
BseMII CTCAG 1 cut(s) 1045
BseNI ACTGG 1 cut(s) 184
BseSI GKGCMC 1 cut(s) 488
BseX3I CGGCCG 3 cut(s) 118, 130, 247
BseXI GCAGC 2 cut(s) 352, 619
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 3 cut(s) 41, 129, 135
Bsh1285I CGRYCG 4 cut(s) 121, 133, 250, 319
BshFI GGCC 9 cut(s) 120, 132, 141, 243, 249, 475, 486, 494, 846
BsiEI CGRYCG 4 cut(s) 121, 133, 250, 319
BsiHKCI CYCGRG 3 cut(s) 289, 328, 570
BslFI GGGAC 2 cut(s) 821, 1049
BslI CCNNNNNNNGG 6 cut(s) 233, 239, 318, 482, 502, 577
BsmFI GGGAC 2 cut(s) 821, 1049
BsnI GGCC 9 cut(s) 120, 132, 141, 243, 249, 475, 486, 494, 846
BsoBI CYCGRG 3 cut(s) 289, 328, 570
Bsp120I GGGCCC 1 cut(s) 484
Bsp1286I GDGCHC 4 cut(s) 488, 529, 540, 552
Bsp143I GATC 1 cut(s) 294
Bsp68I TCGCGA 1 cut(s) 41
BspANI GGCC 9 cut(s) 120, 132, 141, 243, 249, 475, 486, 494, 846
BspCNI CTCAG 1 cut(s) 1044
BspFNI CGCG 3 cut(s) 41, 129, 135
BspLI GGNNCC 5 cut(s) 238, 486, 528, 537, 549
BspPI GGATC 1 cut(s) 302
BsrBI CCGCTC 2 cut(s) 155, 629
BsrDI GCAATG 3 cut(s) 600, 783, 1163
BsrFI RCCGGY 3 cut(s) 239, 314, 430
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 3 cut(s) 239, 314, 430
BssECI CCNNGG 9 cut(s) 121, 133, 244, 250, 288, 345, 551, 570, 791
BssMI GATC 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 234, 347
Bst6I CTCTTC 5 cut(s) 170, 649, 694, 700, 706
BstBAI YACGTR 2 cut(s) 337, 359
BstC8I GCNNGC 4 cut(s) 39, 241, 591, 831
BstDEI CTNAG 2 cut(s) 834, 1031
BstDSI CCRYGG 4 cut(s) 121, 133, 244, 250
BstENI CCTNNNNNAGG 1 cut(s) 231
BstF5I GGATG 3 cut(s) 684, 781, 922
BstFNI CGCG 3 cut(s) 41, 129, 135
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 790
BstKTI GATC 1 cut(s) 297
BstMBI GATC 1 cut(s) 294
BstMCI CGRYCG 4 cut(s) 121, 133, 250, 319
BstMWI GCNNNNNNNGC 8 cut(s) 111, 114, 126, 135, 138, 472, 556, 907
BstNI CCWGG 2 cut(s) 234, 347
BstSCI CCNGG 8 cut(s) 232, 301, 345, 486, 551, 569, 570, 790
BstSLI GKGCMC 1 cut(s) 488
BstUI CGCG 3 cut(s) 41, 129, 135
BstV1I GCAGC 2 cut(s) 352, 619
BstXI CCANNNNNNTGG 1 cut(s) 251
BstZI CGGCCG 3 cut(s) 118, 130, 247
BsuI GTATCC 1 cut(s) 934
BsuRI GGCC 9 cut(s) 120, 132, 141, 243, 249, 475, 486, 494, 846
BtgI CCRYGG 4 cut(s) 121, 133, 244, 250
BtsCI GGATG 3 cut(s) 684, 781, 922
BtuMI TCGCGA 1 cut(s) 41
Cac8I GCNNGC 4 cut(s) 39, 241, 591, 831
CaiI CAGNNNCTG 1 cut(s) 346
CciNI GCGGCCGC 1 cut(s) 130
CfoI GCGC 2 cut(s) 17, 790
Cfr10I RCCGGY 3 cut(s) 239, 314, 430
Cfr13I GGNCC 6 cut(s) 140, 474, 484, 485, 493, 845
Cfr42I CCGCGG 1 cut(s) 136
Cfr9I CCCGGG 1 cut(s) 570
CseI GACGC 3 cut(s) 941, 1046, 1113
Csp6I GTAC 1 cut(s) 1106
CspCI CAANNNNNGTGG 2 cut(s) 1079, 1114
CviQI GTAC 1 cut(s) 1106
DdeI CTNAG 2 cut(s) 834, 1031
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
EaeI YGGCCR 4 cut(s) 118, 130, 241, 247
EagI CGGCCG 3 cut(s) 118, 130, 247
Eam1104I CTCTTC 5 cut(s) 170, 649, 694, 700, 706
EarI CTCTTC 5 cut(s) 170, 649, 694, 700, 706
EciI GGCGGA 4 cut(s) 264, 301, 471, 666
EclXI CGGCCG 3 cut(s) 118, 130, 247
Eco24I GRGCYC 4 cut(s) 488, 529, 540, 552
Eco52I CGGCCG 3 cut(s) 118, 130, 247
Eco57I CTGAAG 3 cut(s) 385, 870, 891
Eco72I CACGTG 2 cut(s) 337, 359
Eco88I CYCGRG 3 cut(s) 289, 328, 570
EcoNI CCTNNNNNAGG 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 232, 345
EcoT38I GRGCYC 4 cut(s) 488, 529, 540, 552
FaiI YATR 8 cut(s) 20, 857, 887, 927, 953, 980, 1072, 1074
FalI AAGNNNNNCTT 2 cut(s) 1046, 1078
FaqI GGGAC 2 cut(s) 821, 1049
FauI CCCGC 3 cut(s) 198, 225, 459
FauNDI CATATG 1 cut(s) 1072
FblI GTMKAC 1 cut(s) 930
FokI GGATG 3 cut(s) 691, 788, 929
FriOI GRGCYC 4 cut(s) 488, 529, 540, 552
GlaI GCGC 2 cut(s) 16, 789
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 9 cut(s) 120, 132, 141, 243, 249, 475, 486, 494, 846
HgaI GACGC 3 cut(s) 941, 1046, 1113
HhaI GCGC 2 cut(s) 17, 790
Hin6I GCGC 2 cut(s) 15, 788
HinP1I GCGC 2 cut(s) 15, 788
HincII GTYRAC 2 cut(s) 867, 931
HindII GTYRAC 2 cut(s) 867, 931
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 8 cut(s) 24, 203, 209, 353, 371, 424, 511, 859
HphI GGTGA 2 cut(s) 595, 632
Hpy166II GTNNAC 3 cut(s) 380, 867, 931
Hpy188I TCNGA 3 cut(s) 208, 214, 404
Hpy188III TCNNGA 4 cut(s) 40, 66, 1063, 1091
Hpy8I GTNNAC 3 cut(s) 380, 867, 931
Hpy99I CGWCG 2 cut(s) 910, 935
HpyAV CCTTC 7 cut(s) 168, 288, 292, 726, 734, 740, 753
HpyCH4IV ACGT 2 cut(s) 336, 358
HpyCH4V TGCA 3 cut(s) 340, 607, 1156
HpyF10VI GCNNNNNNNGC 8 cut(s) 111, 114, 126, 135, 138, 472, 556, 907
HpyF3I CTNAG 2 cut(s) 834, 1031
HpySE526I ACGT 2 cut(s) 336, 358
HspAI GCGC 2 cut(s) 15, 788
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
KspI CCGCGG 1 cut(s) 136
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 6 cut(s) 160, 236, 532, 535, 547, 626
Lsp1109I GCAGC 2 cut(s) 352, 619
LweI GCATC 2 cut(s) 403, 910
MaeII ACGT 2 cut(s) 336, 358
MaeIII GTNAC 2 cut(s) 332, 354
MalI GATC 1 cut(s) 296
MbiI CCGCTC 2 cut(s) 155, 629
MboI GATC 1 cut(s) 294
MboII GAAGA 8 cut(s) 157, 391, 422, 666, 711, 717, 723, 1060
MfeI CAATTG 1 cut(s) 946
MhlI GDGCHC 4 cut(s) 488, 529, 540, 552
MluCI AATT 2 cut(s) 563, 946
MlyI GAGTC 2 cut(s) 197, 362
MmeI TCCRAC 2 cut(s) 123, 237
MroNI GCCGGC 1 cut(s) 239
MroXI GAANNNNTTC 1 cut(s) 1058
MseI TTAA 1 cut(s) 990
MslI CAYNNNNRTG 1 cut(s) 249
MspA1I CMGCKG 2 cut(s) 105, 135
MspR9I CCNGG 8 cut(s) 234, 303, 347, 488, 553, 571, 572, 792
MunI CAATTG 1 cut(s) 946
MvaI CCWGG 2 cut(s) 234, 347
MvnI CGCG 3 cut(s) 41, 129, 135
MwoI GCNNNNNNNGC 8 cut(s) 111, 114, 126, 135, 138, 472, 556, 907
NaeI GCCGGC 1 cut(s) 241
NciI CCSGG 6 cut(s) 303, 488, 553, 571, 572, 792
NdeI CATATG 1 cut(s) 1072
NdeII GATC 1 cut(s) 294
NgoMIV GCCGGC 1 cut(s) 239
NlaIV GGNNCC 5 cut(s) 238, 486, 528, 537, 549
NmuCI GTSAC 2 cut(s) 332, 354
NotI GCGGCCGC 1 cut(s) 130
NruI TCGCGA 1 cut(s) 41
OliI CACNNNNGTG 1 cut(s) 249
PdiI GCCGGC 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 1058
PfeI GAWTC 6 cut(s) 24, 209, 371, 424, 511, 859
PflMI CCANNNNNTGG 1 cut(s) 502
PleI GAGTC 2 cut(s) 197, 361
PmaCI CACGTG 2 cut(s) 337, 359
PmlI CACGTG 2 cut(s) 337, 359
PpsI GAGTC 2 cut(s) 197, 361
Ppu21I YACGTR 2 cut(s) 337, 359
Psp6I CCWGG 2 cut(s) 232, 345
PspCI CACGTG 2 cut(s) 337, 359
PspGI CCWGG 2 cut(s) 232, 345
PspN4I GGNNCC 5 cut(s) 238, 486, 528, 537, 549
PspOMI GGGCCC 1 cut(s) 484
PspPI GGNCC 6 cut(s) 140, 474, 484, 485, 493, 845
PstNI CAGNNNCTG 1 cut(s) 346
RruI TCGCGA 1 cut(s) 41
RsaI GTAC 1 cut(s) 1107
RsaNI GTAC 1 cut(s) 1106
RseI CAYNNNNRTG 1 cut(s) 249
SacII CCGCGG 1 cut(s) 136
SalI GTCGAC 1 cut(s) 929
SaqAI TTAA 1 cut(s) 990
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 6 cut(s) 140, 474, 484, 485, 493, 845
SchI GAGTC 2 cut(s) 197, 362
ScrFI CCNGG 8 cut(s) 234, 303, 347, 488, 553, 571, 572, 792
SduI GDGCHC 4 cut(s) 488, 529, 540, 552
SfaNI GCATC 2 cut(s) 403, 910
SfiI GGCCNNNNNGGCC 1 cut(s) 138
Sfr303I CCGCGG 1 cut(s) 136
SgrBI CCGCGG 1 cut(s) 136
SmaI CCCGGG 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 1043
SmoI CTYRAG 1 cut(s) 1043
Sse9I AATT 2 cut(s) 563, 946
StyD4I CCNGG 8 cut(s) 232, 301, 345, 486, 551, 569, 570, 790
TaiI ACGT 2 cut(s) 339, 361
TaqI TCGA 1 cut(s) 930
TasI AATT 2 cut(s) 563, 946
TfiI GAWTC 6 cut(s) 24, 209, 371, 424, 511, 859
Tru1I TTAA 1 cut(s) 990
Tru9I TTAA 1 cut(s) 990
TseFI GTSAC 2 cut(s) 332, 354
TseI GCWGC 2 cut(s) 340, 607
Tsp45I GTSAC 2 cut(s) 332, 354
TspDTI ATGAA 3 cut(s) 872, 1026, 1067
TspGWI ACGGA 2 cut(s) 72, 894
TspMI CCCGGG 1 cut(s) 570
Van91I CCANNNNNTGG 1 cut(s) 502
XagI CCTNNNNNAGG 1 cut(s) 231
XmaI CCCGGG 1 cut(s) 570
XmiI GTMKAC 1 cut(s) 930
XmnI GAANNNNTTC 1 cut(s) 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.