Rh5DG165600

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007722
Physical Location & Seq
Forward (+)
17289803 .. 17294528
4726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG165600.1

Sequence Viewer

Length: 1356 bp
ATGAGAGGAGGAAGCGCCATAGGAATCGGCAGAAAGCTCGCGAACCCATCAAGCTTCTCCATTTCCAGACAAACCCTACTTCCGTTTTCCACTTCCTCCAACAGCGGCGGTGGCGGCGGCCGTGGTCGCGGCCGCGGCGGCCCAACTCCCACCGCTCCTTCTCTCTTCAACTACCTCGCCGACCAGTTCCCGCCCCAACCCGACTCCGAATCCGACCCGCCCCCACCTCTACCAGGAGCCGGCCACGGCCGTGGCAAACTCTTATCCCAACCTCCGCCTTCCTTCGCCTCGGGGATCAAACCCGGTTCGTCCGCCGGTCGGGGCGGCTCGGGTCACGTGCAGCCCCTGGCAGAGTCACGTGAGGGAGATGATTCGGGTTTACCCAAGAAGCCCGTTTTCTTCAGACGGGAAGATGCGGAGGAGAATCTACCGGCTGGTTTGATGACGGCGTTGGGCGGAACGGGGCGGGGGAGGCCCATTTCGGGCCCGGCGGCCCAAAGTGTGGAGGAGAATCGGCAGATTGGGGCTCCGGTGGAGCCCAAGAGGGAGCCCCGGAAGCCGAAATTGACCCGGGAGGAGGCGGTGAAGCAAGCAATGGGGATATTGCAGCAGGGGGGCGGTGAGGGAGCGGAGGTTGATGGTGGTGGTGGCGGAAGAGGGAGAGGAGGAGAGAGAGGGATGAGAGGGAGAGGAGGAGGAAGAGGAAGAGGAAGAGGGAGAGGAGGGAGGGGAAGGAGAGAAGGAGAAGGAGATAGGAGAAGGCAAGGAGATGGGGATGGCGGCATTGCGCCGGGGCTTTATCTTGGGGACAATGCCGATGGGGAGAAGCTGGCTAAGAGGCTTGGCCCTGAAGTTATGAATCAGTTGACTGAAGCATTTGAGGATATGAGTAATCAAGTGCTTCCGTCGCCTTTGGATGATGCTTATGTCGACGCATTGGATACCAATTGTATGATTGAGTTTGAGCCGGAGTATCTTATGGGGGAGTTTAATCAAAACCCAGATATTGATGAAAAACCGCCTATTCCTCTCAGGGACGCACTTGAGAAGATGAAGCCTTTCTTGATGGCATATGAGGGTATTCAAAGTCAAGAGGAGTGGGAGGAAGCCATGAAGGAGACAATGGAAAGAGTTCCATTGTTGAAGGAAATTGTCGATCAGTACAGCGGACCAGATAGGGTAACTGCAAAGAAACAACAAGAAGAGTTAGAAAGAGTTGCAAAAACTCTTCCTGCAAAAGTACCTGATTCTGTAAAGCAGTTCACTGATCGCGTGTTGCTTTCTCTCCAGGTTAAAGTTTTGTCCTTTTGCATTCTAGAACCTTGTCATGAAAAACAAGAAACCAATTTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

451

Amino Acids

48.27

Weight (kDa)

5.79

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 502
AccBSI CCGCTC 2 cut(s) 155, 629
AccI GTMKAC 1 cut(s) 930
AccII CGCG 4 cut(s) 41, 129, 135, 1272
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 4 cut(s) 118, 130, 241, 247
AcuI CTGAAG 3 cut(s) 385, 870, 891
AcvI CACGTG 2 cut(s) 337, 359
AfaI GTAC 2 cut(s) 1163, 1242
AfiI CCNNNNNNNGG 6 cut(s) 233, 239, 318, 482, 502, 577
AgsI TTSAA 3 cut(s) 169, 1085, 1144
AjnI CCWGG 3 cut(s) 232, 345, 1287
AleI CACNNNNGTG 1 cut(s) 249
AluBI AGCT 3 cut(s) 37, 54, 829
AluI AGCT 3 cut(s) 37, 54, 829
Alw26I GTCTC 1 cut(s) 1112
AlwI GGATC 1 cut(s) 302
AlwNI CAGNNNCTG 1 cut(s) 346
Ama87I CYCGRG 3 cut(s) 289, 328, 570
AoxI GGCC 9 cut(s) 118, 130, 139, 241, 247, 473, 484, 492, 844
ApaI GGGCCC 1 cut(s) 488
ApeKI GCWGC 2 cut(s) 340, 607
Asp700I GAANNNNTTC 2 cut(s) 1058, 1131
AspLEI GCGC 2 cut(s) 17, 790
AspS9I GGNCC 7 cut(s) 140, 474, 484, 485, 493, 845, 1169
AsuC2I CCSGG 6 cut(s) 303, 488, 553, 571, 572, 792
AsuHPI GGTGA 2 cut(s) 595, 632
AvaI CYCGRG 3 cut(s) 289, 328, 570
AvaII GGWCC 1 cut(s) 1169
BaeGI GKGCMC 1 cut(s) 488
BanII GRGCYC 4 cut(s) 488, 529, 540, 552
BbrPI CACGTG 2 cut(s) 337, 359
BbvI GCAGC 2 cut(s) 352, 619
BccI CCATC 6 cut(s) 55, 632, 764, 770, 812, 1060
BceAI ACGGC 4 cut(s) 105, 234, 262, 462
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 3 cut(s) 234, 347, 1289
BciVI GTATCC 1 cut(s) 934
BcnI CCSGG 6 cut(s) 303, 488, 553, 571, 572, 792
BcoDI GTCTC 1 cut(s) 1112
BfaI CTAG 1 cut(s) 1316
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 1 cut(s) 934
BglI GCCNNNNNGGC 1 cut(s) 138
Bme1390I CCNGG 9 cut(s) 234, 303, 347, 488, 553, 571, 572, 792, 1289
Bme18I GGWCC 1 cut(s) 1169
BmeT110I CYCGRG 3 cut(s) 289, 328, 570
BmgT120I GGNCC 7 cut(s) 140, 474, 484, 485, 493, 845, 1169
BmiI GGNNCC 5 cut(s) 238, 486, 528, 537, 549
BmrFI CCNGG 9 cut(s) 234, 303, 347, 488, 553, 571, 572, 792, 1289
BmsI GCATC 2 cut(s) 403, 910
BpmI CTGGAG 1 cut(s) 1271
BpuEI CTTGAG 1 cut(s) 1064
BpuMI CCSGG 6 cut(s) 303, 488, 553, 571, 572, 792
BsaAI YACGTR 2 cut(s) 337, 359
BsaJI CCNNGG 9 cut(s) 121, 133, 244, 250, 288, 345, 551, 570, 791
BsaWI WCCGGW 1 cut(s) 529
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bsc4I CCNNNNNNNGG 6 cut(s) 233, 239, 318, 482, 502, 577
Bse118I RCCGGY 3 cut(s) 239, 314, 430
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 2 cut(s) 600, 783
BseBI CCWGG 3 cut(s) 234, 347, 1289
BseDI CCNNGG 9 cut(s) 121, 133, 244, 250, 288, 345, 551, 570, 791
BseGI GGATG 3 cut(s) 684, 781, 922
BseLI CCNNNNNNNGG 6 cut(s) 233, 239, 318, 482, 502, 577
BseMI GCAATG 2 cut(s) 600, 783
BseMII CTCAG 1 cut(s) 1045
BseNI ACTGG 1 cut(s) 184
BseSI GKGCMC 1 cut(s) 488
BseX3I CGGCCG 3 cut(s) 118, 130, 247
BseXI GCAGC 2 cut(s) 352, 619
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 4 cut(s) 41, 129, 135, 1272
Bsh1285I CGRYCG 4 cut(s) 121, 133, 250, 319
BshFI GGCC 9 cut(s) 120, 132, 141, 243, 249, 475, 486, 494, 846
BsiEI CGRYCG 4 cut(s) 121, 133, 250, 319
BsiHKCI CYCGRG 3 cut(s) 289, 328, 570
BslFI GGGAC 2 cut(s) 821, 1049
BslI CCNNNNNNNGG 6 cut(s) 233, 239, 318, 482, 502, 577
BsmAI GTCTC 1 cut(s) 1112
BsmFI GGGAC 2 cut(s) 821, 1049
BsmI GAATGC 1 cut(s) 1311
BsnI GGCC 9 cut(s) 120, 132, 141, 243, 249, 475, 486, 494, 846
BsoBI CYCGRG 3 cut(s) 289, 328, 570
Bsp120I GGGCCC 1 cut(s) 484
Bsp1286I GDGCHC 4 cut(s) 488, 529, 540, 552
Bsp143I GATC 3 cut(s) 294, 1156, 1267
Bsp68I TCGCGA 1 cut(s) 41
BspANI GGCC 9 cut(s) 120, 132, 141, 243, 249, 475, 486, 494, 846
BspCNI CTCAG 1 cut(s) 1044
BspFNI CGCG 4 cut(s) 41, 129, 135, 1272
BspHI TCATGA 1 cut(s) 1327
BspLI GGNNCC 5 cut(s) 238, 486, 528, 537, 549
BspPI GGATC 1 cut(s) 302
BsrBI CCGCTC 2 cut(s) 155, 629
BsrDI GCAATG 2 cut(s) 600, 783
BsrFI RCCGGY 3 cut(s) 239, 314, 430
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 3 cut(s) 239, 314, 430
BssECI CCNNGG 9 cut(s) 121, 133, 244, 250, 288, 345, 551, 570, 791
BssMI GATC 3 cut(s) 294, 1156, 1267
Bst2UI CCWGG 3 cut(s) 234, 347, 1289
Bst6I CTCTTC 7 cut(s) 170, 649, 694, 700, 706, 1197, 1233
BstBAI YACGTR 2 cut(s) 337, 359
BstC8I GCNNGC 4 cut(s) 39, 241, 591, 831
BstDEI CTNAG 2 cut(s) 834, 1031
BstDSI CCRYGG 4 cut(s) 121, 133, 244, 250
BstENI CCTNNNNNAGG 1 cut(s) 231
BstF5I GGATG 3 cut(s) 684, 781, 922
BstFNI CGCG 4 cut(s) 41, 129, 135, 1272
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 790
BstKTI GATC 3 cut(s) 297, 1159, 1270
BstMAI GTCTC 1 cut(s) 1112
BstMBI GATC 3 cut(s) 294, 1156, 1267
BstMCI CGRYCG 4 cut(s) 121, 133, 250, 319
BstMWI GCNNNNNNNGC 8 cut(s) 111, 114, 126, 135, 138, 472, 556, 907
BstNI CCWGG 3 cut(s) 234, 347, 1289
BstSCI CCNGG 9 cut(s) 232, 301, 345, 486, 551, 569, 570, 790, 1287
BstSLI GKGCMC 1 cut(s) 488
BstUI CGCG 4 cut(s) 41, 129, 135, 1272
BstV1I GCAGC 2 cut(s) 352, 619
BstXI CCANNNNNNTGG 1 cut(s) 251
BstZI CGGCCG 3 cut(s) 118, 130, 247
BsuI GTATCC 1 cut(s) 934
BsuRI GGCC 9 cut(s) 120, 132, 141, 243, 249, 475, 486, 494, 846
BtgI CCRYGG 4 cut(s) 121, 133, 244, 250
BtsCI GGATG 3 cut(s) 684, 781, 922
BtsIMutI CAGTG 1 cut(s) 1263
BtuMI TCGCGA 1 cut(s) 41
Cac8I GCNNGC 4 cut(s) 39, 241, 591, 831
CaiI CAGNNNCTG 1 cut(s) 346
CciI TCATGA 1 cut(s) 1327
CciNI GCGGCCGC 1 cut(s) 130
CfoI GCGC 2 cut(s) 17, 790
Cfr10I RCCGGY 3 cut(s) 239, 314, 430
Cfr13I GGNCC 7 cut(s) 140, 474, 484, 485, 493, 845, 1169
Cfr42I CCGCGG 1 cut(s) 136
Cfr9I CCCGGG 1 cut(s) 570
CseI GACGC 2 cut(s) 941, 1046
Csp6I GTAC 2 cut(s) 1162, 1241
CspCI CAANNNNNGTGG 2 cut(s) 1079, 1114
CviAII CATG 2 cut(s) 1111, 1328
CviQI GTAC 2 cut(s) 1162, 1241
DdeI CTNAG 2 cut(s) 834, 1031
DpnI GATC 3 cut(s) 296, 1158, 1269
DpnII GATC 3 cut(s) 294, 1156, 1267
EaeI YGGCCR 4 cut(s) 118, 130, 241, 247
EagI CGGCCG 3 cut(s) 118, 130, 247
Eam1104I CTCTTC 7 cut(s) 170, 649, 694, 700, 706, 1197, 1233
EarI CTCTTC 7 cut(s) 170, 649, 694, 700, 706, 1197, 1233
EciI GGCGGA 4 cut(s) 264, 301, 471, 666
EclXI CGGCCG 3 cut(s) 118, 130, 247
Eco24I GRGCYC 4 cut(s) 488, 529, 540, 552
Eco47I GGWCC 1 cut(s) 1169
Eco52I CGGCCG 3 cut(s) 118, 130, 247
Eco57I CTGAAG 3 cut(s) 385, 870, 891
Eco72I CACGTG 2 cut(s) 337, 359
Eco88I CYCGRG 3 cut(s) 289, 328, 570
EcoNI CCTNNNNNAGG 1 cut(s) 231
EcoRII CCWGG 3 cut(s) 232, 345, 1287
EcoT38I GRGCYC 4 cut(s) 488, 529, 540, 552
FaeI CATG 2 cut(s) 1114, 1331
FalI AAGNNNNNCTT 2 cut(s) 1046, 1078
FaqI GGGAC 2 cut(s) 821, 1049
FatI CATG 2 cut(s) 1110, 1327
FauI CCCGC 3 cut(s) 198, 225, 459
FauNDI CATATG 1 cut(s) 1072
FblI GTMKAC 1 cut(s) 930
FokI GGATG 3 cut(s) 691, 788, 929
FriOI GRGCYC 4 cut(s) 488, 529, 540, 552
FspBI CTAG 1 cut(s) 1316
GlaI GCGC 2 cut(s) 16, 789
GsuI CTGGAG 1 cut(s) 1271
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 9 cut(s) 120, 132, 141, 243, 249, 475, 486, 494, 846
HgaI GACGC 2 cut(s) 941, 1046
HhaI GCGC 2 cut(s) 17, 790
Hin1II CATG 2 cut(s) 1114, 1331
Hin6I GCGC 2 cut(s) 15, 788
HinP1I GCGC 2 cut(s) 15, 788
HincII GTYRAC 2 cut(s) 867, 931
HindII GTYRAC 2 cut(s) 867, 931
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 9 cut(s) 24, 203, 209, 353, 371, 424, 511, 859, 1247
HphI GGTGA 2 cut(s) 595, 632
Hpy166II GTNNAC 4 cut(s) 380, 867, 931, 1263
Hpy188I TCNGA 3 cut(s) 208, 214, 404
Hpy188III TCNNGA 6 cut(s) 40, 66, 1063, 1091, 1316, 1328
Hpy8I GTNNAC 4 cut(s) 380, 867, 931, 1263
Hpy99I CGWCG 2 cut(s) 910, 935
HpyAV CCTTC 9 cut(s) 168, 288, 292, 726, 734, 740, 753, 1108, 1138
HpyCH4IV ACGT 2 cut(s) 336, 358
HpyCH4V TGCA 6 cut(s) 340, 607, 1187, 1220, 1235, 1311
HpyF10VI GCNNNNNNNGC 8 cut(s) 111, 114, 126, 135, 138, 472, 556, 907
HpyF3I CTNAG 2 cut(s) 834, 1031
HpySE526I ACGT 2 cut(s) 336, 358
Hsp92II CATG 2 cut(s) 1114, 1331
HspAI GCGC 2 cut(s) 15, 788
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
KspI CCGCGG 1 cut(s) 136
Kzo9I GATC 3 cut(s) 294, 1156, 1267
LmnI GCTCC 6 cut(s) 160, 236, 532, 535, 547, 626
Lsp1109I GCAGC 2 cut(s) 352, 619
LweI GCATC 2 cut(s) 403, 910
MaeI CTAG 1 cut(s) 1316
MaeII ACGT 2 cut(s) 336, 358
MaeIII GTNAC 3 cut(s) 332, 354, 1180
MalI GATC 3 cut(s) 296, 1158, 1269
MbiI CCGCTC 2 cut(s) 155, 629
MboI GATC 3 cut(s) 294, 1156, 1267
MfeI CAATTG 1 cut(s) 946
MhlI GDGCHC 4 cut(s) 488, 529, 540, 552
MluCI AATT 4 cut(s) 563, 946, 1149, 1345
MlyI GAGTC 2 cut(s) 197, 362
MmeI TCCRAC 2 cut(s) 123, 237
MroNI GCCGGC 1 cut(s) 239
MroXI GAANNNNTTC 2 cut(s) 1058, 1131
MseI TTAA 2 cut(s) 990, 1293
MslI CAYNNNNRTG 1 cut(s) 249
MspA1I CMGCKG 3 cut(s) 105, 135, 1167
MspR9I CCNGG 9 cut(s) 234, 303, 347, 488, 553, 571, 572, 792, 1289
MunI CAATTG 1 cut(s) 946
Mva1269I GAATGC 1 cut(s) 1311
MvaI CCWGG 3 cut(s) 234, 347, 1289
MvnI CGCG 4 cut(s) 41, 129, 135, 1272
MwoI GCNNNNNNNGC 8 cut(s) 111, 114, 126, 135, 138, 472, 556, 907
NaeI GCCGGC 1 cut(s) 241
NciI CCSGG 6 cut(s) 303, 488, 553, 571, 572, 792
NdeI CATATG 1 cut(s) 1072
NdeII GATC 3 cut(s) 294, 1156, 1267
NgoMIV GCCGGC 1 cut(s) 239
NlaIII CATG 2 cut(s) 1114, 1331
NlaIV GGNNCC 5 cut(s) 238, 486, 528, 537, 549
NmuCI GTSAC 2 cut(s) 332, 354
NotI GCGGCCGC 1 cut(s) 130
NruI TCGCGA 1 cut(s) 41
OliI CACNNNNGTG 1 cut(s) 249
PagI TCATGA 1 cut(s) 1327
PctI GAATGC 1 cut(s) 1311
PdiI GCCGGC 1 cut(s) 241
PdmI GAANNNNTTC 2 cut(s) 1058, 1131
PfeI GAWTC 7 cut(s) 24, 209, 371, 424, 511, 859, 1247
PflMI CCANNNNNTGG 1 cut(s) 502
PleI GAGTC 2 cut(s) 197, 361
PmaCI CACGTG 2 cut(s) 337, 359
PmlI CACGTG 2 cut(s) 337, 359
PpsI GAGTC 2 cut(s) 197, 361
Ppu21I YACGTR 2 cut(s) 337, 359
Psp6I CCWGG 3 cut(s) 232, 345, 1287
PspCI CACGTG 2 cut(s) 337, 359
PspGI CCWGG 3 cut(s) 232, 345, 1287
PspN4I GGNNCC 5 cut(s) 238, 486, 528, 537, 549
PspOMI GGGCCC 1 cut(s) 484
PspPI GGNCC 7 cut(s) 140, 474, 484, 485, 493, 845, 1169
PstNI CAGNNNCTG 1 cut(s) 346
RruI TCGCGA 1 cut(s) 41
RsaI GTAC 2 cut(s) 1163, 1242
RsaNI GTAC 2 cut(s) 1162, 1241
RseI CAYNNNNRTG 1 cut(s) 249
SacII CCGCGG 1 cut(s) 136
SalI GTCGAC 1 cut(s) 929
SaqAI TTAA 2 cut(s) 990, 1293
Sau3AI GATC 3 cut(s) 294, 1156, 1267
Sau96I GGNCC 7 cut(s) 140, 474, 484, 485, 493, 845, 1169
SchI GAGTC 2 cut(s) 197, 362
ScrFI CCNGG 9 cut(s) 234, 303, 347, 488, 553, 571, 572, 792, 1289
SduI GDGCHC 4 cut(s) 488, 529, 540, 552
SfaNI GCATC 2 cut(s) 403, 910
SfiI GGCCNNNNNGGCC 1 cut(s) 138
Sfr303I CCGCGG 1 cut(s) 136
SgrBI CCGCGG 1 cut(s) 136
SinI GGWCC 1 cut(s) 1169
SmaI CCCGGG 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 1043
SmoI CTYRAG 1 cut(s) 1043
Sse9I AATT 4 cut(s) 563, 946, 1149, 1345
SspMI CTAG 1 cut(s) 1316
StyD4I CCNGG 9 cut(s) 232, 301, 345, 486, 551, 569, 570, 790, 1287
TaiI ACGT 2 cut(s) 339, 361
TaqI TCGA 2 cut(s) 930, 1155
TasI AATT 4 cut(s) 563, 946, 1149, 1345
TatI WGTACW 1 cut(s) 1161
TfiI GAWTC 7 cut(s) 24, 209, 371, 424, 511, 859, 1247
Tru1I TTAA 2 cut(s) 990, 1293
Tru9I TTAA 2 cut(s) 990, 1293
TscAI CASTG 1 cut(s) 1270
TseFI GTSAC 2 cut(s) 332, 354
TseI GCWGC 2 cut(s) 340, 607
Tsp45I GTSAC 2 cut(s) 332, 354
TspDTI ATGAA 5 cut(s) 872, 1026, 1067, 1127, 1344
TspGWI ACGGA 2 cut(s) 72, 894
TspMI CCCGGG 1 cut(s) 570
TspRI CASTG 1 cut(s) 1270
Van91I CCANNNNNTGG 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 1169
XagI CCTNNNNNAGG 1 cut(s) 231
XbaI TCTAGA 1 cut(s) 1315
XmaI CCCGGG 1 cut(s) 570
XmiI GTMKAC 1 cut(s) 930
XmnI GAANNNNTTC 2 cut(s) 1058, 1131
XspI CTAG 1 cut(s) 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.