Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002343.1

Orthogroup ID

OG0007722

Physical Location & Seq

Genomic Coordinates Forward (+)

215090 .. 218037

Gene Structure 2948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002343.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atgagaggaggaagtaccataggaatcggcagaaagatcgcgaacccatcaagctccatttccactcccgttttccacttcctccaacagcggcggcggctccttctctcttcaactacctcgccgaccagttcccgcctcaaccagactccgaatccgactggcccccacctctcccgggagccggccgcggcaaacccttatcccaacctccgccttcctttgcctcggggatcaaacccagttcggccgccggtcggggccatccggacgggaagatgcggaggagaatctaccggcgggtttgatgacggcgttgggcggaacgggttggtggaggcccatagtgtggaggagaatgggcagattggggttccggtggagccccagagggagcccaggaagccgaaattgacccgggaagaggtggtgaagcaggcaatggggatattgcagcagggaggcggtgagggagcggaggttgatggtggtggtgggggaagagggagaggaggagagagagggatgagcgggagaggaggaagaagaggaagagggagagggagaggagggaggggaaggagagaaggagaaggagataggagaaggcaaggggatggggatggggatggcggcattgcgctggggctctatcttggggacaatgccgatggggagaagctggctaagaggcttggcccggaagttatgaatcagttgactgaagcatttgaggatatgagtaatcaagtgcttccgtcgcctttgggtgatgcttatgtcgatgcattggataccaattgtatgattgagtttgggccggagtatcttatgggggagtttaatcaaaacccagatattgatgaaaaaccgcagactaagagaacgaaggtggatattgctgctggaggatggcattctactgcactaacagatgatggagaggtgatgattactctcactctgctaaatattagctatgaggtttttcatttgcatgagcgtaatctattggatgctgttattagtctaaaggtggtgtatggatggggccgaggggaacatggtagacttggtttcggcgagaatgataagagcagtaaaatggtccagcaaaaggttcatcttttagatggggaggaaatcgtgcaagtaccaattatattgttttccttgcaaatcctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

395

Amino Acids

42.42

Weight (kDa)

6.74

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53645
fragaria_vesca	FvH4_3g14000 FvH4_3g14000
malus_domestica	MD05G1239100.v1.1 MD10G1217100.v1.1
prunus_persica	Prupe.4G127000_v2.0.a1
pyrus_communis	pycom05g21540 pycom10g18320
rosa_chinensis	RchiOBHm_Chr5g0023231 RchiOBHm_Chr5g0023281
rosa_laevigata	RLG00000032711
rosa_multiflora	Rmu_sc0002343.1_g000043 Rmu_sc0009954.1_g000001 Rmu_sc0009954.1_g000004 Rmu_sc0011343.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056100
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164300 Rh5BG163800 Rh5CG179000 Rh5DG165600 Rh5DG266700
rosa_wichuraiana	Rw5G014840 Rw7G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccBSI	CCGCTC	2 cut(s)	476, 531
AccI	GTMKAC	1 cut(s)	1069
AccII	CGCG	2 cut(s)	41, 191
AccIII	TCCGGA	1 cut(s)	267
AclWI	GGATC	1 cut(s)	241
AcoI	YGGCCR	2 cut(s)	186, 248
AcuI	CTGAAG	1 cut(s)	744
AfaI	GTAC	2 cut(s)	16, 1155
AfiI	CCNNNNNNNGG	6 cut(s)	178, 184, 257, 349, 424, 1117
AgsI	TTSAA	1 cut(s)	114
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	3 cut(s)	54, 682, 978
AluI	AGCT	3 cut(s)	54, 682, 978
AlwI	GGATC	1 cut(s)	241
Ama87I	CYCGRG	3 cut(s)	177, 228, 417
Aor13HI	TCCGGA	1 cut(s)	267
AoxI	GGCC	8 cut(s)	163, 186, 248, 261, 339, 697, 818, 1051
ApeKI	GCWGC	2 cut(s)	454, 902
AspLEI	GCGC	1 cut(s)	643
AspS9I	GGNCC	7 cut(s)	164, 261, 340, 698, 818, 1051, 1108
AsuC2I	CCSGG	5 cut(s)	178, 179, 418, 419, 701
AsuHPI	GGTGA	4 cut(s)	442, 479, 782, 958
AvaI	CYCGRG	3 cut(s)	177, 228, 417
AvaII	GGWCC	1 cut(s)	1108
BanII	GRGCYC	3 cut(s)	387, 399, 651
BbvI	GCAGC	2 cut(s)	466, 889
BceAI	ACGGC	1 cut(s)	328
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	1 cut(s)	400
BciVI	GTATCC	1 cut(s)	787
BcnI	CCSGG	5 cut(s)	178, 179, 418, 419, 701
BfuI	GTATCC	1 cut(s)	787
BisI	GCNGC	9 cut(s)	92, 95, 98, 189, 192, 251, 455, 634, 903
BlsI	GCNGC	9 cut(s)	93, 96, 99, 190, 193, 252, 456, 635, 904
Bme1390I	CCNGG	6 cut(s)	178, 179, 400, 418, 419, 701
Bme18I	GGWCC	1 cut(s)	1108
BmeT110I	CYCGRG	3 cut(s)	177, 228, 417
BmgT120I	GGNCC	7 cut(s)	164, 261, 340, 698, 818, 1051, 1108
BmiI	GGNNCC	8 cut(s)	101, 166, 183, 262, 375, 384, 396, 1052
BmrFI	CCNGG	6 cut(s)	178, 179, 400, 418, 419, 701
BmrI	ACTGGG	1 cut(s)	236
BmsI	GCATC	4 cut(s)	269, 763, 775, 1006
BmuI	ACTGGG	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	927
BpuMI	CCSGG	5 cut(s)	178, 179, 418, 419, 701
BsaJI	CCNNGG	6 cut(s)	177, 189, 227, 398, 417, 1054
BsaWI	WCCGGW	2 cut(s)	267, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	6 cut(s)	178, 184, 257, 349, 424, 1117
Bse118I	RCCGGY	3 cut(s)	184, 253, 296
Bse1I	ACTGG	3 cut(s)	129, 166, 242
Bse3DI	GCAATG	2 cut(s)	447, 636
BseAI	TCCGGA	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	6 cut(s)	177, 189, 227, 398, 417, 1054
BseGI	GGATG	8 cut(s)	264, 531, 622, 628, 634, 917, 1021, 1052
BseLI	CCNNNNNNNGG	6 cut(s)	178, 184, 257, 349, 424, 1117
BseMI	GCAATG	2 cut(s)	447, 636
BseNI	ACTGG	3 cut(s)	129, 166, 242
BseRI	GAGGAG	7 cut(s)	21, 300, 368, 525, 528, 552, 582
BseX3I	CGGCCG	2 cut(s)	186, 248
BseXI	GCAGC	2 cut(s)	466, 889
BseYI	CCCAGC	1 cut(s)	643
BsgI	GTGCAG	1 cut(s)	909
Bsh1236I	CGCG	2 cut(s)	41, 191
Bsh1285I	CGRYCG	3 cut(s)	189, 251, 258
BshFI	GGCC	8 cut(s)	165, 188, 250, 263, 341, 699, 820, 1053
BsiEI	CGRYCG	3 cut(s)	189, 251, 258
BsiHKCI	CYCGRG	3 cut(s)	177, 228, 417
BsiSI	CCGG	9 cut(s)	178, 185, 254, 268, 297, 377, 418, 701, 821
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	6 cut(s)	178, 184, 257, 349, 424, 1117
BsmFI	GGGAC	1 cut(s)	674
BsmI	GAATGC	1 cut(s)	916
BsnI	GGCC	8 cut(s)	165, 188, 250, 263, 341, 699, 820, 1053
BsoBI	CYCGRG	3 cut(s)	177, 228, 417
Bsp1286I	GDGCHC	3 cut(s)	387, 399, 651
Bsp13I	TCCGGA	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	36, 233
Bsp68I	TCGCGA	1 cut(s)	41
BspANI	GGCC	8 cut(s)	165, 188, 250, 263, 341, 699, 820, 1053
BspEI	TCCGGA	1 cut(s)	267
BspFNI	CGCG	2 cut(s)	41, 191
BspLI	GGNNCC	8 cut(s)	101, 166, 183, 262, 375, 384, 396, 1052
BspPI	GGATC	1 cut(s)	241
BsrBI	CCGCTC	2 cut(s)	476, 531
BsrDI	GCAATG	2 cut(s)	447, 636
BsrFI	RCCGGY	3 cut(s)	184, 253, 296
BsrI	ACTGG	3 cut(s)	129, 166, 242
BssAI	RCCGGY	3 cut(s)	184, 253, 296
BssECI	CCNNGG	6 cut(s)	177, 189, 227, 398, 417, 1054
BssMI	GATC	2 cut(s)	36, 233
Bst2UI	CCWGG	1 cut(s)	400
Bst6I	CTCTTC	5 cut(s)	115, 417, 496, 541, 547
BstC8I	GCNNGC	3 cut(s)	186, 438, 684
BstDEI	CTNAG	2 cut(s)	687, 879
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	8 cut(s)	264, 531, 622, 628, 634, 917, 1021, 1052
BstFNI	CGCG	2 cut(s)	41, 191
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	2 cut(s)	39, 236
BstMBI	GATC	2 cut(s)	36, 233
BstMCI	CGRYCG	3 cut(s)	189, 251, 258
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 403, 760
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	6 cut(s)	176, 177, 398, 416, 417, 699
BstUI	CGCG	2 cut(s)	41, 191
BstV1I	GCAGC	2 cut(s)	466, 889
BstZI	CGGCCG	2 cut(s)	186, 248
BsuI	GTATCC	1 cut(s)	787
BsuRI	GGCC	8 cut(s)	165, 188, 250, 263, 341, 699, 820, 1053
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	8 cut(s)	264, 531, 622, 628, 634, 917, 1021, 1052
BtuMI	TCGCGA	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	186, 438, 684
CfoI	GCGC	1 cut(s)	643
Cfr10I	RCCGGY	3 cut(s)	184, 253, 296
Cfr13I	GGNCC	7 cut(s)	164, 261, 340, 698, 818, 1051, 1108
Cfr42I	CCGCGG	1 cut(s)	192
Cfr9I	CCCGGG	2 cut(s)	177, 417
Csp6I	GTAC	2 cut(s)	15, 1154
CviAII	CATG	2 cut(s)	998, 1064
CviQI	GTAC	2 cut(s)	15, 1154
DdeI	CTNAG	2 cut(s)	687, 879
DpnI	GATC	2 cut(s)	38, 235
DpnII	GATC	2 cut(s)	36, 233
EaeI	YGGCCR	2 cut(s)	186, 248
EagI	CGGCCG	2 cut(s)	186, 248
Eam1104I	CTCTTC	5 cut(s)	115, 417, 496, 541, 547
EarI	CTCTTC	5 cut(s)	115, 417, 496, 541, 547
EciI	GGCGGA	2 cut(s)	203, 337
EclXI	CGGCCG	2 cut(s)	186, 248
Eco24I	GRGCYC	3 cut(s)	387, 399, 651
Eco47I	GGWCC	1 cut(s)	1108
Eco52I	CGGCCG	2 cut(s)	186, 248
Eco57I	CTGAAG	1 cut(s)	744
Eco88I	CYCGRG	3 cut(s)	177, 228, 417
EcoRII	CCWGG	1 cut(s)	398
EcoT22I	ATGCAT	1 cut(s)	790
EcoT38I	GRGCYC	3 cut(s)	387, 399, 651
FaeI	CATG	2 cut(s)	1001, 1067
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	2 cut(s)	997, 1063
FauI	CCCGC	3 cut(s)	143, 293, 524
FblI	GTMKAC	1 cut(s)	1069
Fnu4HI	GCNGC	9 cut(s)	92, 95, 98, 189, 192, 251, 455, 634, 903
FokI	GGATG	8 cut(s)	251, 538, 629, 635, 641, 924, 1028, 1059
FriOI	GRGCYC	3 cut(s)	387, 399, 651
Fsp4HI	GCNGC	9 cut(s)	92, 95, 98, 189, 192, 251, 455, 634, 903
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	9 cut(s)	92, 95, 98, 189, 192, 251, 455, 634, 903
GsaI	CCCAGC	1 cut(s)	647
GsuI	CTGGAG	1 cut(s)	927
HaeIII	GGCC	8 cut(s)	165, 188, 250, 263, 341, 699, 820, 1053
HapII	CCGG	9 cut(s)	178, 185, 254, 268, 297, 377, 418, 701, 821
HhaI	GCGC	1 cut(s)	643
Hin1II	CATG	2 cut(s)	1001, 1067
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HinfI	GANTC	5 cut(s)	24, 148, 154, 290, 712
HpaII	CCGG	9 cut(s)	178, 185, 254, 268, 297, 377, 418, 701, 821
HphI	GGTGA	4 cut(s)	442, 479, 782, 958
Hpy166II	GTNNAC	2 cut(s)	720, 1070
Hpy188I	TCNGA	3 cut(s)	153, 159, 1187
Hpy188III	TCNNGA	2 cut(s)	40, 268
Hpy8I	GTNNAC	2 cut(s)	720, 1070
Hpy99I	CGWCG	1 cut(s)	763
HpyAV	CCTTC	7 cut(s)	113, 227, 573, 581, 587, 600, 883
HpyCH4V	TGCA	6 cut(s)	454, 788, 926, 997, 1150, 1177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 403, 760
HpyF3I	CTNAG	2 cut(s)	687, 879
Hsp92II	CATG	2 cut(s)	1001, 1067
HspAI	GCGC	1 cut(s)	641
Kpn2I	TCCGGA	1 cut(s)	267
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
KspI	CCGCGG	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	36, 233
LmnI	GCTCC	6 cut(s)	59, 105, 181, 382, 394, 473
Lsp1109I	GCAGC	2 cut(s)	466, 889
LweI	GCATC	4 cut(s)	269, 763, 775, 1006
MalI	GATC	2 cut(s)	38, 235
MbiI	CCGCTC	2 cut(s)	476, 531
MboI	GATC	2 cut(s)	36, 233
MboII	GAAGA	7 cut(s)	102, 288, 434, 513, 555, 558, 564
MfeI	CAATTG	1 cut(s)	799
MhlI	GDGCHC	3 cut(s)	387, 399, 651
MluCI	AATT	3 cut(s)	410, 799, 1158
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	2 cut(s)	109, 182
Mph1103I	ATGCAT	1 cut(s)	790
MroI	TCCGGA	1 cut(s)	267
MroNI	GCCGGC	1 cut(s)	184
MseI	TTAA	1 cut(s)	843
MslI	CAYNNNNRTG	1 cut(s)	996
MspA1I	CMGCKG	2 cut(s)	91, 191
MspI	CCGG	9 cut(s)	178, 185, 254, 268, 297, 377, 418, 701, 821
MspR9I	CCNGG	6 cut(s)	178, 179, 400, 418, 419, 701
MunI	CAATTG	1 cut(s)	799
Mva1269I	GAATGC	1 cut(s)	916
MvaI	CCWGG	1 cut(s)	400
MvnI	CGCG	2 cut(s)	41, 191
MwoI	GCNNNNNNNGC	3 cut(s)	97, 403, 760
NaeI	GCCGGC	1 cut(s)	186
NciI	CCSGG	5 cut(s)	178, 179, 418, 419, 701
NdeII	GATC	2 cut(s)	36, 233
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	1001, 1067
NlaIV	GGNNCC	8 cut(s)	101, 166, 183, 262, 375, 384, 396, 1052
NmeAIII	GCCGAG	1 cut(s)	1079
NruI	TCGCGA	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	790
PctI	GAATGC	1 cut(s)	916
PdiI	GCCGGC	1 cut(s)	186
PfeI	GAWTC	4 cut(s)	24, 154, 290, 712
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	9 cut(s)	93, 96, 99, 190, 193, 252, 456, 635, 904
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	398
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	8 cut(s)	101, 166, 183, 262, 375, 384, 396, 1052
PspPI	GGNCC	7 cut(s)	164, 261, 340, 698, 818, 1051, 1108
RruI	TCGCGA	1 cut(s)	41
RsaI	GTAC	2 cut(s)	16, 1155
RsaNI	GTAC	2 cut(s)	15, 1154
RseI	CAYNNNNRTG	1 cut(s)	996
SacII	CCGCGG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	843
SatI	GCNGC	9 cut(s)	92, 95, 98, 189, 192, 251, 455, 634, 903
Sau3AI	GATC	2 cut(s)	36, 233
Sau96I	GGNCC	7 cut(s)	164, 261, 340, 698, 818, 1051, 1108
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	6 cut(s)	178, 179, 400, 418, 419, 701
SduI	GDGCHC	3 cut(s)	387, 399, 651
SfaNI	GCATC	4 cut(s)	269, 763, 775, 1006
Sfr303I	CCGCGG	1 cut(s)	192
SgrBI	CCGCGG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	1108
SmaI	CCCGGG	2 cut(s)	179, 419
SmiMI	CAYNNNNRTG	1 cut(s)	996
Sse9I	AATT	3 cut(s)	410, 799, 1158
SspI	AATATT	1 cut(s)	973
StyD4I	CCNGG	6 cut(s)	176, 177, 398, 416, 417, 699
TaqI	TCGA	1 cut(s)	783
TasI	AATT	3 cut(s)	410, 799, 1158
TauI	GCSGC	7 cut(s)	94, 97, 100, 191, 194, 253, 636
TfiI	GAWTC	4 cut(s)	24, 154, 290, 712
Tru1I	TTAA	1 cut(s)	843
Tru9I	TTAA	1 cut(s)	843
TseI	GCWGC	2 cut(s)	454, 902
TspDTI	ATGAA	4 cut(s)	725, 879, 980, 1112
TspGWI	ACGGA	1 cut(s)	747
TspMI	CCCGGG	2 cut(s)	177, 417
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	1108
XmaI	CCCGGG	2 cut(s)	177, 417
XmiI	GTMKAC	1 cut(s)	1069
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.