Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007722

Physical Location & Seq

Genomic Coordinates Reverse (-)

34579285 .. 34582438

Gene Structure 3154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAGAGGAGGAAGCGCCATAGGAATCGGCAGAAAGATCGCGAACCCATCAAGCTCCATTTCCACTCCCTTCCCGCCTCAACCAGACTCCGAATCCGACTGGCCCTCACCTCTCCCAGGAGCCGGCCACGGCCGCGGCAAACCCTTATCCCAACCTCCGCCTTCCTTTGCCTCGGGGATCAAACCCAGTTCGGCCGCCGGTCGGGGCCATCCGGGTCACGTGCAGCCCCCGTCAGAGTCACGTGAGGGAGATGATTCGGGTTTACCCAAGAAGCCCTTGTTCTTCAGACGGGAAGATGCGGAGGAGAATCTACCGGCGGGTTTGATGACGGCTGTGGAGGAGAATGGGCAGATTGGGGTTCCGGTGGAGCCCCAGAGGGAGCCCAGGAAGCCGAAATTGACCCGGGAAGAGGCGGTGAAGCAGGCAATGGGGATATTGCAGCAGGGAGGCGGTGAGGGAGCGGAGGTTGATGGTGGTGGTGGTGGAAGAGGGAGAGGAGGAGAGAGAGGGATGAGAGGGAGAGGAGGAAGAAGAGGAAGAGGGAGAGGGAGAGGAGGGAGGGGAAGGAGAGAAGGAGAAGGAGATAGGAGAAGGCAAGGGGATGGGGATGGCGGCATTGCGCCGGGGCTCTATCTTGGGGACAATGCCGATGGGGAGAAGCTGGCTAAGAGGCTTGGCCCGGAAGTTATGAATCAGTTGACTGAAGCATTTGAGGATATGAGTAATCAAGTGCTTCCGTCGCCTTTGGGTGATGCTTATGTCGATGCATTGGATACCAATTGTATGATTGAGTTTGAGCCGGAGTATCTTATGGGGGAGTTTAATCAAAACCCAGATATTGATGAAAAACAGCAGACTAAGAGAACAAAGTGTAATCTATTGGATGCTGTTATTAGTCTAAAGGTGGTTAGTCTTACTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

32.53

Weight (kDa)

6.07

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53645
fragaria_vesca	FvH4_3g14000 FvH4_3g14000
malus_domestica	MD05G1239100.v1.1 MD10G1217100.v1.1
prunus_persica	Prupe.4G127000_v2.0.a1
pyrus_communis	pycom05g21540 pycom10g18320
rosa_chinensis	RchiOBHm_Chr5g0023231 RchiOBHm_Chr5g0023281
rosa_laevigata	RLG00000032711
rosa_multiflora	Rmu_sc0002343.1_g000043 Rmu_sc0009954.1_g000001 Rmu_sc0009954.1_g000004 Rmu_sc0011343.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056100
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164300 Rh5BG163800 Rh5CG179000 Rh5DG165600 Rh5DG266700
rosa_wichuraiana	Rw5G014840 Rw7G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	461
AccII	CGCG	2 cut(s)	41, 135
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	3 cut(s)	124, 130, 192
AcuI	CTGAAG	2 cut(s)	268, 723
AcvI	CACGTG	2 cut(s)	220, 242
AfiI	CCNNNNNNNGG	4 cut(s)	116, 122, 201, 409
AjnI	CCWGG	2 cut(s)	115, 383
AluBI	AGCT	2 cut(s)	54, 661
AluI	AGCT	2 cut(s)	54, 661
AlwI	GGATC	1 cut(s)	185
Ama87I	CYCGRG	2 cut(s)	172, 402
AoxI	GGCC	6 cut(s)	101, 124, 130, 192, 205, 676
ApeKI	GCWGC	2 cut(s)	223, 439
AspLEI	GCGC	2 cut(s)	17, 622
AspS9I	GGNCC	3 cut(s)	102, 205, 677
AsuC2I	CCSGG	5 cut(s)	213, 403, 404, 624, 680
AsuHPI	GGTGA	4 cut(s)	99, 427, 464, 761
AvaI	CYCGRG	2 cut(s)	172, 402
BanII	GRGCYC	3 cut(s)	372, 384, 630
BbrPI	CACGTG	2 cut(s)	220, 242
BbvI	GCAGC	2 cut(s)	235, 451
BccI	CCATC	6 cut(s)	55, 216, 464, 596, 602, 644
BceAI	ACGGC	2 cut(s)	145, 345
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	2 cut(s)	117, 385
BciVI	GTATCC	1 cut(s)	766
BcnI	CCSGG	5 cut(s)	213, 403, 404, 624, 680
BfmI	CTRYAG	1 cut(s)	920
BfoI	RGCGCY	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	766
BisI	GCNGC	6 cut(s)	133, 136, 195, 224, 440, 613
BlsI	GCNGC	6 cut(s)	134, 137, 196, 225, 441, 614
Bme1390I	CCNGG	7 cut(s)	117, 213, 385, 403, 404, 624, 680
BmeT110I	CYCGRG	2 cut(s)	172, 402
BmgT120I	GGNCC	3 cut(s)	102, 205, 677
BmiI	GGNNCC	5 cut(s)	121, 206, 360, 369, 381
BmrFI	CCNGG	7 cut(s)	117, 213, 385, 403, 404, 624, 680
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	4 cut(s)	286, 742, 754, 874
BmuI	ACTGGG	1 cut(s)	180
BpuMI	CCSGG	5 cut(s)	213, 403, 404, 624, 680
BsaAI	YACGTR	2 cut(s)	220, 242
BsaJI	CCNNGG	7 cut(s)	115, 127, 133, 171, 383, 402, 623
BsaWI	WCCGGW	1 cut(s)	361
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 122, 201, 409
Bse118I	RCCGGY	3 cut(s)	122, 197, 313
Bse1I	ACTGG	2 cut(s)	104, 186
Bse3DI	GCAATG	2 cut(s)	432, 615
BseBI	CCWGG	2 cut(s)	117, 385
BseDI	CCNNGG	7 cut(s)	115, 127, 133, 171, 383, 402, 623
BseGI	GGATG	5 cut(s)	208, 516, 607, 613, 889
BseLI	CCNNNNNNNGG	4 cut(s)	116, 122, 201, 409
BseMI	GCAATG	2 cut(s)	432, 615
BseNI	ACTGG	2 cut(s)	104, 186
BseRI	GAGGAG	7 cut(s)	21, 317, 353, 510, 513, 537, 567
BseX3I	CGGCCG	2 cut(s)	130, 192
BseXI	GCAGC	2 cut(s)	235, 451
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	41, 135
Bsh1285I	CGRYCG	3 cut(s)	133, 195, 202
BshFI	GGCC	6 cut(s)	103, 126, 132, 194, 207, 678
BsiEI	CGRYCG	3 cut(s)	133, 195, 202
BsiHKCI	CYCGRG	2 cut(s)	172, 402
BsiSI	CCGG	9 cut(s)	123, 198, 212, 314, 362, 403, 623, 680, 800
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	4 cut(s)	116, 122, 201, 409
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	6 cut(s)	103, 126, 132, 194, 207, 678
BsoBI	CYCGRG	2 cut(s)	172, 402
Bsp1286I	GDGCHC	3 cut(s)	372, 384, 630
Bsp143I	GATC	2 cut(s)	36, 177
Bsp68I	TCGCGA	1 cut(s)	41
BspANI	GGCC	6 cut(s)	103, 126, 132, 194, 207, 678
BspFNI	CGCG	2 cut(s)	41, 135
BspLI	GGNNCC	5 cut(s)	121, 206, 360, 369, 381
BspPI	GGATC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	461
BsrDI	GCAATG	2 cut(s)	432, 615
BsrFI	RCCGGY	3 cut(s)	122, 197, 313
BsrI	ACTGG	2 cut(s)	104, 186
BssAI	RCCGGY	3 cut(s)	122, 197, 313
BssECI	CCNNGG	7 cut(s)	115, 127, 133, 171, 383, 402, 623
BssMI	GATC	2 cut(s)	36, 177
Bst2UI	CCWGG	2 cut(s)	117, 385
Bst6I	CTCTTC	4 cut(s)	402, 481, 526, 532
BstBAI	YACGTR	2 cut(s)	220, 242
BstC8I	GCNNGC	3 cut(s)	124, 423, 663
BstDEI	CTNAG	2 cut(s)	666, 858
BstDSI	CCRYGG	2 cut(s)	127, 133
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	5 cut(s)	208, 516, 607, 613, 889
BstFNI	CGCG	2 cut(s)	41, 135
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 622
BstKTI	GATC	2 cut(s)	39, 180
BstMBI	GATC	2 cut(s)	36, 177
BstMCI	CGRYCG	3 cut(s)	133, 195, 202
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 388, 739
BstNI	CCWGG	2 cut(s)	117, 385
BstSCI	CCNGG	7 cut(s)	115, 211, 383, 401, 402, 622, 678
BstSFI	CTRYAG	1 cut(s)	920
BstUI	CGCG	2 cut(s)	41, 135
BstV1I	GCAGC	2 cut(s)	235, 451
BstZI	CGGCCG	2 cut(s)	130, 192
BsuI	GTATCC	1 cut(s)	766
BsuRI	GGCC	6 cut(s)	103, 126, 132, 194, 207, 678
BtgI	CCRYGG	2 cut(s)	127, 133
BtsCI	GGATG	5 cut(s)	208, 516, 607, 613, 889
BtuMI	TCGCGA	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	124, 423, 663
CfoI	GCGC	2 cut(s)	17, 622
Cfr10I	RCCGGY	3 cut(s)	122, 197, 313
Cfr13I	GGNCC	3 cut(s)	102, 205, 677
Cfr42I	CCGCGG	1 cut(s)	136
Cfr9I	CCCGGG	1 cut(s)	402
DdeI	CTNAG	2 cut(s)	666, 858
DpnI	GATC	2 cut(s)	38, 179
DpnII	GATC	2 cut(s)	36, 177
EaeI	YGGCCR	3 cut(s)	124, 130, 192
EagI	CGGCCG	2 cut(s)	130, 192
Eam1104I	CTCTTC	4 cut(s)	402, 481, 526, 532
EarI	CTCTTC	4 cut(s)	402, 481, 526, 532
EciI	GGCGGA	1 cut(s)	147
EclXI	CGGCCG	2 cut(s)	130, 192
Eco24I	GRGCYC	3 cut(s)	372, 384, 630
Eco52I	CGGCCG	2 cut(s)	130, 192
Eco57I	CTGAAG	2 cut(s)	268, 723
Eco72I	CACGTG	2 cut(s)	220, 242
Eco88I	CYCGRG	2 cut(s)	172, 402
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	115, 383
EcoT22I	ATGCAT	1 cut(s)	769
EcoT38I	GRGCYC	3 cut(s)	372, 384, 630
FaiI	YATR	7 cut(s)	20, 689, 719, 759, 785, 812, 922
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	1 cut(s)	653
FauI	CCCGC	2 cut(s)	81, 310
Fnu4HI	GCNGC	6 cut(s)	133, 136, 195, 224, 440, 613
FokI	GGATG	5 cut(s)	195, 523, 614, 620, 896
FriOI	GRGCYC	3 cut(s)	372, 384, 630
Fsp4HI	GCNGC	6 cut(s)	133, 136, 195, 224, 440, 613
GlaI	GCGC	2 cut(s)	16, 621
GluI	GCNGC	6 cut(s)	133, 136, 195, 224, 440, 613
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	6 cut(s)	103, 126, 132, 194, 207, 678
HapII	CCGG	9 cut(s)	123, 198, 212, 314, 362, 403, 623, 680, 800
HhaI	GCGC	2 cut(s)	17, 622
Hin6I	GCGC	2 cut(s)	15, 620
HinP1I	GCGC	2 cut(s)	15, 620
HincII	GTYRAC	1 cut(s)	699
HindII	GTYRAC	1 cut(s)	699
HinfI	GANTC	7 cut(s)	24, 86, 92, 236, 254, 307, 691
HpaII	CCGG	9 cut(s)	123, 198, 212, 314, 362, 403, 623, 680, 800
HphI	GGTGA	4 cut(s)	99, 427, 464, 761
Hpy166II	GTNNAC	2 cut(s)	263, 699
Hpy188I	TCNGA	4 cut(s)	91, 97, 235, 287
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	2 cut(s)	263, 699
Hpy99I	CGWCG	1 cut(s)	742
HpyAV	CCTTC	6 cut(s)	79, 171, 558, 566, 572, 585
HpyCH4IV	ACGT	2 cut(s)	219, 241
HpyCH4V	TGCA	3 cut(s)	223, 439, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 388, 739
HpyF3I	CTNAG	2 cut(s)	666, 858
HpySE526I	ACGT	2 cut(s)	219, 241
HspAI	GCGC	2 cut(s)	15, 620
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
KspI	CCGCGG	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	36, 177
LmnI	GCTCC	5 cut(s)	59, 119, 367, 379, 458
Lsp1109I	GCAGC	2 cut(s)	235, 451
LweI	GCATC	4 cut(s)	286, 742, 754, 874
MaeII	ACGT	2 cut(s)	219, 241
MaeIII	GTNAC	2 cut(s)	215, 237
MalI	GATC	2 cut(s)	38, 179
MbiI	CCGCTC	1 cut(s)	461
MboI	GATC	2 cut(s)	36, 177
MboII	GAAGA	7 cut(s)	274, 305, 419, 498, 540, 543, 549
MfeI	CAATTG	1 cut(s)	778
MhlI	GDGCHC	3 cut(s)	372, 384, 630
MluCI	AATT	2 cut(s)	395, 778
MlyI	GAGTC	2 cut(s)	80, 245
MmeI	TCCRAC	1 cut(s)	120
Mph1103I	ATGCAT	1 cut(s)	769
MroNI	GCCGGC	1 cut(s)	122
MseI	TTAA	1 cut(s)	822
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	9 cut(s)	123, 198, 212, 314, 362, 403, 623, 680, 800
MspR9I	CCNGG	7 cut(s)	117, 213, 385, 403, 404, 624, 680
MunI	CAATTG	1 cut(s)	778
MvaI	CCWGG	2 cut(s)	117, 385
MvnI	CGCG	2 cut(s)	41, 135
MwoI	GCNNNNNNNGC	3 cut(s)	132, 388, 739
NaeI	GCCGGC	1 cut(s)	124
NciI	CCSGG	5 cut(s)	213, 403, 404, 624, 680
NdeII	GATC	2 cut(s)	36, 177
NgoMIV	GCCGGC	1 cut(s)	122
NlaIV	GGNNCC	5 cut(s)	121, 206, 360, 369, 381
NmuCI	GTSAC	2 cut(s)	215, 237
NruI	TCGCGA	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	769
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	5 cut(s)	24, 92, 254, 307, 691
PkrI	GCNGC	6 cut(s)	134, 137, 196, 225, 441, 614
PleI	GAGTC	2 cut(s)	80, 244
PmaCI	CACGTG	2 cut(s)	220, 242
PmlI	CACGTG	2 cut(s)	220, 242
PpsI	GAGTC	2 cut(s)	80, 244
Ppu21I	YACGTR	2 cut(s)	220, 242
Psp6I	CCWGG	2 cut(s)	115, 383
PspCI	CACGTG	2 cut(s)	220, 242
PspGI	CCWGG	2 cut(s)	115, 383
PspN4I	GGNNCC	5 cut(s)	121, 206, 360, 369, 381
PspPI	GGNCC	3 cut(s)	102, 205, 677
RruI	TCGCGA	1 cut(s)	41
SacII	CCGCGG	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	822
SatI	GCNGC	6 cut(s)	133, 136, 195, 224, 440, 613
Sau3AI	GATC	2 cut(s)	36, 177
Sau96I	GGNCC	3 cut(s)	102, 205, 677
SchI	GAGTC	2 cut(s)	80, 245
ScrFI	CCNGG	7 cut(s)	117, 213, 385, 403, 404, 624, 680
SduI	GDGCHC	3 cut(s)	372, 384, 630
SetI	ASST	8 cut(s)	56, 112, 157, 222, 244, 468, 663, 906
SfaNI	GCATC	4 cut(s)	286, 742, 754, 874
SfcI	CTRYAG	1 cut(s)	920
Sfr303I	CCGCGG	1 cut(s)	136
SgrBI	CCGCGG	1 cut(s)	136
SmaI	CCCGGG	1 cut(s)	404
Sse9I	AATT	2 cut(s)	395, 778
StyD4I	CCNGG	7 cut(s)	115, 211, 383, 401, 402, 622, 678
TaiI	ACGT	2 cut(s)	222, 244
TaqI	TCGA	1 cut(s)	762
TasI	AATT	2 cut(s)	395, 778
TauI	GCSGC	4 cut(s)	135, 138, 197, 615
TfiI	GAWTC	5 cut(s)	24, 92, 254, 307, 691
Tru1I	TTAA	1 cut(s)	822
Tru9I	TTAA	1 cut(s)	822
TseFI	GTSAC	2 cut(s)	215, 237
TseI	GCWGC	2 cut(s)	223, 439
Tsp45I	GTSAC	2 cut(s)	215, 237
TspDTI	ATGAA	2 cut(s)	704, 858
TspGWI	ACGGA	1 cut(s)	726
TspMI	CCCGGG	1 cut(s)	402
XagI	CCTNNNNNAGG	1 cut(s)	114
XmaI	CCCGGG	1 cut(s)	402
Zsp2I	ATGCAT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.