Rh5DG266700

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007722
Physical Location & Seq
Reverse (-)
32279124 .. 32282776
3653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG266700.1

Sequence Viewer

Length: 1161 bp
ATGAGAGGAGGAAGCGCCATAGGAATCGGCAGAAAGATCGCGAACCCATCAAGCTCAATTTCCACTCCCGTTTTACACTTCCTCCAACAGCGGCGGCTGCTCCTTCTCTCTTCAACTACCTCGCCGACCAGTTCCCGCCTCAACCAGACTCCGAATTCGACTCGCCCCCACCTCTCCCGGGAGCCGGCCACGGCCGCGGCAAACCCTTATCCCAACCTCCGCCTTCCTTCGCCTCAGGGATCAAACCCAGTTCGGCCGCCGGTCGGGGCCATCCGGACGGGAAGATGCGGAGGAGAATCTACCGGCGGGTTTGATGACGGAGTTGGGCGGAACGGGTTGGGGGAGGCCCATAGTGTGGAGGAGAATGGGCAGTTTGGGGTTCCGGTGGAGCCCCAGAGGGAGCCCAGGAAGCAGAAATTGACCCGGGAAGAGGCGGTGAAGCAGGCAATGGGGATATTGCAGCAGGGAGGCGGTGAGGGAGCGGAGGTTGATGGTGGTGGTGGTGGAAGAGGGAGAGGAGGAGAGAGAGGGATGAGAGGGAGAGGAGGAAGAAGAGGAAGAGGGAGAGGGAGAGGAGGGAGGGGAAGAAGAGAAGGAGAAGGAGATAGGAGAAGGCAAGGGGATGGGGATGGGGATGGCGGCATTGCGCCGGGGCTCTATCTTGGGGACAATGCCGATGGGGAGAAGCTGGCTAAGAGGCTTGGCCCGGAAGTTATGAATCAGTTGACTGAAGCATTTGAGGATATGAGTAATCAAGTGCTTCCGTCGCCTTTGGGTGATGCTTATGTCGATGCATTGGATACCAATTGTATGATTGAGTTTGAGCCGGAGTATCTTATGGGGGAGTTTAATCAAAACCCAGATATTGATGAAAAACCGCAGACTAAGAGAACGAAGGTGGATATTGCTGCTGGATGGCATTCTACTGCACTAACAGATGATGGAGAGGTGATGATTACTCTCACTCTGCTAAATATTAGCTATGAGGTTTTTCATTTGCATGAGTGTAATCTATTGGATGCTGTTATTAGTCTAAAGGTGGTGTATGGATGGGGCCGAGGGGAACATGGTAGACTTGGTTTCGGCGAGAATGATAAGAGCAGTAAAATGGTCCAGCAAAAGGTTCATCTTTTAGCTGGGGAGGATATCGTTCAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

386

Amino Acids

41.3

Weight (kDa)

6.48

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 355
AccBSI CCGCTC 1 cut(s) 482
AccI GTMKAC 1 cut(s) 1072
AccII CGCG 2 cut(s) 41, 197
AccIII TCCGGA 1 cut(s) 273
AclWI GGATC 1 cut(s) 247
AcoI YGGCCR 3 cut(s) 186, 192, 254
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 750
AfiI CCNNNNNNNGG 6 cut(s) 178, 184, 263, 355, 430, 1120
AgsI TTSAA 1 cut(s) 114
AjnI CCWGG 1 cut(s) 404
AluBI AGCT 4 cut(s) 54, 688, 981, 1136
AluI AGCT 4 cut(s) 54, 688, 981, 1136
AlwI GGATC 1 cut(s) 247
Ama87I CYCGRG 2 cut(s) 177, 423
Aor13HI TCCGGA 1 cut(s) 273
AoxI GGCC 7 cut(s) 186, 192, 254, 267, 345, 703, 1054
ApeKI GCWGC 3 cut(s) 97, 460, 908
ApoI RAATTY 1 cut(s) 154
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
AspLEI GCGC 2 cut(s) 17, 649
AspS9I GGNCC 5 cut(s) 267, 346, 704, 1054, 1111
AsuC2I CCSGG 6 cut(s) 178, 179, 424, 425, 651, 707
AsuHPI GGTGA 4 cut(s) 448, 485, 788, 961
AvaI CYCGRG 2 cut(s) 177, 423
AvaII GGWCC 1 cut(s) 1111
AxyI CCTNAGG 1 cut(s) 234
BanII GRGCYC 3 cut(s) 393, 405, 657
BbvI GCAGC 3 cut(s) 84, 472, 895
BceAI ACGGC 1 cut(s) 207
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 1 cut(s) 406
BciVI GTATCC 1 cut(s) 793
BcnI CCSGG 6 cut(s) 178, 179, 424, 425, 651, 707
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 1 cut(s) 793
BisI GCNGC 9 cut(s) 92, 95, 98, 195, 198, 257, 461, 640, 909
BlsI GCNGC 9 cut(s) 93, 96, 99, 196, 199, 258, 462, 641, 910
Bme1390I CCNGG 7 cut(s) 178, 179, 406, 424, 425, 651, 707
Bme18I GGWCC 1 cut(s) 1111
BmeT110I CYCGRG 2 cut(s) 177, 423
BmgT120I GGNCC 5 cut(s) 267, 346, 704, 1054, 1111
BmiI GGNNCC 6 cut(s) 183, 268, 381, 390, 402, 1055
BmrFI CCNGG 7 cut(s) 178, 179, 406, 424, 425, 651, 707
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 4 cut(s) 275, 769, 781, 1009
BmuI ACTGGG 1 cut(s) 242
BpuMI CCSGG 6 cut(s) 178, 179, 424, 425, 651, 707
BsaJI CCNNGG 7 cut(s) 177, 189, 195, 404, 423, 650, 1057
BsaWI WCCGGW 2 cut(s) 273, 382
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 471, 501
Bsc4I CCNNNNNNNGG 6 cut(s) 178, 184, 263, 355, 430, 1120
Bse118I RCCGGY 3 cut(s) 184, 259, 302
Bse1I ACTGG 2 cut(s) 129, 248
Bse21I CCTNAGG 1 cut(s) 234
Bse3DI GCAATG 2 cut(s) 453, 642
BseAI TCCGGA 1 cut(s) 273
BseBI CCWGG 1 cut(s) 406
BseDI CCNNGG 7 cut(s) 177, 189, 195, 404, 423, 650, 1057
BseGI GGATG 8 cut(s) 270, 537, 628, 634, 640, 920, 1024, 1055
BseLI CCNNNNNNNGG 6 cut(s) 178, 184, 263, 355, 430, 1120
BseMI GCAATG 2 cut(s) 453, 642
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 2 cut(s) 129, 248
BseRI GAGGAG 7 cut(s) 21, 306, 374, 531, 534, 558, 588
BseX3I CGGCCG 2 cut(s) 192, 254
BseXI GCAGC 3 cut(s) 84, 472, 895
BseYI CCCAGC 1 cut(s) 1136
BsgI GTGCAG 1 cut(s) 912
Bsh1236I CGCG 2 cut(s) 41, 197
Bsh1285I CGRYCG 3 cut(s) 195, 257, 264
BshFI GGCC 7 cut(s) 188, 194, 256, 269, 347, 705, 1056
BsiEI CGRYCG 3 cut(s) 195, 257, 264
BsiHKCI CYCGRG 2 cut(s) 177, 423
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 6 cut(s) 178, 184, 263, 355, 430, 1120
BsmFI GGGAC 1 cut(s) 680
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 7 cut(s) 188, 194, 256, 269, 347, 705, 1056
BsoBI CYCGRG 2 cut(s) 177, 423
Bsp1286I GDGCHC 3 cut(s) 393, 405, 657
Bsp13I TCCGGA 1 cut(s) 273
Bsp143I GATC 2 cut(s) 36, 239
Bsp68I TCGCGA 1 cut(s) 41
BspANI GGCC 7 cut(s) 188, 194, 256, 269, 347, 705, 1056
BspCNI CTCAG 1 cut(s) 247
BspEI TCCGGA 1 cut(s) 273
BspFNI CGCG 2 cut(s) 41, 197
BspLI GGNNCC 6 cut(s) 183, 268, 381, 390, 402, 1055
BspPI GGATC 1 cut(s) 247
BsrBI CCGCTC 1 cut(s) 482
BsrDI GCAATG 2 cut(s) 453, 642
BsrFI RCCGGY 3 cut(s) 184, 259, 302
BsrI ACTGG 2 cut(s) 129, 248
BssAI RCCGGY 3 cut(s) 184, 259, 302
BssECI CCNNGG 7 cut(s) 177, 189, 195, 404, 423, 650, 1057
BssMI GATC 2 cut(s) 36, 239
Bst2UI CCWGG 1 cut(s) 406
Bst6I CTCTTC 6 cut(s) 115, 423, 502, 547, 553, 583
BstC8I GCNNGC 3 cut(s) 186, 444, 690
BstDEI CTNAG 3 cut(s) 234, 693, 885
BstDSI CCRYGG 2 cut(s) 189, 195
BstF5I GGATG 8 cut(s) 270, 537, 628, 634, 640, 920, 1024, 1055
BstFNI CGCG 2 cut(s) 41, 197
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 649
BstKTI GATC 2 cut(s) 39, 242
BstMBI GATC 2 cut(s) 36, 239
BstMCI CGRYCG 3 cut(s) 195, 257, 264
BstMWI GCNNNNNNNGC 4 cut(s) 97, 194, 409, 766
BstNI CCWGG 1 cut(s) 406
BstSCI CCNGG 7 cut(s) 176, 177, 404, 422, 423, 649, 705
BstUI CGCG 2 cut(s) 41, 197
BstV1I GCAGC 3 cut(s) 84, 472, 895
BstZI CGGCCG 2 cut(s) 192, 254
Bsu36I CCTNAGG 1 cut(s) 234
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 7 cut(s) 188, 194, 256, 269, 347, 705, 1056
BtgI CCRYGG 2 cut(s) 189, 195
BtsCI GGATG 8 cut(s) 270, 537, 628, 634, 640, 920, 1024, 1055
BtuMI TCGCGA 1 cut(s) 41
Cac8I GCNNGC 3 cut(s) 186, 444, 690
CfoI GCGC 2 cut(s) 17, 649
Cfr10I RCCGGY 3 cut(s) 184, 259, 302
Cfr13I GGNCC 5 cut(s) 267, 346, 704, 1054, 1111
Cfr42I CCGCGG 1 cut(s) 198
Cfr9I CCCGGG 2 cut(s) 177, 423
CviAII CATG 2 cut(s) 1001, 1067
DdeI CTNAG 3 cut(s) 234, 693, 885
DpnI GATC 2 cut(s) 38, 241
DpnII GATC 2 cut(s) 36, 239
EaeI YGGCCR 3 cut(s) 186, 192, 254
EagI CGGCCG 2 cut(s) 192, 254
Eam1104I CTCTTC 6 cut(s) 115, 423, 502, 547, 553, 583
EarI CTCTTC 6 cut(s) 115, 423, 502, 547, 553, 583
EciI GGCGGA 2 cut(s) 209, 343
EclXI CGGCCG 2 cut(s) 192, 254
Eco24I GRGCYC 3 cut(s) 393, 405, 657
Eco32I GATATC 1 cut(s) 1147
Eco47I GGWCC 1 cut(s) 1111
Eco52I CGGCCG 2 cut(s) 192, 254
Eco57I CTGAAG 1 cut(s) 750
Eco81I CCTNAGG 1 cut(s) 234
Eco88I CYCGRG 2 cut(s) 177, 423
EcoRI GAATTC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 404
EcoRV GATATC 1 cut(s) 1147
EcoT22I ATGCAT 1 cut(s) 796
EcoT38I GRGCYC 3 cut(s) 393, 405, 657
FaeI CATG 2 cut(s) 1004, 1070
FaqI GGGAC 1 cut(s) 680
FatI CATG 2 cut(s) 1000, 1066
FauI CCCGC 2 cut(s) 143, 299
FblI GTMKAC 1 cut(s) 1072
Fnu4HI GCNGC 9 cut(s) 92, 95, 98, 195, 198, 257, 461, 640, 909
FokI GGATG 8 cut(s) 257, 544, 635, 641, 647, 927, 1031, 1062
FriOI GRGCYC 3 cut(s) 393, 405, 657
Fsp4HI GCNGC 9 cut(s) 92, 95, 98, 195, 198, 257, 461, 640, 909
GlaI GCGC 2 cut(s) 16, 648
GluI GCNGC 9 cut(s) 92, 95, 98, 195, 198, 257, 461, 640, 909
GsaI CCCAGC 1 cut(s) 1140
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 7 cut(s) 188, 194, 256, 269, 347, 705, 1056
HhaI GCGC 2 cut(s) 17, 649
Hin1II CATG 2 cut(s) 1004, 1070
Hin6I GCGC 2 cut(s) 15, 647
HinP1I GCGC 2 cut(s) 15, 647
HincII GTYRAC 1 cut(s) 726
HindII GTYRAC 1 cut(s) 726
HinfI GANTC 5 cut(s) 24, 148, 160, 296, 718
HphI GGTGA 4 cut(s) 448, 485, 788, 961
Hpy166II GTNNAC 2 cut(s) 726, 1073
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 2 cut(s) 40, 274
Hpy8I GTNNAC 2 cut(s) 726, 1073
Hpy99I CGWCG 1 cut(s) 769
HpyAV CCTTC 7 cut(s) 113, 233, 237, 587, 593, 606, 889
HpyCH4V TGCA 4 cut(s) 460, 794, 929, 1000
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 194, 409, 766
HpyF3I CTNAG 3 cut(s) 234, 693, 885
Hsp92II CATG 2 cut(s) 1004, 1070
HspAI GCGC 2 cut(s) 15, 647
Kpn2I TCCGGA 1 cut(s) 273
KroI GCCGGC 1 cut(s) 184
KroNI GCCGGC 1 cut(s) 186
KspI CCGCGG 1 cut(s) 198
Kzo9I GATC 2 cut(s) 36, 239
LmnI GCTCC 5 cut(s) 105, 181, 388, 400, 479
Lsp1109I GCAGC 3 cut(s) 84, 472, 895
LweI GCATC 4 cut(s) 275, 769, 781, 1009
MalI GATC 2 cut(s) 38, 241
MbiI CCGCTC 1 cut(s) 482
MboI GATC 2 cut(s) 36, 239
MboII GAAGA 9 cut(s) 102, 294, 440, 519, 561, 564, 570, 597, 600
MfeI CAATTG 1 cut(s) 805
MhlI GDGCHC 3 cut(s) 393, 405, 657
MluCI AATT 4 cut(s) 57, 154, 416, 805
MlyI GAGTC 2 cut(s) 142, 154
MmeI TCCRAC 1 cut(s) 109
Mph1103I ATGCAT 1 cut(s) 796
MroI TCCGGA 1 cut(s) 273
MroNI GCCGGC 1 cut(s) 184
MseI TTAA 2 cut(s) 849, 1159
MslI CAYNNNNRTG 1 cut(s) 999
MspA1I CMGCKG 2 cut(s) 91, 197
MspR9I CCNGG 7 cut(s) 178, 179, 406, 424, 425, 651, 707
MunI CAATTG 1 cut(s) 805
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 1 cut(s) 406
MvnI CGCG 2 cut(s) 41, 197
MwoI GCNNNNNNNGC 4 cut(s) 97, 194, 409, 766
NaeI GCCGGC 1 cut(s) 186
NciI CCSGG 6 cut(s) 178, 179, 424, 425, 651, 707
NdeII GATC 2 cut(s) 36, 239
NgoMIV GCCGGC 1 cut(s) 184
NlaIII CATG 2 cut(s) 1004, 1070
NlaIV GGNNCC 6 cut(s) 183, 268, 381, 390, 402, 1055
NmeAIII GCCGAG 1 cut(s) 1082
NruI TCGCGA 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 796
PctI GAATGC 1 cut(s) 919
PdiI GCCGGC 1 cut(s) 186
PfeI GAWTC 3 cut(s) 24, 296, 718
PflMI CCANNNNNTGG 1 cut(s) 355
PkrI GCNGC 9 cut(s) 93, 96, 99, 196, 199, 258, 462, 641, 910
PleI GAGTC 2 cut(s) 142, 154
PpsI GAGTC 2 cut(s) 142, 154
Psp6I CCWGG 1 cut(s) 404
PspFI CCCAGC 1 cut(s) 1136
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 6 cut(s) 183, 268, 381, 390, 402, 1055
PspPI GGNCC 5 cut(s) 267, 346, 704, 1054, 1111
RruI TCGCGA 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 999
SacII CCGCGG 1 cut(s) 198
SaqAI TTAA 2 cut(s) 849, 1159
SatI GCNGC 9 cut(s) 92, 95, 98, 195, 198, 257, 461, 640, 909
Sau3AI GATC 2 cut(s) 36, 239
Sau96I GGNCC 5 cut(s) 267, 346, 704, 1054, 1111
SchI GAGTC 2 cut(s) 142, 154
ScrFI CCNGG 7 cut(s) 178, 179, 406, 424, 425, 651, 707
SduI GDGCHC 3 cut(s) 393, 405, 657
SfaNI GCATC 4 cut(s) 275, 769, 781, 1009
Sfr303I CCGCGG 1 cut(s) 198
SgrBI CCGCGG 1 cut(s) 198
SinI GGWCC 1 cut(s) 1111
SmaI CCCGGG 2 cut(s) 179, 425
SmiMI CAYNNNNRTG 1 cut(s) 999
Sse9I AATT 4 cut(s) 57, 154, 416, 805
SspI AATATT 1 cut(s) 976
StyD4I CCNGG 7 cut(s) 176, 177, 404, 422, 423, 649, 705
TaqI TCGA 2 cut(s) 158, 789
TasI AATT 4 cut(s) 57, 154, 416, 805
TauI GCSGC 6 cut(s) 94, 97, 197, 200, 259, 642
TfiI GAWTC 3 cut(s) 24, 296, 718
Tru1I TTAA 2 cut(s) 849, 1159
Tru9I TTAA 2 cut(s) 849, 1159
TseI GCWGC 3 cut(s) 97, 460, 908
TspDTI ATGAA 4 cut(s) 731, 885, 983, 1115
TspGWI ACGGA 2 cut(s) 333, 753
TspMI CCCGGG 2 cut(s) 177, 423
Van91I CCANNNNNTGG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 1111
XapI RAATTY 1 cut(s) 154
XmaI CCCGGG 2 cut(s) 177, 423
XmiI GTMKAC 1 cut(s) 1072
Zsp2I ATGCAT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.