Prupe.4G127000_v2.0.a1

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
6977131 .. 6981069
3939 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G127000.1

Sequence Viewer

Length: 1377 bp
ATGCGAGGCGGAACCGCCATTGGAATAGGAAGGAAGCTCACGAACCCACCATCAAGCCTCTCCATTTCCAAACAAACCCTAATCCCCTTCTCCACTTCCTCCAACAGTGGCGGTGGCCGAGGTAGGGGTCGCGGCGGTCCATTTCCCTCGACTCCTGCCCGATTCGACTTCACTCCCCCACCTCGCGTCCCTGGTCAACCAGACTCCGACGACCCCAAACCTGACCCACCCCCGTCCGCGCCCGGACTCGGCCATGGCCGCGGCAAACCCTTACCTACCTTCTCTTCCTTCGTCTCTGCCATCAAACCCAATTCAGGAACTGGTCGTGGCCAGCCGAGTCAAGTGCAATCCATCCCCGAATCACGTGATCCGGTGGCTCCTGATGCCGGACCCAGCAAACCCATTAAACCCATTTTCTTCGTAAGGGGAGATGGGTCCGACCCGGCGTTGCCCGGTAGCGGGCGGGGAAAACCCATGAATTTTACCCGCCCGGAGGTTCAAGTTAAGGAGGAGAACCGGCATATTCAGGCCCGACCCGAACCGGATCCGAACCAGCCTAGAACCAGGCCCAGAGGTCCGAAGTTGACCCGGGAAGAGGCGGTGAAGCAAGCGCTGGGGATATTGGCACAGGATGGTGCTGAAGGAGATGATGTTGGTGGTGGTGGTGGCAGTGGCAGAGGCAGAGGCAGAGGGATGAGAGGCAGAGGAAGAGGCCGAGGCAGAGGAAGAGGAGATTTTAGAATGAGTGAGAGAGGGGATAGGAGAAGGGGTAAGGATTCGGATGGTAGCTATGCTTCAGGGCTCTATCTTGGGGACAATGCTGATGGGGAGAAGCTGGCTAAGAAGCTTGGCCCTGAGATTATGAATAAATTGGTCGAAAGGTTTGAGGAGATGAGTAGTGAAGTGCTGCCTTCGCCTTTGGATGACGCGTATGTGGATGCCATGCATACCAATTTTATGATAGAGTGTGAACCAGAGTATCTGATGGGAGAGTTTAATAAAAACCCGGATATTGATGAGAAGCCACCTATTTCTCTCAGGGATGCTCTTGAGAAGATGAAGCCTTTCTTGATGGCGTATGAGAATATTGAAAGTCAAGAGGAGTGGGAGGAAGTCGTGAACGAGACTATGGAAAGAGTTCCATTGTTGAAAGAAATTGTTGATCATTACAGTGGGCCAGATAGGGTAACTGCAAAGAAACAACAAGAAGAGTTAGAAAGAGTTGCAAAAACTCTTCCTGCAAAGGTACCTGATTCTGTAAAGCGGTTCACTGATCGTGCAGTGCTTTCTCTCCAGAGCAACCCTGGCTGGGGATTTGACAGGAAATGCCAGTTCATGGATAAGCTTGTGGCGAAGGTTTCCCAACACTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

459

Amino Acids

49.94

Weight (kDa)

9.08

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1246
AccB1I GGYRCC 1 cut(s) 1246
AccB7I CCANNNNNTGG 1 cut(s) 1336
AccII CGCG 5 cut(s) 132, 186, 239, 261, 929
AclWI GGATC 3 cut(s) 362, 539, 552
AcoI YGGCCR 4 cut(s) 115, 250, 256, 328
AcsI RAATTY 1 cut(s) 478
AcuI CTGAAG 2 cut(s) 660, 780
AcvI CACGTG 1 cut(s) 365
AfaI GTAC 1 cut(s) 1248
AfeI AGCGCT 1 cut(s) 612
AflIII ACRYGT 1 cut(s) 927
AgsI TTSAA 3 cut(s) 500, 1091, 1150
AjnI CCWGG 3 cut(s) 190, 563, 1303
AluBI AGCT 5 cut(s) 37, 789, 835, 847, 1345
AluI AGCT 5 cut(s) 37, 789, 835, 847, 1345
Alw26I GTCTC 2 cut(s) 298, 1118
AlwI GGATC 3 cut(s) 362, 539, 552
AlwNI CAGNNNCTG 1 cut(s) 320
Ama87I CYCGRG 1 cut(s) 588
Aor51HI AGCGCT 1 cut(s) 612
AoxI GGCC 9 cut(s) 115, 250, 256, 328, 528, 566, 712, 850, 1175
ApeKI GCWGC 1 cut(s) 907
ApoI RAATTY 1 cut(s) 478
Asp700I GAANNNNTTC 2 cut(s) 1064, 1137
Asp718I GGTACC 1 cut(s) 1246
AspLEI GCGC 2 cut(s) 241, 613
AspS9I GGNCC 8 cut(s) 137, 389, 435, 529, 567, 575, 851, 1175
AsuC2I CCSGG 7 cut(s) 243, 443, 453, 491, 589, 590, 1007
AsuHPI GGTGA 1 cut(s) 613
AvaI CYCGRG 1 cut(s) 588
AvaII GGWCC 4 cut(s) 137, 389, 435, 575
BaeI ACNNNNGTAYC 2 cut(s) 962, 995
BalI TGGCCA 1 cut(s) 330
BamHI GGATCC 1 cut(s) 544
BanI GGYRCC 1 cut(s) 1246
BanII GRGCYC 1 cut(s) 804
BarI GAAGNNNNNNTAC 2 cut(s) 778, 810
BbrPI CACGTG 1 cut(s) 365
BbvI GCAGC 1 cut(s) 894
BccI CCATC 9 cut(s) 58, 308, 359, 425, 626, 776, 818, 979, 1066
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 3 cut(s) 192, 565, 1305
BclI TGATCA 1 cut(s) 1162
BcnI CCSGG 7 cut(s) 243, 443, 453, 491, 589, 590, 1007
BcoDI GTCTC 2 cut(s) 298, 1118
BfaI CTAG 1 cut(s) 558
BfoI RGCGCY 1 cut(s) 614
BisI GCNGC 4 cut(s) 133, 259, 262, 908
BlsI GCNGC 4 cut(s) 134, 260, 263, 909
Bme18I GGWCC 4 cut(s) 137, 389, 435, 575
BmeT110I CYCGRG 1 cut(s) 588
BmgT120I GGNCC 8 cut(s) 137, 389, 435, 529, 567, 575, 851, 1175
BmiI GGNNCC 6 cut(s) 13, 378, 391, 436, 546, 1248
BmsI GCATC 3 cut(s) 373, 928, 1033
BpmI CTGGAG 1 cut(s) 1277
BpuEI CTTGAG 1 cut(s) 1070
BpuMI CCSGG 7 cut(s) 243, 443, 453, 491, 589, 590, 1007
BsaAI YACGTR 1 cut(s) 365
BsaJI CCNNGG 7 cut(s) 118, 190, 253, 259, 588, 715, 1303
BsaWI WCCGGW 2 cut(s) 370, 541
BsaXI ACNNNNNCTCC 4 cut(s) 636, 666, 754, 784
Bse118I RCCGGY 1 cut(s) 516
Bse1I ACTGG 2 cut(s) 325, 1330
BseBI CCWGG 3 cut(s) 192, 565, 1305
BseDI CCNNGG 7 cut(s) 118, 190, 253, 259, 588, 715, 1303
BseGI GGATG 7 cut(s) 351, 637, 699, 787, 928, 943, 1048
BseMII CTCAG 2 cut(s) 846, 1051
BseNI ACTGG 2 cut(s) 325, 1330
BseRI GAGGAG 4 cut(s) 524, 744, 902, 1115
BseXI GCAGC 1 cut(s) 894
BseYI CCCAGC 3 cut(s) 392, 613, 1308
BsgI GTGCAG 1 cut(s) 1299
Bsh1236I CGCG 5 cut(s) 132, 186, 239, 261, 929
BshFI GGCC 9 cut(s) 117, 252, 258, 330, 530, 568, 714, 852, 1177
BshNI GGYRCC 1 cut(s) 1246
BsiHKCI CYCGRG 1 cut(s) 588
BslFI GGGAC 2 cut(s) 173, 827
BsmAI GTCTC 2 cut(s) 298, 1118
BsmBI CGTCTC 1 cut(s) 298
BsmFI GGGAC 2 cut(s) 173, 827
BsnI GGCC 9 cut(s) 117, 252, 258, 330, 530, 568, 714, 852, 1177
BsoBI CYCGRG 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 804
Bsp143I GATC 4 cut(s) 367, 544, 1162, 1273
Bsp19I CCATGG 1 cut(s) 253
BspANI GGCC 9 cut(s) 117, 252, 258, 330, 530, 568, 714, 852, 1177
BspCNI CTCAG 2 cut(s) 847, 1050
BspFNI CGCG 5 cut(s) 132, 186, 239, 261, 929
BspLI GGNNCC 6 cut(s) 13, 378, 391, 436, 546, 1248
BspPI GGATC 3 cut(s) 362, 539, 552
BspT107I GGYRCC 1 cut(s) 1246
BsrFI RCCGGY 1 cut(s) 516
BsrI ACTGG 2 cut(s) 325, 1330
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 7 cut(s) 118, 190, 253, 259, 588, 715, 1303
BssMI GATC 4 cut(s) 367, 544, 1162, 1273
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 3 cut(s) 192, 565, 1305
Bst4CI ACNGT 2 cut(s) 107, 1172
Bst6I CTCTTC 6 cut(s) 289, 588, 703, 721, 1203, 1239
BstBAI YACGTR 1 cut(s) 365
BstC8I GCNNGC 4 cut(s) 332, 461, 609, 837
BstDEI CTNAG 3 cut(s) 840, 855, 1037
BstDSI CCRYGG 2 cut(s) 253, 259
BstF5I GGATG 7 cut(s) 351, 637, 699, 787, 928, 943, 1048
BstFNI CGCG 5 cut(s) 132, 186, 239, 261, 929
BstH2I RGCGCY 1 cut(s) 614
BstHHI GCGC 2 cut(s) 241, 613
BstKTI GATC 4 cut(s) 370, 547, 1165, 1276
BstMAI GTCTC 2 cut(s) 298, 1118
BstMBI GATC 4 cut(s) 367, 544, 1162, 1273
BstMWI GCNNNNNNNGC 4 cut(s) 258, 383, 913, 1305
BstNI CCWGG 3 cut(s) 192, 565, 1305
BstUI CGCG 5 cut(s) 132, 186, 239, 261, 929
BstV1I GCAGC 1 cut(s) 894
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BsuRI GGCC 9 cut(s) 117, 252, 258, 330, 530, 568, 714, 852, 1177
BtgI CCRYGG 2 cut(s) 253, 259
BtsCI GGATG 7 cut(s) 351, 637, 699, 787, 928, 943, 1048
BtsI GCAGTG 2 cut(s) 676, 1287
BtsIMutI CAGTG 5 cut(s) 112, 676, 1177, 1269, 1287
Cac8I GCNNGC 4 cut(s) 332, 461, 609, 837
CaiI CAGNNNCTG 1 cut(s) 320
CfoI GCGC 2 cut(s) 241, 613
Cfr10I RCCGGY 1 cut(s) 516
Cfr13I GGNCC 8 cut(s) 137, 389, 435, 529, 567, 575, 851, 1175
Cfr42I CCGCGG 1 cut(s) 262
Cfr9I CCCGGG 1 cut(s) 588
CseI GACGC 2 cut(s) 175, 935
Csp6I GTAC 1 cut(s) 1247
CspCI CAANNNNNGTGG 2 cut(s) 1085, 1120
CviAII CATG 4 cut(s) 254, 475, 943, 1336
CviQI GTAC 1 cut(s) 1247
DdeI CTNAG 3 cut(s) 840, 855, 1037
DpnI GATC 4 cut(s) 369, 546, 1164, 1275
DpnII GATC 4 cut(s) 367, 544, 1162, 1273
EaeI YGGCCR 4 cut(s) 115, 250, 256, 328
Eam1104I CTCTTC 6 cut(s) 289, 588, 703, 721, 1203, 1239
EarI CTCTTC 6 cut(s) 289, 588, 703, 721, 1203, 1239
EciI GGCGGA 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 804
Eco47I GGWCC 4 cut(s) 137, 389, 435, 575
Eco47III AGCGCT 1 cut(s) 612
Eco57I CTGAAG 2 cut(s) 660, 780
Eco72I CACGTG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 588
EcoRII CCWGG 3 cut(s) 190, 563, 1303
EcoT14I CCWWGG 1 cut(s) 253
EcoT22I ATGCAT 1 cut(s) 948
EcoT38I GRGCYC 1 cut(s) 804
ErhI CCWWGG 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 4 cut(s) 257, 478, 946, 1339
FalI AAGNNNNNCTT 2 cut(s) 1052, 1084
FaqI GGGAC 2 cut(s) 173, 827
FatI CATG 4 cut(s) 253, 474, 942, 1335
FauI CCCGC 3 cut(s) 452, 456, 494
FbaI TGATCA 1 cut(s) 1162
Fnu4HI GCNGC 4 cut(s) 133, 259, 262, 908
FokI GGATG 7 cut(s) 338, 644, 706, 794, 935, 950, 1055
FriOI GRGCYC 1 cut(s) 804
Fsp4HI GCNGC 4 cut(s) 133, 259, 262, 908
FspBI CTAG 1 cut(s) 558
GlaI GCGC 2 cut(s) 240, 612
GluI GCNGC 4 cut(s) 133, 259, 262, 908
GsaI CCCAGC 3 cut(s) 396, 617, 1312
GsuI CTGGAG 1 cut(s) 1277
HaeII RGCGCY 1 cut(s) 614
HaeIII GGCC 9 cut(s) 117, 252, 258, 330, 530, 568, 714, 852, 1177
HgaI GACGC 2 cut(s) 175, 935
HhaI GCGC 2 cut(s) 241, 613
Hin1II CATG 4 cut(s) 257, 478, 946, 1339
Hin6I GCGC 2 cut(s) 239, 611
HinP1I GCGC 2 cut(s) 239, 611
HincII GTYRAC 2 cut(s) 197, 585
HindII GTYRAC 2 cut(s) 197, 585
HindIII AAGCTT 2 cut(s) 845, 1343
HinfI GANTC 8 cut(s) 151, 162, 203, 246, 337, 359, 776, 1253
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 5 cut(s) 197, 585, 971, 1120, 1269
Hpy188I TCNGA 6 cut(s) 208, 439, 549, 579, 781, 984
Hpy188III TCNNGA 8 cut(s) 40, 315, 380, 1049, 1069, 1097, 1117, 1294
Hpy8I GTNNAC 5 cut(s) 197, 585, 971, 1120, 1269
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 8 cut(s) 24, 97, 289, 298, 635, 759, 921, 1348
HpyCH4III ACNGT 2 cut(s) 107, 1172
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 6 cut(s) 346, 946, 1193, 1226, 1241, 1280
HpyF10VI GCNNNNNNNGC 4 cut(s) 258, 383, 913, 1305
HpyF3I CTNAG 3 cut(s) 840, 855, 1037
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 4 cut(s) 257, 478, 946, 1339
HspAI GCGC 2 cut(s) 239, 611
KpnI GGTACC 1 cut(s) 1250
Ksp22I TGATCA 1 cut(s) 1162
KspI CCGCGG 1 cut(s) 262
Kzo9I GATC 4 cut(s) 367, 544, 1162, 1273
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 1 cut(s) 894
LweI GCATC 3 cut(s) 373, 928, 1033
MaeI CTAG 1 cut(s) 558
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 1 cut(s) 1186
MalI GATC 4 cut(s) 369, 546, 1164, 1275
MboI GATC 4 cut(s) 367, 544, 1162, 1273
MboII GAAGA 8 cut(s) 276, 409, 605, 720, 738, 1066, 1220, 1226
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 1 cut(s) 804
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 5 cut(s) 310, 478, 869, 952, 1155
MluI ACGCGT 1 cut(s) 927
MluNI TGGCCA 1 cut(s) 330
MlyI GAGTC 4 cut(s) 145, 197, 240, 346
MmeI TCCRAC 3 cut(s) 126, 231, 462
Mox20I TGGCCA 1 cut(s) 330
Mph1103I ATGCAT 1 cut(s) 948
MroXI GAANNNNTTC 2 cut(s) 1064, 1137
MscI TGGCCA 1 cut(s) 330
MseI TTAA 3 cut(s) 405, 504, 996
MslI CAYNNNNRTG 1 cut(s) 1170
Msp20I TGGCCA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 261
MvaI CCWGG 3 cut(s) 192, 565, 1305
MvnI CGCG 5 cut(s) 132, 186, 239, 261, 929
MwoI GCNNNNNNNGC 4 cut(s) 258, 383, 913, 1305
NciI CCSGG 7 cut(s) 243, 443, 453, 491, 589, 590, 1007
NcoI CCATGG 1 cut(s) 253
NdeII GATC 4 cut(s) 367, 544, 1162, 1273
NlaIII CATG 4 cut(s) 257, 478, 946, 1339
NlaIV GGNNCC 6 cut(s) 13, 378, 391, 436, 546, 1248
NmeAIII GCCGAG 4 cut(s) 143, 228, 360, 740
NsiI ATGCAT 1 cut(s) 948
PdmI GAANNNNTTC 2 cut(s) 1064, 1137
PfeI GAWTC 4 cut(s) 162, 359, 776, 1253
PflMI CCANNNNNTGG 1 cut(s) 1336
PkrI GCNGC 4 cut(s) 134, 260, 263, 909
PleI GAGTC 4 cut(s) 145, 197, 240, 345
PmaCI CACGTG 1 cut(s) 365
PmlI CACGTG 1 cut(s) 365
PpsI GAGTC 4 cut(s) 145, 197, 240, 345
Ppu21I YACGTR 1 cut(s) 365
Psp6I CCWGG 3 cut(s) 190, 563, 1303
PspCI CACGTG 1 cut(s) 365
PspFI CCCAGC 3 cut(s) 392, 613, 1308
PspGI CCWGG 3 cut(s) 190, 563, 1303
PspN4I GGNNCC 6 cut(s) 13, 378, 391, 436, 546, 1248
PspPI GGNCC 8 cut(s) 137, 389, 435, 529, 567, 575, 851, 1175
PstNI CAGNNNCTG 1 cut(s) 320
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 1 cut(s) 1248
RsaNI GTAC 1 cut(s) 1247
RseI CAYNNNNRTG 1 cut(s) 1170
SacII CCGCGG 1 cut(s) 262
SaqAI TTAA 3 cut(s) 405, 504, 996
SatI GCNGC 4 cut(s) 133, 259, 262, 908
Sau3AI GATC 4 cut(s) 367, 544, 1162, 1273
Sau96I GGNCC 8 cut(s) 137, 389, 435, 529, 567, 575, 851, 1175
SchI GAGTC 4 cut(s) 145, 197, 240, 346
SduI GDGCHC 1 cut(s) 804
SfaNI GCATC 3 cut(s) 373, 928, 1033
Sfr303I CCGCGG 1 cut(s) 262
SgrBI CCGCGG 1 cut(s) 262
SinI GGWCC 4 cut(s) 137, 389, 435, 575
SmaI CCCGGG 1 cut(s) 590
SmiMI CAYNNNNRTG 1 cut(s) 1170
SmlI CTYRAG 1 cut(s) 1049
SmoI CTYRAG 1 cut(s) 1049
Sse9I AATT 5 cut(s) 310, 478, 869, 952, 1155
SspI AATATT 1 cut(s) 1087
SspMI CTAG 1 cut(s) 558
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 107, 1172
TaiI ACGT 1 cut(s) 367
TaqI TCGA 3 cut(s) 149, 165, 876
TasI AATT 5 cut(s) 310, 478, 869, 952, 1155
TauI GCSGC 3 cut(s) 135, 261, 264
TfiI GAWTC 4 cut(s) 162, 359, 776, 1253
Tru1I TTAA 3 cut(s) 405, 504, 996
Tru9I TTAA 3 cut(s) 405, 504, 996
TscAI CASTG 5 cut(s) 112, 676, 1177, 1276, 1287
TseI GCWGC 1 cut(s) 907
TspDTI ATGAA 4 cut(s) 491, 878, 1073, 1324
TspMI CCCGGG 1 cut(s) 588
TspRI CASTG 5 cut(s) 112, 676, 1177, 1276, 1287
Van91I CCANNNNNTGG 1 cut(s) 1336
VpaK11BI GGWCC 4 cut(s) 137, 389, 435, 575
XapI RAATTY 1 cut(s) 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 1301
XmaI CCCGGG 1 cut(s) 588
XmnI GAANNNNTTC 2 cut(s) 1064, 1137
XspI CTAG 1 cut(s) 558
Zsp2I ATGCAT 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.