Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007722

Physical Location & Seq

Genomic Coordinates Forward (+)

17700536 .. 17705495

Gene Structure 4960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG164300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGAGAGGAGGAATCGGCAGAAAGATCGCGAACCCATCAAGCTTCTCCATTTCCAGACAAACCCTACTCCCGTTTTCCACTTCCTCCAACAGCGGCGGCGGCGGCGGCCGTGGTCGCGGCCGCGGCGGCCCAACTCCCACCGCTCCTTCTCTCTTCAACTACCTCGCCGACCAGTTCCCGCCTCAACCCGACTCCGAATCCGACCCGCCCCCACCTATCCCGGGAGCCGGCCACGGCCGCGGCAAACCCTTATCCCAATCTCCGCCTTCCTTCGCCTCGGGGATCAAACCCAGTTCGGCCGCCGGTCGGGGCCATCCGGGTCACGTGCAGCCCCCGTCAGAGTCACGTGAGGGAGATGATTCGGGTTTACCCAAGAAGCCCGTTTTCTTCAGACGGGAAGATGCGGAGGAGAATCTACCGGCGGGTTTGATGACGGCGTTGGGCGGAACCGGGCGGGGGAGGCCCATTTCGGGCCCGGCGGCCCAAAGTGTGGAGGAGAATCGGCAGATTGGGGCTCCGGTGGAGCCCCAGAGGGAGCCCAGGAAGCCGAAATTGACCCGGGAAGAGGCGGTGAAGCAGGCAATGGGGATATTGCAGCAGGGAGGCGGTGAGGGAGCGGAGGTTGATGGTGGTGGTGGTGGAAGAGGGAGAGGAGGAGAGAGAGGGATGAGAGGGAGAGGAGGAGGAAGAGGAAGAGGGAGAGGGAGAGGAGGGAGGGGAAGGAGAGAAGGAGAAGGAGATAGGAGAAGGCAAGGGGATGGGGATGGCGGCATTGCGCCGGGGCTCTATCTTGGGGACAATGCAGATGGGGAGAAGCTGGCTAAGAGGCTTGGCCCGGAAGTTATGAATCAGATGACTGAAGCATTTGAGGATATGAGTAATCAAGTGCTTCCGTCGCCTTTGGATGATGCTTATGTCGATGCATTGGATACCAATTGTATGATTGAGTTTGAGCCGGAGTATCTTATGGGGGAGTTTAATCAAAACCCAGATATTGATGAAAAACCGCCTATTCCTCTCAGGGATGCACTTGAGAAGATGAAGCCTTTCTTGATGGCATATGAGGGAATTCAAAGTCAAGAGGAGTGGGAGGAAGCCATGCAGGAGACAATGGAAAGAGTTCCATTGTTGAAGGAAATTGTCGATCAGTACAGCGGACCAGATAGGGTTACTGCAAAGAAACAACAAGAAGAGTTAGAAAGAGTTGCAAAAACTCTTCCTGCAAAAGTACCTGATTCTGTAAAGCAGTTCACTGATCGCGTGGTGCTTTCTCTCCAGGTTAAAGTTTTGTCCTTTTGCATTCTAAAACCTCGTCATGAAAAACAGGAAACCAATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

446

Amino Acids

47.95

Weight (kDa)

6.04

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53645
fragaria_vesca	FvH4_3g14000 FvH4_3g14000
malus_domestica	MD05G1239100.v1.1 MD10G1217100.v1.1
prunus_persica	Prupe.4G127000_v2.0.a1
pyrus_communis	pycom05g21540 pycom10g18320
rosa_chinensis	RchiOBHm_Chr5g0023231 RchiOBHm_Chr5g0023281
rosa_laevigata	RLG00000032711
rosa_multiflora	Rmu_sc0002343.1_g000043 Rmu_sc0009954.1_g000001 Rmu_sc0009954.1_g000004 Rmu_sc0011343.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056100
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164300 Rh5BG163800 Rh5CG179000 Rh5DG165600 Rh5DG266700
rosa_wichuraiana	Rw5G014840 Rw7G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	490
AccBSI	CCGCTC	2 cut(s)	143, 617
AccII	CGCG	5 cut(s)	29, 117, 123, 240, 1260
AclWI	GGATC	1 cut(s)	290
AcoI	YGGCCR	5 cut(s)	106, 118, 229, 235, 297
AcsI	RAATTY	1 cut(s)	1068
AcuI	CTGAAG	2 cut(s)	373, 879
AcvI	CACGTG	2 cut(s)	325, 347
AfaI	GTAC	2 cut(s)	1151, 1230
AfiI	CCNNNNNNNGG	7 cut(s)	221, 227, 306, 456, 470, 490, 565
AgsI	TTSAA	3 cut(s)	157, 1073, 1132
AjnI	CCWGG	2 cut(s)	539, 1275
AluBI	AGCT	2 cut(s)	42, 817
AluI	AGCT	2 cut(s)	42, 817
Alw26I	GTCTC	1 cut(s)	1100
AlwI	GGATC	1 cut(s)	290
Ama87I	CYCGRG	3 cut(s)	220, 277, 558
ApaI	GGGCCC	1 cut(s)	476
ApeKI	GCWGC	2 cut(s)	328, 595
ApoI	RAATTY	1 cut(s)	1068
Asp700I	GAANNNNTTC	2 cut(s)	1046, 1119
AspLEI	GCGC	1 cut(s)	778
AspS9I	GGNCC	8 cut(s)	128, 310, 462, 472, 473, 481, 833, 1157
AsuC2I	CCSGG	9 cut(s)	221, 222, 318, 451, 476, 559, 560, 780, 836
AsuHPI	GGTGA	2 cut(s)	583, 620
AvaI	CYCGRG	3 cut(s)	220, 277, 558
AvaII	GGWCC	1 cut(s)	1157
BaeGI	GKGCMC	1 cut(s)	476
BanII	GRGCYC	5 cut(s)	476, 517, 528, 540, 786
BbrPI	CACGTG	2 cut(s)	325, 347
BbvI	GCAGC	2 cut(s)	340, 607
BccI	CCATC	7 cut(s)	43, 321, 620, 752, 758, 800, 1048
BceAI	ACGGC	3 cut(s)	93, 250, 450
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	2 cut(s)	541, 1277
BciVI	GTATCC	1 cut(s)	922
BcnI	CCSGG	9 cut(s)	221, 222, 318, 451, 476, 559, 560, 780, 836
BcoDI	GTCTC	1 cut(s)	1100
BfuI	GTATCC	1 cut(s)	922
BglI	GCCNNNNNGGC	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	1157
BmeT110I	CYCGRG	3 cut(s)	220, 277, 558
BmgT120I	GGNCC	8 cut(s)	128, 310, 462, 472, 473, 481, 833, 1157
BmiI	GGNNCC	7 cut(s)	226, 311, 448, 474, 516, 525, 537
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	4 cut(s)	391, 898, 910, 1015
BmuI	ACTGGG	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	1259
BpuEI	CTTGAG	1 cut(s)	1052
BpuMI	CCSGG	9 cut(s)	221, 222, 318, 451, 476, 559, 560, 780, 836
BsaAI	YACGTR	2 cut(s)	325, 347
BsaJI	CCNNGG	9 cut(s)	109, 121, 220, 232, 238, 276, 539, 558, 779
BsaWI	WCCGGW	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	7 cut(s)	221, 227, 306, 456, 470, 490, 565
Bse118I	RCCGGY	3 cut(s)	227, 302, 418
Bse1I	ACTGG	2 cut(s)	172, 291
Bse3DI	GCAATG	2 cut(s)	588, 771
BseBI	CCWGG	2 cut(s)	541, 1277
BseDI	CCNNGG	9 cut(s)	109, 121, 220, 232, 238, 276, 539, 558, 779
BseGI	GGATG	6 cut(s)	313, 672, 763, 769, 910, 1030
BseLI	CCNNNNNNNGG	7 cut(s)	221, 227, 306, 456, 470, 490, 565
BseMI	GCAATG	2 cut(s)	588, 771
BseMII	CTCAG	1 cut(s)	1033
BseNI	ACTGG	2 cut(s)	172, 291
BseRI	GAGGAG	9 cut(s)	21, 422, 509, 666, 669, 693, 696, 723, 1097
BseSI	GKGCMC	1 cut(s)	476
BseX3I	CGGCCG	4 cut(s)	106, 118, 235, 297
BseXI	GCAGC	2 cut(s)	340, 607
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	5 cut(s)	29, 117, 123, 240, 1260
Bsh1285I	CGRYCG	5 cut(s)	109, 121, 238, 300, 307
BsiEI	CGRYCG	5 cut(s)	109, 121, 238, 300, 307
BsiHKCI	CYCGRG	3 cut(s)	220, 277, 558
BslFI	GGGAC	1 cut(s)	809
BslI	CCNNNNNNNGG	7 cut(s)	221, 227, 306, 456, 470, 490, 565
BsmAI	GTCTC	1 cut(s)	1100
BsmFI	GGGAC	1 cut(s)	809
BsmI	GAATGC	1 cut(s)	1299
BsoBI	CYCGRG	3 cut(s)	220, 277, 558
Bsp120I	GGGCCC	1 cut(s)	472
Bsp1286I	GDGCHC	5 cut(s)	476, 517, 528, 540, 786
Bsp143I	GATC	4 cut(s)	24, 282, 1144, 1255
Bsp68I	TCGCGA	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	1032
BspFNI	CGCG	5 cut(s)	29, 117, 123, 240, 1260
BspHI	TCATGA	1 cut(s)	1315
BspLI	GGNNCC	7 cut(s)	226, 311, 448, 474, 516, 525, 537
BspPI	GGATC	1 cut(s)	290
BsrBI	CCGCTC	2 cut(s)	143, 617
BsrDI	GCAATG	2 cut(s)	588, 771
BsrFI	RCCGGY	3 cut(s)	227, 302, 418
BsrI	ACTGG	2 cut(s)	172, 291
BssAI	RCCGGY	3 cut(s)	227, 302, 418
BssECI	CCNNGG	9 cut(s)	109, 121, 220, 232, 238, 276, 539, 558, 779
BssMI	GATC	4 cut(s)	24, 282, 1144, 1255
Bst2UI	CCWGG	2 cut(s)	541, 1277
Bst6I	CTCTTC	7 cut(s)	158, 558, 637, 682, 688, 1185, 1221
BstBAI	YACGTR	2 cut(s)	325, 347
BstC8I	GCNNGC	3 cut(s)	229, 579, 819
BstDEI	CTNAG	2 cut(s)	822, 1019
BstDSI	CCRYGG	4 cut(s)	109, 121, 232, 238
BstF5I	GGATG	6 cut(s)	313, 672, 763, 769, 910, 1030
BstFNI	CGCG	5 cut(s)	29, 117, 123, 240, 1260
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	4 cut(s)	27, 285, 1147, 1258
BstMAI	GTCTC	1 cut(s)	1100
BstMBI	GATC	4 cut(s)	24, 282, 1144, 1255
BstMCI	CGRYCG	5 cut(s)	109, 121, 238, 300, 307
BstNI	CCWGG	2 cut(s)	541, 1277
BstSLI	GKGCMC	1 cut(s)	476
BstUI	CGCG	5 cut(s)	29, 117, 123, 240, 1260
BstV1I	GCAGC	2 cut(s)	340, 607
BstZI	CGGCCG	4 cut(s)	106, 118, 235, 297
BsuI	GTATCC	1 cut(s)	922
BtgI	CCRYGG	4 cut(s)	109, 121, 232, 238
BtsCI	GGATG	6 cut(s)	313, 672, 763, 769, 910, 1030
BtsIMutI	CAGTG	1 cut(s)	1251
BtuMI	TCGCGA	1 cut(s)	29
Cac8I	GCNNGC	3 cut(s)	229, 579, 819
CciI	TCATGA	1 cut(s)	1315
CciNI	GCGGCCGC	1 cut(s)	118
CfoI	GCGC	1 cut(s)	778
Cfr10I	RCCGGY	3 cut(s)	227, 302, 418
Cfr13I	GGNCC	8 cut(s)	128, 310, 462, 472, 473, 481, 833, 1157
Cfr42I	CCGCGG	2 cut(s)	124, 241
Cfr9I	CCCGGG	2 cut(s)	220, 558
Csp6I	GTAC	2 cut(s)	1150, 1229
CspCI	CAANNNNNGTGG	2 cut(s)	1067, 1102
CviAII	CATG	2 cut(s)	1099, 1316
CviQI	GTAC	2 cut(s)	1150, 1229
DdeI	CTNAG	2 cut(s)	822, 1019
DpnI	GATC	4 cut(s)	26, 284, 1146, 1257
DpnII	GATC	4 cut(s)	24, 282, 1144, 1255
EaeI	YGGCCR	5 cut(s)	106, 118, 229, 235, 297
EagI	CGGCCG	4 cut(s)	106, 118, 235, 297
Eam1104I	CTCTTC	7 cut(s)	158, 558, 637, 682, 688, 1185, 1221
EarI	CTCTTC	7 cut(s)	158, 558, 637, 682, 688, 1185, 1221
EciI	GGCGGA	2 cut(s)	252, 459
EclXI	CGGCCG	4 cut(s)	106, 118, 235, 297
Eco24I	GRGCYC	5 cut(s)	476, 517, 528, 540, 786
Eco47I	GGWCC	1 cut(s)	1157
Eco52I	CGGCCG	4 cut(s)	106, 118, 235, 297
Eco57I	CTGAAG	2 cut(s)	373, 879
Eco72I	CACGTG	2 cut(s)	325, 347
Eco88I	CYCGRG	3 cut(s)	220, 277, 558
EcoRI	GAATTC	1 cut(s)	1068
EcoRII	CCWGG	2 cut(s)	539, 1275
EcoT22I	ATGCAT	1 cut(s)	925
EcoT38I	GRGCYC	5 cut(s)	476, 517, 528, 540, 786
FaeI	CATG	2 cut(s)	1102, 1319
FaiI	YATR	9 cut(s)	845, 875, 915, 941, 968, 1060, 1062, 1100, 1317
FalI	AAGNNNNNCTT	2 cut(s)	1034, 1066
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	2 cut(s)	1098, 1315
FauI	CCCGC	4 cut(s)	186, 213, 415, 447
FauNDI	CATATG	1 cut(s)	1060
FokI	GGATG	6 cut(s)	300, 679, 770, 776, 917, 1037
FriOI	GRGCYC	5 cut(s)	476, 517, 528, 540, 786
GlaI	GCGC	1 cut(s)	777
GsuI	CTGGAG	1 cut(s)	1259
HhaI	GCGC	1 cut(s)	778
Hin1II	CATG	2 cut(s)	1102, 1319
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	9 cut(s)	12, 191, 197, 341, 359, 412, 499, 847, 1235
HphI	GGTGA	2 cut(s)	583, 620
Hpy166II	GTNNAC	2 cut(s)	368, 1251
Hpy188I	TCNGA	5 cut(s)	196, 202, 340, 392, 852
Hpy188III	TCNNGA	5 cut(s)	28, 54, 1051, 1079, 1316
Hpy8I	GTNNAC	2 cut(s)	368, 1251
Hpy99I	CGWCG	1 cut(s)	898
HpyAV	CCTTC	8 cut(s)	156, 276, 280, 714, 722, 728, 741, 1126
HpyCH4IV	ACGT	2 cut(s)	324, 346
HpyF3I	CTNAG	2 cut(s)	822, 1019
HpySE526I	ACGT	2 cut(s)	324, 346
Hsp92II	CATG	2 cut(s)	1102, 1319
HspAI	GCGC	1 cut(s)	776
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
KspI	CCGCGG	2 cut(s)	124, 241
Kzo9I	GATC	4 cut(s)	24, 282, 1144, 1255
LmnI	GCTCC	6 cut(s)	148, 224, 520, 523, 535, 614
Lsp1109I	GCAGC	2 cut(s)	340, 607
LweI	GCATC	4 cut(s)	391, 898, 910, 1015
MaeII	ACGT	2 cut(s)	324, 346
MaeIII	GTNAC	3 cut(s)	320, 342, 1168
MalI	GATC	4 cut(s)	26, 284, 1146, 1257
MbiI	CCGCTC	2 cut(s)	143, 617
MboI	GATC	4 cut(s)	24, 282, 1144, 1255
MfeI	CAATTG	1 cut(s)	934
MhlI	GDGCHC	5 cut(s)	476, 517, 528, 540, 786
MluCI	AATT	5 cut(s)	551, 934, 1068, 1137, 1333
MlyI	GAGTC	2 cut(s)	185, 350
MmeI	TCCRAC	2 cut(s)	111, 225
Mph1103I	ATGCAT	1 cut(s)	925
MroNI	GCCGGC	1 cut(s)	227
MroXI	GAANNNNTTC	2 cut(s)	1046, 1119
MseI	TTAA	2 cut(s)	978, 1281
MspA1I	CMGCKG	4 cut(s)	93, 123, 240, 1155
MunI	CAATTG	1 cut(s)	934
Mva1269I	GAATGC	1 cut(s)	1299
MvaI	CCWGG	2 cut(s)	541, 1277
MvnI	CGCG	5 cut(s)	29, 117, 123, 240, 1260
NaeI	GCCGGC	1 cut(s)	229
NciI	CCSGG	9 cut(s)	221, 222, 318, 451, 476, 559, 560, 780, 836
NdeI	CATATG	1 cut(s)	1060
NdeII	GATC	4 cut(s)	24, 282, 1144, 1255
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	2 cut(s)	1102, 1319
NlaIV	GGNNCC	7 cut(s)	226, 311, 448, 474, 516, 525, 537
NmuCI	GTSAC	2 cut(s)	320, 342
NotI	GCGGCCGC	1 cut(s)	118
NruI	TCGCGA	1 cut(s)	29
NsiI	ATGCAT	1 cut(s)	925
PagI	TCATGA	1 cut(s)	1315
PctI	GAATGC	1 cut(s)	1299
PdiI	GCCGGC	1 cut(s)	229
PdmI	GAANNNNTTC	2 cut(s)	1046, 1119
PfeI	GAWTC	7 cut(s)	12, 197, 359, 412, 499, 847, 1235
PflMI	CCANNNNNTGG	1 cut(s)	490
PleI	GAGTC	2 cut(s)	185, 349
PmaCI	CACGTG	2 cut(s)	325, 347
PmlI	CACGTG	2 cut(s)	325, 347
PpsI	GAGTC	2 cut(s)	185, 349
Ppu21I	YACGTR	2 cut(s)	325, 347
Psp6I	CCWGG	2 cut(s)	539, 1275
PspCI	CACGTG	2 cut(s)	325, 347
PspGI	CCWGG	2 cut(s)	539, 1275
PspN4I	GGNNCC	7 cut(s)	226, 311, 448, 474, 516, 525, 537
PspOMI	GGGCCC	1 cut(s)	472
PspPI	GGNCC	8 cut(s)	128, 310, 462, 472, 473, 481, 833, 1157
RruI	TCGCGA	1 cut(s)	29
RsaI	GTAC	2 cut(s)	1151, 1230
RsaNI	GTAC	2 cut(s)	1150, 1229
SacII	CCGCGG	2 cut(s)	124, 241
SaqAI	TTAA	2 cut(s)	978, 1281
Sau3AI	GATC	4 cut(s)	24, 282, 1144, 1255
Sau96I	GGNCC	8 cut(s)	128, 310, 462, 472, 473, 481, 833, 1157
SchI	GAGTC	2 cut(s)	185, 350
SduI	GDGCHC	5 cut(s)	476, 517, 528, 540, 786
SfaNI	GCATC	4 cut(s)	391, 898, 910, 1015
SfiI	GGCCNNNNNGGCC	1 cut(s)	126
Sfr303I	CCGCGG	2 cut(s)	124, 241
SgrBI	CCGCGG	2 cut(s)	124, 241
SinI	GGWCC	1 cut(s)	1157
SmaI	CCCGGG	2 cut(s)	222, 560
SmlI	CTYRAG	1 cut(s)	1031
SmoI	CTYRAG	1 cut(s)	1031
Sse9I	AATT	5 cut(s)	551, 934, 1068, 1137, 1333
TaiI	ACGT	2 cut(s)	327, 349
TaqI	TCGA	2 cut(s)	918, 1143
TasI	AATT	5 cut(s)	551, 934, 1068, 1137, 1333
TatI	WGTACW	1 cut(s)	1149
TfiI	GAWTC	7 cut(s)	12, 197, 359, 412, 499, 847, 1235
Tru1I	TTAA	2 cut(s)	978, 1281
Tru9I	TTAA	2 cut(s)	978, 1281
TscAI	CASTG	1 cut(s)	1258
TseFI	GTSAC	2 cut(s)	320, 342
TseI	GCWGC	2 cut(s)	328, 595
Tsp45I	GTSAC	2 cut(s)	320, 342
TspDTI	ATGAA	4 cut(s)	860, 1014, 1055, 1332
TspGWI	ACGGA	1 cut(s)	882
TspMI	CCCGGG	2 cut(s)	220, 558
TspRI	CASTG	1 cut(s)	1258
Van91I	CCANNNNNTGG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	1157
XapI	RAATTY	1 cut(s)	1068
XmaI	CCCGGG	2 cut(s)	220, 558
XmnI	GAANNNNTTC	2 cut(s)	1046, 1119
Zsp2I	ATGCAT	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.