Rw5G014840

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007722
Physical Location & Seq
Forward (+)
17802899 .. 17807319
4421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G014840.1

Sequence Viewer

Length: 1338 bp
ATGAGAGGAGGAATCGGCAGAAAGATCGCGAACCCATCAAGCTTCTCCATTTCCAGACAAACCCTACTCCCGTTTTCCACTTCCTCCAACAGCGGCGGCGGCGGCGGCCCAACTCCCACCGCTCCTTCTCTCTTCAACTACCTCGCCGACCAGTTCCCGCCTCAACCCGACTCCGAATCCGACCCGCCCCCACCTATCCCGGGAGCCGGCCACGGCCGCGGCAAACCCTTATCCCAATCTCCGCCTTCCTTCGCCTCGGGGATCAAACCCAGTTCGGCCGCCGGTCGGGGCCATCCGGGTCACGTGCAGCCCCCGTCAGAGTCACGTGAGGGAGATGATTCGGGTTTACCCAAGAAGCCCGTTTTCTTCAGACGGGAAGATGCGGAGGAGAATCTACCGGCGGGTTTGATGACGGCGTTGGGCGGAACCGGGCGGGGGAGGCCCATTTCGGGCCCGGCGGCCCAAAGTGTGGAGGAGAATCGGCAGATTGGGGCTCCGGTGGAGCCCCAGAGGGAGCCCAGGAAGCCGAAATTGACCCGGGAAGAGGCGGTGAAGCAGGCAATGGGGATATTGCAGCAGGGAGGCGGTGAGGGAGCGGAGGTTGATGGTGGTGGTGGTGGAAGAGGGAGAGGAGGAGAGAGAGGGATGAGAGGGAGAGGAGGAGGAAGAGGAAGAGGGAGAGGGAGAGGAGGGAGGGGAAGGAGAGAAGGAGAAGGAGATAGGAGAAGGCAAGGGGATGGGGATGGCGGCATTGCGCCGGGGCTCTATCTTGGGGACAATGCAGATGGGGAGAAGCTGGCTAAGAGGCTTGGCCCGGAAGTTATGAATCAGATGACTGAAGCATTTGAGGATATGAGTAATCAAGTGCTTCCGTCGCCTTTGGATGATGCTTATGTCGATGCATTGGATACCAATTGTATGATTGAGTTTGAGCCGGAGTATCTTATGGGGGAGTTTAATCAAAACCCAGATATTGATGAAAAACCGCCTATTCCTCTCAGGGATGCACTTGAGAAGATGAAGCCTTTCTTGATGGCATATGAGGGAATTCAAAGTCAAGAGGAGTGGGAGGAAGCCATGCAGGAGACAATGGAAAGAGTTCCATTGTTGAAGGAAATTGTCGATCAGTACAGCGGACCAGATAGGGTTACTGCAAAGAAACAACAAGAAGAGTTAGAAAGAGTTGCAAAAACTCTTCCTGCAAAAGTACCTGATTCTGTAAAGCAGTTCACTGATCGCGTGGTGCTTTCTCTCCAGGGCAACCCTGGCTGGGGATTTCACAGGAAATGCCAGTTCATGGATAAGCTAACGGAAAAGGTTTCCAAGCACTACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

445

Amino Acids

47.94

Weight (kDa)

5.95

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 469, 1297
AccBSI CCGCTC 2 cut(s) 122, 596
AccII CGCG 3 cut(s) 29, 219, 1239
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 3 cut(s) 208, 214, 276
AcsI RAATTY 1 cut(s) 1047
AcuI CTGAAG 2 cut(s) 352, 858
AcvI CACGTG 2 cut(s) 304, 326
AfaI GTAC 2 cut(s) 1130, 1209
AgsI TTSAA 3 cut(s) 136, 1052, 1111
AjnI CCWGG 3 cut(s) 518, 1254, 1264
AluBI AGCT 3 cut(s) 42, 796, 1306
AluI AGCT 3 cut(s) 42, 796, 1306
Alw26I GTCTC 1 cut(s) 1079
AlwI GGATC 1 cut(s) 269
Ama87I CYCGRG 3 cut(s) 199, 256, 537
AoxI GGCC 9 cut(s) 106, 208, 214, 276, 289, 440, 451, 459, 811
ApaI GGGCCC 1 cut(s) 455
ApeKI GCWGC 2 cut(s) 307, 574
ApoI RAATTY 1 cut(s) 1047
Asp700I GAANNNNTTC 2 cut(s) 1025, 1098
AspLEI GCGC 1 cut(s) 757
AspS9I GGNCC 8 cut(s) 107, 289, 441, 451, 452, 460, 812, 1136
AsuC2I CCSGG 9 cut(s) 200, 201, 297, 430, 455, 538, 539, 759, 815
AsuHPI GGTGA 2 cut(s) 562, 599
AvaI CYCGRG 3 cut(s) 199, 256, 537
AvaII GGWCC 1 cut(s) 1136
BaeGI GKGCMC 1 cut(s) 455
BanII GRGCYC 5 cut(s) 455, 496, 507, 519, 765
BbrPI CACGTG 2 cut(s) 304, 326
BbvI GCAGC 2 cut(s) 319, 586
BccI CCATC 7 cut(s) 43, 300, 599, 731, 737, 779, 1027
BceAI ACGGC 2 cut(s) 229, 429
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BciT130I CCWGG 3 cut(s) 520, 1256, 1266
BciVI GTATCC 1 cut(s) 901
BcnI CCSGG 9 cut(s) 200, 201, 297, 430, 455, 538, 539, 759, 815
BcoDI GTCTC 1 cut(s) 1079
BfuI GTATCC 1 cut(s) 901
Bme18I GGWCC 1 cut(s) 1136
BmeT110I CYCGRG 3 cut(s) 199, 256, 537
BmgT120I GGNCC 8 cut(s) 107, 289, 441, 451, 452, 460, 812, 1136
BmiI GGNNCC 7 cut(s) 205, 290, 427, 453, 495, 504, 516
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 4 cut(s) 370, 877, 889, 994
BmuI ACTGGG 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 1238
BpuEI CTTGAG 1 cut(s) 1031
BpuMI CCSGG 9 cut(s) 200, 201, 297, 430, 455, 538, 539, 759, 815
BsaAI YACGTR 2 cut(s) 304, 326
BsaJI CCNNGG 9 cut(s) 199, 211, 217, 255, 518, 537, 758, 1255, 1264
BsaWI WCCGGW 1 cut(s) 496
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bse118I RCCGGY 3 cut(s) 206, 281, 397
Bse1I ACTGG 3 cut(s) 151, 270, 1291
Bse3DI GCAATG 2 cut(s) 567, 750
BseBI CCWGG 3 cut(s) 520, 1256, 1266
BseDI CCNNGG 9 cut(s) 199, 211, 217, 255, 518, 537, 758, 1255, 1264
BseGI GGATG 6 cut(s) 292, 651, 742, 748, 889, 1009
BseMI GCAATG 2 cut(s) 567, 750
BseMII CTCAG 1 cut(s) 1012
BseNI ACTGG 3 cut(s) 151, 270, 1291
BseRI GAGGAG 9 cut(s) 21, 401, 488, 645, 648, 672, 675, 702, 1076
BseSI GKGCMC 1 cut(s) 455
BseX3I CGGCCG 2 cut(s) 214, 276
BseXI GCAGC 2 cut(s) 319, 586
BseYI CCCAGC 1 cut(s) 1269
BsgI GTGCAG 1 cut(s) 326
Bsh1236I CGCG 3 cut(s) 29, 219, 1239
Bsh1285I CGRYCG 3 cut(s) 217, 279, 286
BshFI GGCC 9 cut(s) 108, 210, 216, 278, 291, 442, 453, 461, 813
BsiEI CGRYCG 3 cut(s) 217, 279, 286
BsiHKCI CYCGRG 3 cut(s) 199, 256, 537
BslFI GGGAC 1 cut(s) 788
BsmAI GTCTC 1 cut(s) 1079
BsmFI GGGAC 1 cut(s) 788
BsnI GGCC 9 cut(s) 108, 210, 216, 278, 291, 442, 453, 461, 813
BsoBI CYCGRG 3 cut(s) 199, 256, 537
Bsp120I GGGCCC 1 cut(s) 451
Bsp1286I GDGCHC 5 cut(s) 455, 496, 507, 519, 765
Bsp143I GATC 4 cut(s) 24, 261, 1123, 1234
Bsp68I TCGCGA 1 cut(s) 29
BspANI GGCC 9 cut(s) 108, 210, 216, 278, 291, 442, 453, 461, 813
BspCNI CTCAG 1 cut(s) 1011
BspFNI CGCG 3 cut(s) 29, 219, 1239
BspLI GGNNCC 7 cut(s) 205, 290, 427, 453, 495, 504, 516
BspPI GGATC 1 cut(s) 269
BsrBI CCGCTC 2 cut(s) 122, 596
BsrDI GCAATG 2 cut(s) 567, 750
BsrFI RCCGGY 3 cut(s) 206, 281, 397
BsrI ACTGG 3 cut(s) 151, 270, 1291
BssAI RCCGGY 3 cut(s) 206, 281, 397
BssECI CCNNGG 9 cut(s) 199, 211, 217, 255, 518, 537, 758, 1255, 1264
BssMI GATC 4 cut(s) 24, 261, 1123, 1234
Bst2UI CCWGG 3 cut(s) 520, 1256, 1266
Bst6I CTCTTC 7 cut(s) 137, 537, 616, 661, 667, 1164, 1200
BstBAI YACGTR 2 cut(s) 304, 326
BstC8I GCNNGC 3 cut(s) 208, 558, 798
BstDEI CTNAG 2 cut(s) 801, 998
BstDSI CCRYGG 2 cut(s) 211, 217
BstF5I GGATG 6 cut(s) 292, 651, 742, 748, 889, 1009
BstFNI CGCG 3 cut(s) 29, 219, 1239
BstHHI GCGC 1 cut(s) 757
BstKTI GATC 4 cut(s) 27, 264, 1126, 1237
BstMAI GTCTC 1 cut(s) 1079
BstMBI GATC 4 cut(s) 24, 261, 1123, 1234
BstMCI CGRYCG 3 cut(s) 217, 279, 286
BstMWI GCNNNNNNNGC 8 cut(s) 99, 102, 105, 216, 439, 523, 874, 1266
BstNI CCWGG 3 cut(s) 520, 1256, 1266
BstSLI GKGCMC 1 cut(s) 455
BstUI CGCG 3 cut(s) 29, 219, 1239
BstV1I GCAGC 2 cut(s) 319, 586
BstZI CGGCCG 2 cut(s) 214, 276
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 9 cut(s) 108, 210, 216, 278, 291, 442, 453, 461, 813
BtgI CCRYGG 2 cut(s) 211, 217
BtsCI GGATG 6 cut(s) 292, 651, 742, 748, 889, 1009
BtsIMutI CAGTG 1 cut(s) 1230
BtuMI TCGCGA 1 cut(s) 29
Cac8I GCNNGC 3 cut(s) 208, 558, 798
CfoI GCGC 1 cut(s) 757
Cfr10I RCCGGY 3 cut(s) 206, 281, 397
Cfr13I GGNCC 8 cut(s) 107, 289, 441, 451, 452, 460, 812, 1136
Cfr42I CCGCGG 1 cut(s) 220
Cfr9I CCCGGG 2 cut(s) 199, 537
Csp6I GTAC 2 cut(s) 1129, 1208
CspCI CAANNNNNGTGG 2 cut(s) 1046, 1081
CviAII CATG 2 cut(s) 1078, 1297
CviQI GTAC 2 cut(s) 1129, 1208
DdeI CTNAG 2 cut(s) 801, 998
DpnI GATC 4 cut(s) 26, 263, 1125, 1236
DpnII GATC 4 cut(s) 24, 261, 1123, 1234
EaeI YGGCCR 3 cut(s) 208, 214, 276
EagI CGGCCG 2 cut(s) 214, 276
Eam1104I CTCTTC 7 cut(s) 137, 537, 616, 661, 667, 1164, 1200
EarI CTCTTC 7 cut(s) 137, 537, 616, 661, 667, 1164, 1200
EciI GGCGGA 2 cut(s) 231, 438
EclXI CGGCCG 2 cut(s) 214, 276
Eco24I GRGCYC 5 cut(s) 455, 496, 507, 519, 765
Eco47I GGWCC 1 cut(s) 1136
Eco52I CGGCCG 2 cut(s) 214, 276
Eco57I CTGAAG 2 cut(s) 352, 858
Eco72I CACGTG 2 cut(s) 304, 326
Eco88I CYCGRG 3 cut(s) 199, 256, 537
EcoRI GAATTC 1 cut(s) 1047
EcoRII CCWGG 3 cut(s) 518, 1254, 1264
EcoT22I ATGCAT 1 cut(s) 904
EcoT38I GRGCYC 5 cut(s) 455, 496, 507, 519, 765
FaeI CATG 2 cut(s) 1081, 1300
FaiI YATR 9 cut(s) 824, 854, 894, 920, 947, 1039, 1041, 1079, 1298
FalI AAGNNNNNCTT 2 cut(s) 1013, 1045
FaqI GGGAC 1 cut(s) 788
FatI CATG 2 cut(s) 1077, 1296
FauI CCCGC 4 cut(s) 165, 192, 394, 426
FauNDI CATATG 1 cut(s) 1039
FokI GGATG 6 cut(s) 279, 658, 749, 755, 896, 1016
FriOI GRGCYC 5 cut(s) 455, 496, 507, 519, 765
GlaI GCGC 1 cut(s) 756
GsaI CCCAGC 1 cut(s) 1273
GsuI CTGGAG 1 cut(s) 1238
HaeIII GGCC 9 cut(s) 108, 210, 216, 278, 291, 442, 453, 461, 813
HhaI GCGC 1 cut(s) 757
Hin1II CATG 2 cut(s) 1081, 1300
Hin6I GCGC 1 cut(s) 755
HinP1I GCGC 1 cut(s) 755
HindIII AAGCTT 1 cut(s) 40
HinfI GANTC 9 cut(s) 12, 170, 176, 320, 338, 391, 478, 826, 1214
HphI GGTGA 2 cut(s) 562, 599
Hpy166II GTNNAC 2 cut(s) 347, 1230
Hpy188I TCNGA 5 cut(s) 175, 181, 319, 371, 831
Hpy188III TCNNGA 4 cut(s) 28, 54, 1030, 1058
Hpy8I GTNNAC 2 cut(s) 347, 1230
Hpy99I CGWCG 1 cut(s) 877
HpyAV CCTTC 8 cut(s) 135, 255, 259, 693, 701, 707, 720, 1105
HpyCH4IV ACGT 2 cut(s) 303, 325
HpyCH4V TGCA 9 cut(s) 307, 574, 782, 902, 1007, 1081, 1154, 1187, 1202
HpyF10VI GCNNNNNNNGC 8 cut(s) 99, 102, 105, 216, 439, 523, 874, 1266
HpyF3I CTNAG 2 cut(s) 801, 998
HpySE526I ACGT 2 cut(s) 303, 325
Hsp92II CATG 2 cut(s) 1081, 1300
HspAI GCGC 1 cut(s) 755
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
KspI CCGCGG 1 cut(s) 220
Kzo9I GATC 4 cut(s) 24, 261, 1123, 1234
LmnI GCTCC 6 cut(s) 127, 203, 499, 502, 514, 593
Lsp1109I GCAGC 2 cut(s) 319, 586
LweI GCATC 4 cut(s) 370, 877, 889, 994
MaeII ACGT 2 cut(s) 303, 325
MaeIII GTNAC 3 cut(s) 299, 321, 1147
MalI GATC 4 cut(s) 26, 263, 1125, 1236
MbiI CCGCTC 2 cut(s) 122, 596
MboI GATC 4 cut(s) 24, 261, 1123, 1234
MfeI CAATTG 1 cut(s) 913
MhlI GDGCHC 5 cut(s) 455, 496, 507, 519, 765
MluCI AATT 4 cut(s) 530, 913, 1047, 1116
MlyI GAGTC 2 cut(s) 164, 329
MmeI TCCRAC 2 cut(s) 111, 204
Mph1103I ATGCAT 1 cut(s) 904
MroNI GCCGGC 1 cut(s) 206
MroXI GAANNNNTTC 2 cut(s) 1025, 1098
MseI TTAA 1 cut(s) 957
MspA1I CMGCKG 3 cut(s) 93, 219, 1134
MunI CAATTG 1 cut(s) 913
MvaI CCWGG 3 cut(s) 520, 1256, 1266
MvnI CGCG 3 cut(s) 29, 219, 1239
MwoI GCNNNNNNNGC 8 cut(s) 99, 102, 105, 216, 439, 523, 874, 1266
NaeI GCCGGC 1 cut(s) 208
NciI CCSGG 9 cut(s) 200, 201, 297, 430, 455, 538, 539, 759, 815
NdeI CATATG 1 cut(s) 1039
NdeII GATC 4 cut(s) 24, 261, 1123, 1234
NgoMIV GCCGGC 1 cut(s) 206
NlaIII CATG 2 cut(s) 1081, 1300
NlaIV GGNNCC 7 cut(s) 205, 290, 427, 453, 495, 504, 516
NmuCI GTSAC 2 cut(s) 299, 321
NruI TCGCGA 1 cut(s) 29
NsiI ATGCAT 1 cut(s) 904
PdiI GCCGGC 1 cut(s) 208
PdmI GAANNNNTTC 2 cut(s) 1025, 1098
PfeI GAWTC 7 cut(s) 12, 176, 338, 391, 478, 826, 1214
PflMI CCANNNNNTGG 2 cut(s) 469, 1297
PleI GAGTC 2 cut(s) 164, 328
PmaCI CACGTG 2 cut(s) 304, 326
PmlI CACGTG 2 cut(s) 304, 326
PpsI GAGTC 2 cut(s) 164, 328
Ppu21I YACGTR 2 cut(s) 304, 326
Psp6I CCWGG 3 cut(s) 518, 1254, 1264
PspCI CACGTG 2 cut(s) 304, 326
PspFI CCCAGC 1 cut(s) 1269
PspGI CCWGG 3 cut(s) 518, 1254, 1264
PspN4I GGNNCC 7 cut(s) 205, 290, 427, 453, 495, 504, 516
PspOMI GGGCCC 1 cut(s) 451
PspPI GGNCC 8 cut(s) 107, 289, 441, 451, 452, 460, 812, 1136
RruI TCGCGA 1 cut(s) 29
RsaI GTAC 2 cut(s) 1130, 1209
RsaNI GTAC 2 cut(s) 1129, 1208
SacII CCGCGG 1 cut(s) 220
SaqAI TTAA 1 cut(s) 957
Sau3AI GATC 4 cut(s) 24, 261, 1123, 1234
Sau96I GGNCC 8 cut(s) 107, 289, 441, 451, 452, 460, 812, 1136
SchI GAGTC 2 cut(s) 164, 329
SduI GDGCHC 5 cut(s) 455, 496, 507, 519, 765
SfaNI GCATC 4 cut(s) 370, 877, 889, 994
Sfr303I CCGCGG 1 cut(s) 220
SgrBI CCGCGG 1 cut(s) 220
SinI GGWCC 1 cut(s) 1136
SmaI CCCGGG 2 cut(s) 201, 539
SmlI CTYRAG 1 cut(s) 1010
SmoI CTYRAG 1 cut(s) 1010
Sse9I AATT 4 cut(s) 530, 913, 1047, 1116
TaiI ACGT 2 cut(s) 306, 328
TaqI TCGA 2 cut(s) 897, 1122
TasI AATT 4 cut(s) 530, 913, 1047, 1116
TatI WGTACW 1 cut(s) 1128
TfiI GAWTC 7 cut(s) 12, 176, 338, 391, 478, 826, 1214
Tru1I TTAA 1 cut(s) 957
Tru9I TTAA 1 cut(s) 957
TscAI CASTG 1 cut(s) 1237
TseFI GTSAC 2 cut(s) 299, 321
TseI GCWGC 2 cut(s) 307, 574
Tsp45I GTSAC 2 cut(s) 299, 321
TspDTI ATGAA 4 cut(s) 839, 993, 1034, 1285
TspGWI ACGGA 2 cut(s) 861, 1325
TspMI CCCGGG 2 cut(s) 199, 537
TspRI CASTG 1 cut(s) 1237
Van91I CCANNNNNTGG 2 cut(s) 469, 1297
VpaK11BI GGWCC 1 cut(s) 1136
XapI RAATTY 1 cut(s) 1047
XcmI CCANNNNNNNNNTGG 1 cut(s) 1262
XmaI CCCGGG 2 cut(s) 199, 537
XmnI GAANNNNTTC 2 cut(s) 1025, 1098
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.