Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007722

Physical Location & Seq

Genomic Coordinates Forward (+)

18097106 .. 18100944

Gene Structure 3839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032711

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGAGAGGAGGAAGCGCCATAGGAATCGGCAGAAAGCTCGCGAACCCATCAAGCTTCTCCATTTCCAGACAAACCCTACTCCCGTTTTCCACTTCCTCCAACAGCGGCGGCGGCCGAGGTCGAGGCCGCGGCGGCCCAACTCCCACCGCTCCTTCTCTCTTCAACTACCTCGCCGACCAGTTCCCGCCTCAACCCGACTCCGAATCCGACCCGCCCCCACCTCTACCAGGAGCCGGCCACGGCCGCGGCAAACCCTTATCCCAACCTCCGCCTTCCTTCGCCTCGGGGATCAAACCCGGTTCGTCCGCCGGTCGGGGAGGCTCGGGTCACGTGCAGCCCCCGGCAGAGTCACGTGAGGGAGATGATTCGGGTTTACCCAAGAAGCCTGTTTTCTTCAGACGGGAAGATGCGGAGGAGAATCTACCGGCGGGTTTGATGACGGCGTTGGGCGGAACCGGGCGGGGGAGGCCCATTTCGGGCCCGGCGGCCCAAAGTGTGGTGGAGAATCGGCAAATTGGGGATCCGGTGGAGCCCAAGAGGGAGCCCCGGAAGCCGAAATTGACCCGGGAAGAGGCGGTGAAGCAGGCAATGGGGATATTGCAGCAGGGAAGCGGTGAGGGGGCGGAGGTTGATGGTGGTGGTGGAAGAGGGAGAGGAGGGCAGAGAGGGATGAGAGGGAGAGGAGGAGGAGGAGGAAGAGGGAGAGGGAGAGGAGGGAGGGGAAGGAGAGAAGGAGAAGGAGATAGGAGAAGGCAAGGGGATGGGGATGGCGGCATTGCGCCGGGGCTTTATCTTGGGGACAATGCCGATGGGGAGAAGCTGGCTAAGAGGCTTGGCCCCGAAGTTATGAATCAGTTGACTGAAGCATTTGAGGATATGAGTAATCAAGTGCTTCCTTCGCCTTTGGATGATGCTTATGTCGATGCATTGGATACCAATTGTATGATTGAGTTTGAGCCGGAGTATCTTATGGGGGAGTTTAATCAAAACCCAGATATTGATGAAAAACCGCCTATTCCTCTCAGGGATGCACTTGAGAAGATGAAGCCTTTCTTGATGGCATATGAGGGTATTCAAAGTCAAGAGGAGTGGGAGGAAGCCATGCAGGAGACAATGGAAAGAGTTCCATTGTTGAAGGAAATTGTCGATCAGTACAGCGGACCAGATAGGGTAACTGCAAAGAAACAACAAGAAGAGTTAGAAAGAGTTGCAAAAACTCTTCCTGCAAAAGTACCTGATTCTGTAAAGCAGTTCACTGATCGCGTGGTGCTTTCTCTCCAGGGCAACCCTGGCTGGGGATATCACAGGAAATGCCAGTTCATGGATAAGCTAACGGAAAAGGTTTCCAAGCACTACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

454

Amino Acids

48.63

Weight (kDa)

6.96

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53645
fragaria_vesca	FvH4_3g14000 FvH4_3g14000
malus_domestica	MD05G1239100.v1.1 MD10G1217100.v1.1
prunus_persica	Prupe.4G127000_v2.0.a1
pyrus_communis	pycom05g21540 pycom10g18320
rosa_chinensis	RchiOBHm_Chr5g0023231 RchiOBHm_Chr5g0023281
rosa_laevigata	RLG00000032711
rosa_multiflora	Rmu_sc0002343.1_g000043 Rmu_sc0009954.1_g000001 Rmu_sc0009954.1_g000004 Rmu_sc0011343.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056100
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164300 Rh5BG163800 Rh5CG179000 Rh5DG165600 Rh5DG266700
rosa_wichuraiana	Rw5G014840 Rw7G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	496, 1321
AccBSI	CCGCTC	1 cut(s)	149
AccII	CGCG	4 cut(s)	41, 129, 246, 1263
AclWI	GGATC	3 cut(s)	296, 515, 528
AcoI	YGGCCR	3 cut(s)	112, 235, 241
AcuI	CTGAAG	2 cut(s)	379, 882
AcvI	CACGTG	2 cut(s)	331, 353
AfaI	GTAC	2 cut(s)	1154, 1233
AgsI	TTSAA	3 cut(s)	163, 1076, 1135
AjnI	CCWGG	3 cut(s)	226, 1278, 1288
AluBI	AGCT	4 cut(s)	37, 54, 820, 1330
AluI	AGCT	4 cut(s)	37, 54, 820, 1330
Alw26I	GTCTC	1 cut(s)	1103
AlwI	GGATC	3 cut(s)	296, 515, 528
Ama87I	CYCGRG	3 cut(s)	283, 322, 564
AoxI	GGCC	9 cut(s)	112, 124, 133, 235, 241, 467, 478, 486, 835
ApaI	GGGCCC	1 cut(s)	482
ApeKI	GCWGC	2 cut(s)	334, 601
Asp700I	GAANNNNTTC	2 cut(s)	1049, 1122
AspLEI	GCGC	2 cut(s)	17, 781
AspS9I	GGNCC	7 cut(s)	134, 468, 478, 479, 487, 836, 1160
AsuC2I	CCSGG	8 cut(s)	297, 341, 457, 482, 547, 565, 566, 783
AsuHPI	GGTGA	2 cut(s)	589, 626
AvaI	CYCGRG	3 cut(s)	283, 322, 564
AvaII	GGWCC	1 cut(s)	1160
BaeGI	GKGCMC	1 cut(s)	482
BamHI	GGATCC	1 cut(s)	520
BanII	GRGCYC	3 cut(s)	482, 534, 546
BbrPI	CACGTG	2 cut(s)	331, 353
BbvI	GCAGC	2 cut(s)	346, 613
BccI	CCATC	6 cut(s)	55, 626, 755, 761, 803, 1051
BceAI	ACGGC	2 cut(s)	256, 456
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	3 cut(s)	228, 1280, 1290
BciVI	GTATCC	1 cut(s)	925
BcnI	CCSGG	8 cut(s)	297, 341, 457, 482, 547, 565, 566, 783
BcoDI	GTCTC	1 cut(s)	1103
BfoI	RGCGCY	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	925
BglI	GCCNNNNNGGC	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	1160
BmeT110I	CYCGRG	3 cut(s)	283, 322, 564
BmgT120I	GGNCC	7 cut(s)	134, 468, 478, 479, 487, 836, 1160
BmiI	GGNNCC	7 cut(s)	232, 454, 480, 522, 531, 543, 838
BmsI	GCATC	4 cut(s)	397, 901, 913, 1018
BpmI	CTGGAG	1 cut(s)	1262
BpuEI	CTTGAG	1 cut(s)	1055
BpuMI	CCSGG	8 cut(s)	297, 341, 457, 482, 547, 565, 566, 783
BsaAI	YACGTR	2 cut(s)	331, 353
BsaWI	WCCGGW	1 cut(s)	523
Bse118I	RCCGGY	3 cut(s)	233, 308, 424
Bse1I	ACTGG	2 cut(s)	178, 1315
Bse3DI	GCAATG	2 cut(s)	594, 774
BseBI	CCWGG	3 cut(s)	228, 1280, 1290
BseGI	GGATG	5 cut(s)	675, 766, 772, 913, 1033
BseMI	GCAATG	2 cut(s)	594, 774
BseMII	CTCAG	1 cut(s)	1036
BseNI	ACTGG	2 cut(s)	178, 1315
BseRI	GAGGAG	9 cut(s)	21, 428, 669, 696, 699, 702, 705, 726, 1100
BseSI	GKGCMC	1 cut(s)	482
BseX3I	CGGCCG	2 cut(s)	112, 241
BseXI	GCAGC	2 cut(s)	346, 613
BseYI	CCCAGC	1 cut(s)	1293
BsgI	GTGCAG	1 cut(s)	353
Bsh1236I	CGCG	4 cut(s)	41, 129, 246, 1263
Bsh1285I	CGRYCG	3 cut(s)	115, 244, 313
BshFI	GGCC	9 cut(s)	114, 126, 135, 237, 243, 469, 480, 488, 837
BsiEI	CGRYCG	3 cut(s)	115, 244, 313
BsiHKCI	CYCGRG	3 cut(s)	283, 322, 564
BslFI	GGGAC	1 cut(s)	812
BsmAI	GTCTC	1 cut(s)	1103
BsmFI	GGGAC	1 cut(s)	812
BsnI	GGCC	9 cut(s)	114, 126, 135, 237, 243, 469, 480, 488, 837
BsoBI	CYCGRG	3 cut(s)	283, 322, 564
Bsp120I	GGGCCC	1 cut(s)	478
Bsp1286I	GDGCHC	3 cut(s)	482, 534, 546
Bsp143I	GATC	4 cut(s)	288, 520, 1147, 1258
Bsp68I	TCGCGA	1 cut(s)	41
BspANI	GGCC	9 cut(s)	114, 126, 135, 237, 243, 469, 480, 488, 837
BspCNI	CTCAG	1 cut(s)	1035
BspFNI	CGCG	4 cut(s)	41, 129, 246, 1263
BspLI	GGNNCC	7 cut(s)	232, 454, 480, 522, 531, 543, 838
BspPI	GGATC	3 cut(s)	296, 515, 528
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	594, 774
BsrFI	RCCGGY	3 cut(s)	233, 308, 424
BsrI	ACTGG	2 cut(s)	178, 1315
BssAI	RCCGGY	3 cut(s)	233, 308, 424
BssMI	GATC	4 cut(s)	288, 520, 1147, 1258
Bst2UI	CCWGG	3 cut(s)	228, 1280, 1290
Bst6I	CTCTTC	6 cut(s)	164, 564, 640, 691, 1188, 1224
BstBAI	YACGTR	2 cut(s)	331, 353
BstC8I	GCNNGC	4 cut(s)	39, 235, 585, 822
BstDEI	CTNAG	2 cut(s)	825, 1022
BstDSI	CCRYGG	3 cut(s)	127, 238, 244
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	5 cut(s)	675, 766, 772, 913, 1033
BstFNI	CGCG	4 cut(s)	41, 129, 246, 1263
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 781
BstKTI	GATC	4 cut(s)	291, 523, 1150, 1261
BstMAI	GTCTC	1 cut(s)	1103
BstMBI	GATC	4 cut(s)	288, 520, 1147, 1258
BstMCI	CGRYCG	3 cut(s)	115, 244, 313
BstMWI	GCNNNNNNNGC	7 cut(s)	111, 132, 243, 466, 550, 898, 1290
BstNI	CCWGG	3 cut(s)	228, 1280, 1290
BstSLI	GKGCMC	1 cut(s)	482
BstUI	CGCG	4 cut(s)	41, 129, 246, 1263
BstV1I	GCAGC	2 cut(s)	346, 613
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BstZI	CGGCCG	2 cut(s)	112, 241
BsuI	GTATCC	1 cut(s)	925
BsuRI	GGCC	9 cut(s)	114, 126, 135, 237, 243, 469, 480, 488, 837
BtgI	CCRYGG	3 cut(s)	127, 238, 244
BtsCI	GGATG	5 cut(s)	675, 766, 772, 913, 1033
BtsIMutI	CAGTG	1 cut(s)	1254
BtuMI	TCGCGA	1 cut(s)	41
Cac8I	GCNNGC	4 cut(s)	39, 235, 585, 822
CfoI	GCGC	2 cut(s)	17, 781
Cfr10I	RCCGGY	3 cut(s)	233, 308, 424
Cfr13I	GGNCC	7 cut(s)	134, 468, 478, 479, 487, 836, 1160
Cfr42I	CCGCGG	2 cut(s)	130, 247
Cfr9I	CCCGGG	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	1153, 1232
CspCI	CAANNNNNGTGG	2 cut(s)	1070, 1105
CviAII	CATG	2 cut(s)	1102, 1321
CviQI	GTAC	2 cut(s)	1153, 1232
DdeI	CTNAG	2 cut(s)	825, 1022
DpnI	GATC	4 cut(s)	290, 522, 1149, 1260
DpnII	GATC	4 cut(s)	288, 520, 1147, 1258
EaeI	YGGCCR	3 cut(s)	112, 235, 241
EagI	CGGCCG	2 cut(s)	112, 241
Eam1104I	CTCTTC	6 cut(s)	164, 564, 640, 691, 1188, 1224
EarI	CTCTTC	6 cut(s)	164, 564, 640, 691, 1188, 1224
EciI	GGCGGA	4 cut(s)	258, 295, 465, 638
EclXI	CGGCCG	2 cut(s)	112, 241
Eco24I	GRGCYC	3 cut(s)	482, 534, 546
Eco32I	GATATC	1 cut(s)	1301
Eco47I	GGWCC	1 cut(s)	1160
Eco52I	CGGCCG	2 cut(s)	112, 241
Eco57I	CTGAAG	2 cut(s)	379, 882
Eco72I	CACGTG	2 cut(s)	331, 353
Eco88I	CYCGRG	3 cut(s)	283, 322, 564
EcoNI	CCTNNNNNAGG	1 cut(s)	225
EcoRII	CCWGG	3 cut(s)	226, 1278, 1288
EcoRV	GATATC	1 cut(s)	1301
EcoT22I	ATGCAT	1 cut(s)	928
EcoT38I	GRGCYC	3 cut(s)	482, 534, 546
FaeI	CATG	2 cut(s)	1105, 1324
FalI	AAGNNNNNCTT	2 cut(s)	1037, 1069
FaqI	GGGAC	1 cut(s)	812
FatI	CATG	2 cut(s)	1101, 1320
FauI	CCCGC	4 cut(s)	192, 219, 421, 453
FauNDI	CATATG	1 cut(s)	1063
FokI	GGATG	5 cut(s)	682, 773, 779, 920, 1040
FriOI	GRGCYC	3 cut(s)	482, 534, 546
GlaI	GCGC	2 cut(s)	16, 780
GsaI	CCCAGC	1 cut(s)	1297
GsuI	CTGGAG	1 cut(s)	1262
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	9 cut(s)	114, 126, 135, 237, 243, 469, 480, 488, 837
HhaI	GCGC	2 cut(s)	17, 781
Hin1II	CATG	2 cut(s)	1105, 1324
Hin6I	GCGC	2 cut(s)	15, 779
HinP1I	GCGC	2 cut(s)	15, 779
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	9 cut(s)	24, 197, 203, 347, 365, 418, 505, 850, 1238
HphI	GGTGA	2 cut(s)	589, 626
Hpy166II	GTNNAC	3 cut(s)	374, 858, 1254
Hpy188I	TCNGA	3 cut(s)	202, 208, 398
Hpy188III	TCNNGA	4 cut(s)	40, 66, 1054, 1082
Hpy8I	GTNNAC	3 cut(s)	374, 858, 1254
HpyAV	CCTTC	9 cut(s)	162, 282, 286, 717, 725, 731, 744, 906, 1129
HpyCH4IV	ACGT	2 cut(s)	330, 352
HpyCH4V	TGCA	8 cut(s)	334, 601, 926, 1031, 1105, 1178, 1211, 1226
HpyF10VI	GCNNNNNNNGC	7 cut(s)	111, 132, 243, 466, 550, 898, 1290
HpyF3I	CTNAG	2 cut(s)	825, 1022
HpySE526I	ACGT	2 cut(s)	330, 352
Hsp92II	CATG	2 cut(s)	1105, 1324
HspAI	GCGC	2 cut(s)	15, 779
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
KspI	CCGCGG	2 cut(s)	130, 247
Kzo9I	GATC	4 cut(s)	288, 520, 1147, 1258
LmnI	GCTCC	4 cut(s)	154, 230, 529, 541
Lsp1109I	GCAGC	2 cut(s)	346, 613
LweI	GCATC	4 cut(s)	397, 901, 913, 1018
MaeII	ACGT	2 cut(s)	330, 352
MaeIII	GTNAC	3 cut(s)	326, 348, 1171
MalI	GATC	4 cut(s)	290, 522, 1149, 1260
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	4 cut(s)	288, 520, 1147, 1258
MboII	GAAGA	9 cut(s)	151, 385, 416, 581, 657, 708, 1051, 1205, 1211
MfeI	CAATTG	1 cut(s)	937
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	3 cut(s)	482, 534, 546
MluCI	AATT	4 cut(s)	513, 557, 937, 1140
MlyI	GAGTC	2 cut(s)	191, 356
MmeI	TCCRAC	2 cut(s)	123, 231
Mph1103I	ATGCAT	1 cut(s)	928
MroNI	GCCGGC	1 cut(s)	233
MroXI	GAANNNNTTC	2 cut(s)	1049, 1122
MseI	TTAA	1 cut(s)	981
MspA1I	CMGCKG	4 cut(s)	105, 129, 246, 1158
MunI	CAATTG	1 cut(s)	937
MvaI	CCWGG	3 cut(s)	228, 1280, 1290
MvnI	CGCG	4 cut(s)	41, 129, 246, 1263
MwoI	GCNNNNNNNGC	7 cut(s)	111, 132, 243, 466, 550, 898, 1290
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	8 cut(s)	297, 341, 457, 482, 547, 565, 566, 783
NdeI	CATATG	1 cut(s)	1063
NdeII	GATC	4 cut(s)	288, 520, 1147, 1258
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	2 cut(s)	1105, 1324
NlaIV	GGNNCC	7 cut(s)	232, 454, 480, 522, 531, 543, 838
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	2 cut(s)	326, 348
NruI	TCGCGA	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	928
PdiI	GCCGGC	1 cut(s)	235
PdmI	GAANNNNTTC	2 cut(s)	1049, 1122
PfeI	GAWTC	7 cut(s)	24, 203, 365, 418, 505, 850, 1238
PflMI	CCANNNNNTGG	2 cut(s)	496, 1321
PleI	GAGTC	2 cut(s)	191, 355
PmaCI	CACGTG	2 cut(s)	331, 353
PmlI	CACGTG	2 cut(s)	331, 353
PpsI	GAGTC	2 cut(s)	191, 355
Ppu21I	YACGTR	2 cut(s)	331, 353
Psp6I	CCWGG	3 cut(s)	226, 1278, 1288
PspCI	CACGTG	2 cut(s)	331, 353
PspFI	CCCAGC	1 cut(s)	1293
PspGI	CCWGG	3 cut(s)	226, 1278, 1288
PspN4I	GGNNCC	7 cut(s)	232, 454, 480, 522, 531, 543, 838
PspOMI	GGGCCC	1 cut(s)	478
PspPI	GGNCC	7 cut(s)	134, 468, 478, 479, 487, 836, 1160
PsuI	RGATCY	1 cut(s)	520
RruI	TCGCGA	1 cut(s)	41
RsaI	GTAC	2 cut(s)	1154, 1233
RsaNI	GTAC	2 cut(s)	1153, 1232
SacII	CCGCGG	2 cut(s)	130, 247
SaqAI	TTAA	1 cut(s)	981
Sau3AI	GATC	4 cut(s)	288, 520, 1147, 1258
Sau96I	GGNCC	7 cut(s)	134, 468, 478, 479, 487, 836, 1160
SchI	GAGTC	2 cut(s)	191, 356
SduI	GDGCHC	3 cut(s)	482, 534, 546
SfaNI	GCATC	4 cut(s)	397, 901, 913, 1018
SfiI	GGCCNNNNNGGCC	1 cut(s)	132
Sfr303I	CCGCGG	2 cut(s)	130, 247
SgrBI	CCGCGG	2 cut(s)	130, 247
SinI	GGWCC	1 cut(s)	1160
SmaI	CCCGGG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	1034
SmoI	CTYRAG	1 cut(s)	1034
Sse9I	AATT	4 cut(s)	513, 557, 937, 1140
TaiI	ACGT	2 cut(s)	333, 355
TaqI	TCGA	3 cut(s)	121, 921, 1146
TasI	AATT	4 cut(s)	513, 557, 937, 1140
TatI	WGTACW	1 cut(s)	1152
TfiI	GAWTC	7 cut(s)	24, 203, 365, 418, 505, 850, 1238
Tru1I	TTAA	1 cut(s)	981
Tru9I	TTAA	1 cut(s)	981
TscAI	CASTG	1 cut(s)	1261
TseFI	GTSAC	2 cut(s)	326, 348
TseI	GCWGC	2 cut(s)	334, 601
Tsp45I	GTSAC	2 cut(s)	326, 348
TspDTI	ATGAA	4 cut(s)	863, 1017, 1058, 1309
TspGWI	ACGGA	1 cut(s)	1349
TspMI	CCCGGG	1 cut(s)	564
TspRI	CASTG	1 cut(s)	1261
Van91I	CCANNNNNTGG	2 cut(s)	496, 1321
VpaK11BI	GGWCC	1 cut(s)	1160
XagI	CCTNNNNNAGG	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1286
XmaI	CCCGGG	1 cut(s)	564
XmnI	GAANNNNTTC	2 cut(s)	1049, 1122
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.