Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007722

Physical Location & Seq

Genomic Coordinates Reverse (-)

77864621 .. 77868773

Gene Structure 4153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00056100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGAGAGGAGGAAGCGCCATAGGAATCGGCAGAAAGCTCGCGAACCCATCAAGCTTCTCCATTTCCAGACAAACCCTACTCCCGTTTTCCACTTCCTCCAACAGCGGCGGCGGCCGAGGTCGCGGCCGCGGCGGCCCATCTCCCACCGCTCCTTCTCTCTTCAACTACCTCGCCGAACAGTTCCCGCCTCAACCCGACTCCGAATCCGACCCGCCCCCACCTCTCCCGGGAGCCGGCCACGGCCGCGGCAAACCCTTATCCCAACCTCCGCCTTCCTTCGCCTCGGGGATCAAACCCGGTTCGTCCGCCGGTCGGGGAGTCCCGGGTCACGTGCAGCCCCCGGCAGAGTCACGTGAGGGAGATGATTCGGGTTTACCCAAGAAGCCCGTTTTCTTCAGACGGGAAGATGCGGAGGAGAATCTAACGGCGGGTTTGATGACGGCGTTGGGCGGAACCGGGCGGGGGAGGCCCATTTCGGGCCCGGCGGCCCAAAGTGTGGAGGAGAATCGGCAGATTGGGGCTCCGGTGGAGCCCCAGAGGGAGCCCAGGAAGCCGAAATTGACCCGGGAAGAGGCGGTGAAGCAGGCAATGGGGATATTGCAGCAGGGAGGCGGTGAGGGAGCGGAGGTTGATGGTGGTGGTGGTGGAAGAGGGAGAGGAGGAGAGAGAGGGATGAGAGGGAGAGGAGGAGGAAGAGGAAGAGGAAGAGGGAGAGGAGGGCGGGGAAGGAGAGAAGGAGAAGGAGATAGGAGAAGGCAGGGGGATGGGGATGGCGGCATTGCGCCGGGGCTTTATCTTGGGGACAATGCCGATGGGGAGAAGCTGGCTAAGAGGCTTGGCCCGGAAGTTATGAATCAGTTGGCTGAAGCATTTGAGGATATGAGTAATCAAGTGCTTCCCTCGCCTTTGGATGATGCGTATGTCGACGCATTGGATACCAATTGTATGATTGAGTTTGAGCCGGAGTATCTTATGGGGGAGTTTAATCAAAACCCAGATATTGATGAAAAACCGCCTATTCCTCTCAGGGATGCACTTGAGAAGCTGAAGCCTTTCTTGATGGCATATGAGGGTATTCAAAGTCAAGAGGAGTGGGAGGAAGCCATGAAGGAGACAATGGAAAGAGTTCCATTGTTGAAGGAAATTGTCGATCAGTACAGCGGACCAGATAGGGTAACTGCAAAGAAACAACAAGAAGAGTTAGAAAGAGTTGCAAAAACTCTTCCTGCAAAAGTACCTGATTCTGTAAAGCAGTTCACTGATCGCGTGGTGCTTTCTCTCCAGGGCAACCCTGGCTGGGGATTTCACAGGAAATGCCAGTTCATGGATAAGCTAACGGAAAAGGTTTCCAAGCACTACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

454

Amino Acids

48.73

Weight (kDa)

6.96

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53645
fragaria_vesca	FvH4_3g14000 FvH4_3g14000
malus_domestica	MD05G1239100.v1.1 MD10G1217100.v1.1
prunus_persica	Prupe.4G127000_v2.0.a1
pyrus_communis	pycom05g21540 pycom10g18320
rosa_chinensis	RchiOBHm_Chr5g0023231 RchiOBHm_Chr5g0023281
rosa_laevigata	RLG00000032711
rosa_multiflora	Rmu_sc0002343.1_g000043 Rmu_sc0009954.1_g000001 Rmu_sc0009954.1_g000004 Rmu_sc0011343.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056100
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164300 Rh5BG163800 Rh5CG179000 Rh5DG165600 Rh5DG266700
rosa_wichuraiana	Rw5G014840 Rw7G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	496, 1324
AccBSI	CCGCTC	2 cut(s)	149, 623
AccI	GTMKAC	1 cut(s)	924
AccII	CGCG	5 cut(s)	41, 123, 129, 246, 1266
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	4 cut(s)	112, 124, 235, 241
AcuI	CTGAAG	3 cut(s)	379, 885, 1067
AcvI	CACGTG	2 cut(s)	331, 353
AfaI	GTAC	2 cut(s)	1157, 1236
AgsI	TTSAA	3 cut(s)	163, 1079, 1138
AjnI	CCWGG	3 cut(s)	545, 1281, 1291
AluBI	AGCT	5 cut(s)	37, 54, 823, 1045, 1333
AluI	AGCT	5 cut(s)	37, 54, 823, 1045, 1333
Alw26I	GTCTC	1 cut(s)	1106
AlwI	GGATC	1 cut(s)	296
Ama87I	CYCGRG	4 cut(s)	226, 283, 322, 564
AoxI	GGCC	9 cut(s)	112, 124, 133, 235, 241, 467, 478, 486, 838
ApaI	GGGCCC	1 cut(s)	482
ApeKI	GCWGC	2 cut(s)	334, 601
Asp700I	GAANNNNTTC	2 cut(s)	1052, 1125
AspLEI	GCGC	2 cut(s)	17, 784
AspS9I	GGNCC	7 cut(s)	134, 468, 478, 479, 487, 839, 1163
AsuHPI	GGTGA	2 cut(s)	589, 626
AvaI	CYCGRG	4 cut(s)	226, 283, 322, 564
AvaII	GGWCC	1 cut(s)	1163
BaeGI	GKGCMC	1 cut(s)	482
BanII	GRGCYC	4 cut(s)	482, 523, 534, 546
BbrPI	CACGTG	2 cut(s)	331, 353
BbvI	GCAGC	2 cut(s)	346, 613
BccI	CCATC	7 cut(s)	55, 145, 626, 758, 764, 806, 1054
BceAI	ACGGC	3 cut(s)	256, 441, 456
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	3 cut(s)	547, 1283, 1293
BciVI	GTATCC	1 cut(s)	928
BcoDI	GTCTC	1 cut(s)	1106
BfoI	RGCGCY	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	928
BglI	GCCNNNNNGGC	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	1163
BmeT110I	CYCGRG	4 cut(s)	226, 283, 322, 564
BmgT120I	GGNCC	7 cut(s)	134, 468, 478, 479, 487, 839, 1163
BmiI	GGNNCC	6 cut(s)	232, 454, 480, 522, 531, 543
BmsI	GCATC	3 cut(s)	397, 904, 1021
BpmI	CTGGAG	1 cut(s)	1265
BpuEI	CTTGAG	1 cut(s)	1058
BsaAI	YACGTR	2 cut(s)	331, 353
BsaWI	WCCGGW	1 cut(s)	523
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bse118I	RCCGGY	2 cut(s)	233, 308
Bse1I	ACTGG	1 cut(s)	1318
Bse3DI	GCAATG	2 cut(s)	594, 777
BseBI	CCWGG	3 cut(s)	547, 1283, 1293
BseGI	GGATG	5 cut(s)	678, 769, 775, 916, 1036
BseMI	GCAATG	2 cut(s)	594, 777
BseMII	CTCAG	1 cut(s)	1039
BseNI	ACTGG	1 cut(s)	1318
BseRI	GAGGAG	9 cut(s)	21, 428, 515, 672, 675, 699, 702, 729, 1103
BseSI	GKGCMC	1 cut(s)	482
BseX3I	CGGCCG	3 cut(s)	112, 124, 241
BseXI	GCAGC	2 cut(s)	346, 613
BseYI	CCCAGC	1 cut(s)	1296
BsgI	GTGCAG	1 cut(s)	353
Bsh1236I	CGCG	5 cut(s)	41, 123, 129, 246, 1266
Bsh1285I	CGRYCG	4 cut(s)	115, 127, 244, 313
BshFI	GGCC	9 cut(s)	114, 126, 135, 237, 243, 469, 480, 488, 840
BsiEI	CGRYCG	4 cut(s)	115, 127, 244, 313
BsiHKCI	CYCGRG	4 cut(s)	226, 283, 322, 564
BslFI	GGGAC	2 cut(s)	305, 815
BsmAI	GTCTC	1 cut(s)	1106
BsmFI	GGGAC	2 cut(s)	305, 815
BsnI	GGCC	9 cut(s)	114, 126, 135, 237, 243, 469, 480, 488, 840
BsoBI	CYCGRG	4 cut(s)	226, 283, 322, 564
Bsp120I	GGGCCC	1 cut(s)	478
Bsp1286I	GDGCHC	4 cut(s)	482, 523, 534, 546
Bsp143I	GATC	3 cut(s)	288, 1150, 1261
Bsp68I	TCGCGA	1 cut(s)	41
BspANI	GGCC	9 cut(s)	114, 126, 135, 237, 243, 469, 480, 488, 840
BspCNI	CTCAG	1 cut(s)	1038
BspFNI	CGCG	5 cut(s)	41, 123, 129, 246, 1266
BspLI	GGNNCC	6 cut(s)	232, 454, 480, 522, 531, 543
BspPI	GGATC	1 cut(s)	296
BsrBI	CCGCTC	2 cut(s)	149, 623
BsrDI	GCAATG	2 cut(s)	594, 777
BsrFI	RCCGGY	2 cut(s)	233, 308
BsrI	ACTGG	1 cut(s)	1318
BssAI	RCCGGY	2 cut(s)	233, 308
BssMI	GATC	3 cut(s)	288, 1150, 1261
Bst2UI	CCWGG	3 cut(s)	547, 1283, 1293
Bst4CI	ACNGT	1 cut(s)	180
Bst6I	CTCTTC	8 cut(s)	164, 564, 643, 688, 694, 700, 1191, 1227
BstBAI	YACGTR	2 cut(s)	331, 353
BstC8I	GCNNGC	4 cut(s)	39, 235, 585, 825
BstDEI	CTNAG	2 cut(s)	828, 1025
BstDSI	CCRYGG	3 cut(s)	127, 238, 244
BstF5I	GGATG	5 cut(s)	678, 769, 775, 916, 1036
BstFNI	CGCG	5 cut(s)	41, 123, 129, 246, 1266
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 784
BstKTI	GATC	3 cut(s)	291, 1153, 1264
BstMAI	GTCTC	1 cut(s)	1106
BstMBI	GATC	3 cut(s)	288, 1150, 1261
BstMCI	CGRYCG	4 cut(s)	115, 127, 244, 313
BstMWI	GCNNNNNNNGC	9 cut(s)	111, 120, 129, 132, 243, 466, 550, 901, 1293
BstNI	CCWGG	3 cut(s)	547, 1283, 1293
BstSLI	GKGCMC	1 cut(s)	482
BstUI	CGCG	5 cut(s)	41, 123, 129, 246, 1266
BstV1I	GCAGC	2 cut(s)	346, 613
BstZI	CGGCCG	3 cut(s)	112, 124, 241
BsuI	GTATCC	1 cut(s)	928
BsuRI	GGCC	9 cut(s)	114, 126, 135, 237, 243, 469, 480, 488, 840
BtgI	CCRYGG	3 cut(s)	127, 238, 244
BtsCI	GGATG	5 cut(s)	678, 769, 775, 916, 1036
BtsIMutI	CAGTG	1 cut(s)	1257
BtuMI	TCGCGA	1 cut(s)	41
Cac8I	GCNNGC	4 cut(s)	39, 235, 585, 825
CciNI	GCGGCCGC	1 cut(s)	124
CfoI	GCGC	2 cut(s)	17, 784
Cfr10I	RCCGGY	2 cut(s)	233, 308
Cfr13I	GGNCC	7 cut(s)	134, 468, 478, 479, 487, 839, 1163
Cfr42I	CCGCGG	2 cut(s)	130, 247
Cfr9I	CCCGGG	3 cut(s)	226, 322, 564
CseI	GACGC	1 cut(s)	935
Csp6I	GTAC	2 cut(s)	1156, 1235
CspCI	CAANNNNNGTGG	2 cut(s)	1073, 1108
CviAII	CATG	2 cut(s)	1105, 1324
CviQI	GTAC	2 cut(s)	1156, 1235
DdeI	CTNAG	2 cut(s)	828, 1025
DpnI	GATC	3 cut(s)	290, 1152, 1263
DpnII	GATC	3 cut(s)	288, 1150, 1261
EaeI	YGGCCR	4 cut(s)	112, 124, 235, 241
EagI	CGGCCG	3 cut(s)	112, 124, 241
Eam1104I	CTCTTC	8 cut(s)	164, 564, 643, 688, 694, 700, 1191, 1227
EarI	CTCTTC	8 cut(s)	164, 564, 643, 688, 694, 700, 1191, 1227
EciI	GGCGGA	3 cut(s)	258, 295, 465
EclXI	CGGCCG	3 cut(s)	112, 124, 241
Eco24I	GRGCYC	4 cut(s)	482, 523, 534, 546
Eco47I	GGWCC	1 cut(s)	1163
Eco52I	CGGCCG	3 cut(s)	112, 124, 241
Eco57I	CTGAAG	3 cut(s)	379, 885, 1067
Eco72I	CACGTG	2 cut(s)	331, 353
Eco88I	CYCGRG	4 cut(s)	226, 283, 322, 564
EcoRII	CCWGG	3 cut(s)	545, 1281, 1291
EcoT38I	GRGCYC	4 cut(s)	482, 523, 534, 546
FaeI	CATG	2 cut(s)	1108, 1327
FalI	AAGNNNNNCTT	2 cut(s)	1040, 1072
FaqI	GGGAC	2 cut(s)	305, 815
FatI	CATG	2 cut(s)	1104, 1323
FauI	CCCGC	5 cut(s)	192, 219, 421, 453, 714
FauNDI	CATATG	1 cut(s)	1066
FblI	GTMKAC	1 cut(s)	924
FokI	GGATG	5 cut(s)	685, 776, 782, 923, 1043
FriOI	GRGCYC	4 cut(s)	482, 523, 534, 546
GlaI	GCGC	2 cut(s)	16, 783
GsaI	CCCAGC	1 cut(s)	1300
GsuI	CTGGAG	1 cut(s)	1265
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	9 cut(s)	114, 126, 135, 237, 243, 469, 480, 488, 840
HgaI	GACGC	1 cut(s)	935
HhaI	GCGC	2 cut(s)	17, 784
Hin1II	CATG	2 cut(s)	1108, 1327
Hin6I	GCGC	2 cut(s)	15, 782
HinP1I	GCGC	2 cut(s)	15, 782
HincII	GTYRAC	1 cut(s)	925
HindII	GTYRAC	1 cut(s)	925
HindIII	AAGCTT	1 cut(s)	52
HphI	GGTGA	2 cut(s)	589, 626
Hpy166II	GTNNAC	3 cut(s)	374, 925, 1257
Hpy188I	TCNGA	3 cut(s)	202, 208, 398
Hpy188III	TCNNGA	4 cut(s)	40, 66, 1057, 1085
Hpy8I	GTNNAC	3 cut(s)	374, 925, 1257
Hpy99I	CGWCG	1 cut(s)	929
HpyAV	CCTTC	9 cut(s)	162, 282, 286, 720, 728, 734, 747, 1102, 1132
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4IV	ACGT	2 cut(s)	330, 352
HpyCH4V	TGCA	6 cut(s)	334, 601, 1034, 1181, 1214, 1229
HpyF10VI	GCNNNNNNNGC	9 cut(s)	111, 120, 129, 132, 243, 466, 550, 901, 1293
HpyF3I	CTNAG	2 cut(s)	828, 1025
HpySE526I	ACGT	2 cut(s)	330, 352
Hsp92II	CATG	2 cut(s)	1108, 1327
HspAI	GCGC	2 cut(s)	15, 782
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
KspI	CCGCGG	2 cut(s)	130, 247
Kzo9I	GATC	3 cut(s)	288, 1150, 1261
LmnI	GCTCC	6 cut(s)	154, 230, 526, 529, 541, 620
Lsp1109I	GCAGC	2 cut(s)	346, 613
LweI	GCATC	3 cut(s)	397, 904, 1021
MaeII	ACGT	2 cut(s)	330, 352
MaeIII	GTNAC	3 cut(s)	326, 348, 1174
MalI	GATC	3 cut(s)	290, 1152, 1263
MbiI	CCGCTC	2 cut(s)	149, 623
MboI	GATC	3 cut(s)	288, 1150, 1261
MfeI	CAATTG	1 cut(s)	940
MhlI	GDGCHC	4 cut(s)	482, 523, 534, 546
MluCI	AATT	3 cut(s)	557, 940, 1143
MlyI	GAGTC	3 cut(s)	191, 327, 356
MmeI	TCCRAC	2 cut(s)	123, 231
MroNI	GCCGGC	1 cut(s)	233
MroXI	GAANNNNTTC	2 cut(s)	1052, 1125
MseI	TTAA	1 cut(s)	984
MspA1I	CMGCKG	4 cut(s)	105, 129, 246, 1161
MunI	CAATTG	1 cut(s)	940
MvaI	CCWGG	3 cut(s)	547, 1283, 1293
MvnI	CGCG	5 cut(s)	41, 123, 129, 246, 1266
MwoI	GCNNNNNNNGC	9 cut(s)	111, 120, 129, 132, 243, 466, 550, 901, 1293
NaeI	GCCGGC	1 cut(s)	235
NdeI	CATATG	1 cut(s)	1066
NdeII	GATC	3 cut(s)	288, 1150, 1261
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	2 cut(s)	1108, 1327
NlaIV	GGNNCC	6 cut(s)	232, 454, 480, 522, 531, 543
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	2 cut(s)	326, 348
NotI	GCGGCCGC	1 cut(s)	124
NruI	TCGCGA	1 cut(s)	41
PdiI	GCCGGC	1 cut(s)	235
PdmI	GAANNNNTTC	2 cut(s)	1052, 1125
PfeI	GAWTC	7 cut(s)	24, 203, 365, 418, 505, 853, 1241
PflMI	CCANNNNNTGG	2 cut(s)	496, 1324
PleI	GAGTC	3 cut(s)	191, 326, 355
PmaCI	CACGTG	2 cut(s)	331, 353
PmlI	CACGTG	2 cut(s)	331, 353
PpsI	GAGTC	3 cut(s)	191, 326, 355
Ppu21I	YACGTR	2 cut(s)	331, 353
Psp6I	CCWGG	3 cut(s)	545, 1281, 1291
PspCI	CACGTG	2 cut(s)	331, 353
PspFI	CCCAGC	1 cut(s)	1296
PspGI	CCWGG	3 cut(s)	545, 1281, 1291
PspN4I	GGNNCC	6 cut(s)	232, 454, 480, 522, 531, 543
PspOMI	GGGCCC	1 cut(s)	478
PspPI	GGNCC	7 cut(s)	134, 468, 478, 479, 487, 839, 1163
RruI	TCGCGA	1 cut(s)	41
RsaI	GTAC	2 cut(s)	1157, 1236
RsaNI	GTAC	2 cut(s)	1156, 1235
SacII	CCGCGG	2 cut(s)	130, 247
SalI	GTCGAC	1 cut(s)	923
SaqAI	TTAA	1 cut(s)	984
Sau3AI	GATC	3 cut(s)	288, 1150, 1261
Sau96I	GGNCC	7 cut(s)	134, 468, 478, 479, 487, 839, 1163
SchI	GAGTC	3 cut(s)	191, 327, 356
SduI	GDGCHC	4 cut(s)	482, 523, 534, 546
SfaNI	GCATC	3 cut(s)	397, 904, 1021
SfiI	GGCCNNNNNGGCC	1 cut(s)	132
Sfr303I	CCGCGG	2 cut(s)	130, 247
SgrBI	CCGCGG	2 cut(s)	130, 247
SinI	GGWCC	1 cut(s)	1163
SmaI	CCCGGG	3 cut(s)	228, 324, 566
SmlI	CTYRAG	1 cut(s)	1037
SmoI	CTYRAG	1 cut(s)	1037
Sse9I	AATT	3 cut(s)	557, 940, 1143
TaaI	ACNGT	1 cut(s)	180
TaiI	ACGT	2 cut(s)	333, 355
TaqI	TCGA	2 cut(s)	924, 1149
TasI	AATT	3 cut(s)	557, 940, 1143
TatI	WGTACW	1 cut(s)	1155
TfiI	GAWTC	7 cut(s)	24, 203, 365, 418, 505, 853, 1241
Tru1I	TTAA	1 cut(s)	984
Tru9I	TTAA	1 cut(s)	984
TscAI	CASTG	1 cut(s)	1264
TseFI	GTSAC	2 cut(s)	326, 348
TseI	GCWGC	2 cut(s)	334, 601
Tsp45I	GTSAC	2 cut(s)	326, 348
TspDTI	ATGAA	4 cut(s)	866, 1020, 1121, 1312
TspGWI	ACGGA	1 cut(s)	1352
TspMI	CCCGGG	3 cut(s)	226, 322, 564
TspRI	CASTG	1 cut(s)	1264
Van91I	CCANNNNNTGG	2 cut(s)	496, 1324
VpaK11BI	GGWCC	1 cut(s)	1163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1289
XmaI	CCCGGG	3 cut(s)	226, 322, 564
XmiI	GTMKAC	1 cut(s)	924
XmnI	GAANNNNTTC	2 cut(s)	1052, 1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.