Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009954.1

Orthogroup ID

OG0007722

Physical Location & Seq

Genomic Coordinates Forward (+)

6504 .. 10150

Gene Structure 3647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009954.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

atgagaggaggaagcgccataggaatcggcagaaagctcgcgaactcatcaagcttctccatttccagacaaaccctactcccgttttccacttcctccaacagcggcggcggcggcggccgtggtcggggccgcggcggcccaactcccaccgctccttctctcttcaactacctcgccgaccagttcccgcctcaacccgactccgaatccgacccgcccccacctctcccaggagccggccacggccgcggcaaacccttatcccaacctccgccttccttcgcctcggggatcaaacccagttcggccgccggtcggggccatccgggtcacgtgcagcccccgtcagagtcacgtgagggagatgattcgggtttacccaagaagcccgttttcttcagacgggaagatgcggaggagaatctaccggcgggtttgatgacggcgttgggcggaaccgggcgggggaggcccatttcgggcccggcggcccaaaatgtggaggagaatcggcagattggggctccggtggagccccagagggagcccaggaagccgaaattgacccgggaagaggcggtgaagcaggcaatggggatattgcagcagggaggcggtgagggagcggaggttgatggtggtggtggtggaagagggagaggaggagagagagggatgagagggagaggaggaggaagaggaagagggagagggagaggagggaggggaaggagagaaggagaaggagataggagaaggcaaggggatggggatggggatggcggcattgcgctggggctctatcttggggacaatgccgatggggagaagctggctaagaggcttggcccggaagttatgaatcagttgactgaagcatttgaggatatgagtaatcaagtgcttccgtcgccattggatgatgcttatgtcgatgcattggataccaattgtatgattgagtttgagccagagtatcttatgggggagtttaatcaaaacccagatattgatgaaaaaccgcctattcctctccgggatgcacttgagaagatgaagcctttcttgatggcatatgagggaattcaaagtcaagaggagtgggaggaagccatgcaggagacaatggaaagagttccattgttgaaggaaattgtcgatcagtacagcggaccagatagggtaactgcaaagaaacaacaagaagagttagaaagagttgcaaaaactcttcctgcaaaagtacctgattctgtaaagcatttcactgatcgcgtggtgctttctctccagggcaaccctggctggggatttcacaggaaatgccagttcatggataagctaacggaaaaggtttccaagcactacaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

458

Amino Acids

49.17

Weight (kDa)

6.4

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53645
fragaria_vesca	FvH4_3g14000 FvH4_3g14000
malus_domestica	MD05G1239100.v1.1 MD10G1217100.v1.1
prunus_persica	Prupe.4G127000_v2.0.a1
pyrus_communis	pycom05g21540 pycom10g18320
rosa_chinensis	RchiOBHm_Chr5g0023231 RchiOBHm_Chr5g0023281
rosa_laevigata	RLG00000032711
rosa_multiflora	Rmu_sc0002343.1_g000043 Rmu_sc0009954.1_g000001 Rmu_sc0009954.1_g000004 Rmu_sc0011343.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056100
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164300 Rh5BG163800 Rh5CG179000 Rh5DG165600 Rh5DG266700
rosa_wichuraiana	Rw5G014840 Rw7G027010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	502, 1336
AccBSI	CCGCTC	2 cut(s)	155, 629
AccII	CGCG	4 cut(s)	41, 135, 252, 1278
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	4 cut(s)	118, 241, 247, 309
AcsI	RAATTY	1 cut(s)	1086
AcuI	CTGAAG	2 cut(s)	385, 897
AcvI	CACGTG	2 cut(s)	337, 359
AfaI	GTAC	2 cut(s)	1169, 1248
AgsI	TTSAA	3 cut(s)	169, 1091, 1150
AjnI	CCWGG	4 cut(s)	232, 551, 1293, 1303
AluBI	AGCT	4 cut(s)	37, 54, 835, 1345
AluI	AGCT	4 cut(s)	37, 54, 835, 1345
Alw26I	GTCTC	1 cut(s)	1118
AlwI	GGATC	1 cut(s)	302
Ama87I	CYCGRG	2 cut(s)	289, 570
ApaI	GGGCCC	1 cut(s)	488
ApeKI	GCWGC	2 cut(s)	340, 607
ApoI	RAATTY	1 cut(s)	1086
Asp700I	GAANNNNTTC	2 cut(s)	1064, 1137
AspLEI	GCGC	2 cut(s)	17, 796
AspS9I	GGNCC	9 cut(s)	130, 140, 322, 474, 484, 485, 493, 851, 1175
AsuC2I	CCSGG	7 cut(s)	330, 463, 488, 571, 572, 854, 1040
AsuHPI	GGTGA	2 cut(s)	595, 632
AvaI	CYCGRG	2 cut(s)	289, 570
AvaII	GGWCC	1 cut(s)	1175
BaeGI	GKGCMC	1 cut(s)	488
BanII	GRGCYC	5 cut(s)	488, 529, 540, 552, 804
BbrPI	CACGTG	2 cut(s)	337, 359
BbvI	GCAGC	2 cut(s)	352, 619
BccI	CCATC	7 cut(s)	333, 632, 764, 770, 776, 818, 1066
BceAI	ACGGC	3 cut(s)	105, 262, 462
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	4 cut(s)	234, 553, 1295, 1305
BciVI	GTATCC	1 cut(s)	940
BcnI	CCSGG	7 cut(s)	330, 463, 488, 571, 572, 854, 1040
BcoDI	GTCTC	1 cut(s)	1118
BfoI	RGCGCY	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	940
BglI	GCCNNNNNGGC	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	1175
BmeT110I	CYCGRG	2 cut(s)	289, 570
BmgT120I	GGNCC	9 cut(s)	130, 140, 322, 474, 484, 485, 493, 851, 1175
BmiI	GGNNCC	8 cut(s)	131, 238, 323, 460, 486, 528, 537, 549
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	4 cut(s)	403, 916, 928, 1033
BmuI	ACTGGG	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	1277
BpuEI	CTTGAG	1 cut(s)	1070
BpuMI	CCSGG	7 cut(s)	330, 463, 488, 571, 572, 854, 1040
BsaAI	YACGTR	2 cut(s)	337, 359
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bse118I	RCCGGY	3 cut(s)	239, 314, 430
Bse1I	ACTGG	3 cut(s)	184, 303, 1330
Bse3DI	GCAATG	2 cut(s)	600, 789
BseBI	CCWGG	4 cut(s)	234, 553, 1295, 1305
BseGI	GGATG	7 cut(s)	325, 684, 775, 781, 787, 928, 1048
BseMI	GCAATG	2 cut(s)	600, 789
BseNI	ACTGG	3 cut(s)	184, 303, 1330
BseRI	GAGGAG	9 cut(s)	21, 434, 521, 678, 681, 705, 708, 735, 1115
BseSI	GKGCMC	1 cut(s)	488
BseX3I	CGGCCG	3 cut(s)	118, 247, 309
BseXI	GCAGC	2 cut(s)	352, 619
BseYI	CCCAGC	2 cut(s)	796, 1308
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	4 cut(s)	41, 135, 252, 1278
Bsh1285I	CGRYCG	4 cut(s)	121, 250, 312, 319
BsiEI	CGRYCG	4 cut(s)	121, 250, 312, 319
BsiHKCI	CYCGRG	2 cut(s)	289, 570
BslFI	GGGAC	1 cut(s)	827
BsmAI	GTCTC	1 cut(s)	1118
BsmFI	GGGAC	1 cut(s)	827
BsoBI	CYCGRG	2 cut(s)	289, 570
Bsp120I	GGGCCC	1 cut(s)	484
Bsp1286I	GDGCHC	5 cut(s)	488, 529, 540, 552, 804
Bsp143I	GATC	3 cut(s)	294, 1162, 1273
Bsp68I	TCGCGA	1 cut(s)	41
BspFNI	CGCG	4 cut(s)	41, 135, 252, 1278
BspLI	GGNNCC	8 cut(s)	131, 238, 323, 460, 486, 528, 537, 549
BspPI	GGATC	1 cut(s)	302
BsrBI	CCGCTC	2 cut(s)	155, 629
BsrDI	GCAATG	2 cut(s)	600, 789
BsrFI	RCCGGY	3 cut(s)	239, 314, 430
BsrI	ACTGG	3 cut(s)	184, 303, 1330
BssAI	RCCGGY	3 cut(s)	239, 314, 430
BssMI	GATC	3 cut(s)	294, 1162, 1273
Bst2UI	CCWGG	4 cut(s)	234, 553, 1295, 1305
Bst6I	CTCTTC	7 cut(s)	170, 570, 649, 694, 700, 1203, 1239
BstBAI	YACGTR	2 cut(s)	337, 359
BstC8I	GCNNGC	4 cut(s)	39, 241, 591, 837
BstDEI	CTNAG	1 cut(s)	840
BstDSI	CCRYGG	4 cut(s)	121, 133, 244, 250
BstENI	CCTNNNNNAGG	1 cut(s)	231
BstF5I	GGATG	7 cut(s)	325, 684, 775, 781, 787, 928, 1048
BstFNI	CGCG	4 cut(s)	41, 135, 252, 1278
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 796
BstKTI	GATC	3 cut(s)	297, 1165, 1276
BstMAI	GTCTC	1 cut(s)	1118
BstMBI	GATC	3 cut(s)	294, 1162, 1273
BstMCI	CGRYCG	4 cut(s)	121, 250, 312, 319
BstMWI	GCNNNNNNNGC	9 cut(s)	111, 114, 117, 138, 249, 472, 556, 913, 1305
BstNI	CCWGG	4 cut(s)	234, 553, 1295, 1305
BstSLI	GKGCMC	1 cut(s)	488
BstUI	CGCG	4 cut(s)	41, 135, 252, 1278
BstV1I	GCAGC	2 cut(s)	352, 619
BstZI	CGGCCG	3 cut(s)	118, 247, 309
BsuI	GTATCC	1 cut(s)	940
BtgI	CCRYGG	4 cut(s)	121, 133, 244, 250
BtsCI	GGATG	7 cut(s)	325, 684, 775, 781, 787, 928, 1048
BtsIMutI	CAGTG	1 cut(s)	1269
BtuMI	TCGCGA	1 cut(s)	41
Cac8I	GCNNGC	4 cut(s)	39, 241, 591, 837
CfoI	GCGC	2 cut(s)	17, 796
Cfr10I	RCCGGY	3 cut(s)	239, 314, 430
Cfr13I	GGNCC	9 cut(s)	130, 140, 322, 474, 484, 485, 493, 851, 1175
Cfr42I	CCGCGG	2 cut(s)	136, 253
Cfr9I	CCCGGG	1 cut(s)	570
Csp6I	GTAC	2 cut(s)	1168, 1247
CspCI	CAANNNNNGTGG	2 cut(s)	1085, 1120
CviAII	CATG	2 cut(s)	1117, 1336
CviQI	GTAC	2 cut(s)	1168, 1247
DdeI	CTNAG	1 cut(s)	840
DpnI	GATC	3 cut(s)	296, 1164, 1275
DpnII	GATC	3 cut(s)	294, 1162, 1273
EaeI	YGGCCR	4 cut(s)	118, 241, 247, 309
EagI	CGGCCG	3 cut(s)	118, 247, 309
Eam1104I	CTCTTC	7 cut(s)	170, 570, 649, 694, 700, 1203, 1239
EarI	CTCTTC	7 cut(s)	170, 570, 649, 694, 700, 1203, 1239
EciI	GGCGGA	2 cut(s)	264, 471
EclXI	CGGCCG	3 cut(s)	118, 247, 309
Eco24I	GRGCYC	5 cut(s)	488, 529, 540, 552, 804
Eco47I	GGWCC	1 cut(s)	1175
Eco52I	CGGCCG	3 cut(s)	118, 247, 309
Eco57I	CTGAAG	2 cut(s)	385, 897
Eco72I	CACGTG	2 cut(s)	337, 359
Eco88I	CYCGRG	2 cut(s)	289, 570
EcoNI	CCTNNNNNAGG	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	1086
EcoRII	CCWGG	4 cut(s)	232, 551, 1293, 1303
EcoT22I	ATGCAT	1 cut(s)	943
EcoT38I	GRGCYC	5 cut(s)	488, 529, 540, 552, 804
FaeI	CATG	2 cut(s)	1120, 1339
FalI	AAGNNNNNCTT	2 cut(s)	1052, 1084
FaqI	GGGAC	1 cut(s)	827
FatI	CATG	2 cut(s)	1116, 1335
FauI	CCCGC	4 cut(s)	198, 225, 427, 459
FauNDI	CATATG	1 cut(s)	1078
FokI	GGATG	7 cut(s)	312, 691, 782, 788, 794, 935, 1055
FriOI	GRGCYC	5 cut(s)	488, 529, 540, 552, 804
GlaI	GCGC	2 cut(s)	16, 795
GsaI	CCCAGC	2 cut(s)	800, 1312
GsuI	CTGGAG	1 cut(s)	1277
HaeII	RGCGCY	1 cut(s)	18
HhaI	GCGC	2 cut(s)	17, 796
Hin1II	CATG	2 cut(s)	1120, 1339
Hin6I	GCGC	2 cut(s)	15, 794
HinP1I	GCGC	2 cut(s)	15, 794
HincII	GTYRAC	1 cut(s)	873
HindII	GTYRAC	1 cut(s)	873
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	9 cut(s)	24, 203, 209, 353, 371, 424, 511, 865, 1253
HphI	GGTGA	2 cut(s)	595, 632
Hpy166II	GTNNAC	2 cut(s)	380, 873
Hpy188I	TCNGA	4 cut(s)	208, 214, 352, 404
Hpy188III	TCNNGA	4 cut(s)	40, 66, 1069, 1097
Hpy8I	GTNNAC	2 cut(s)	380, 873
Hpy99I	CGWCG	1 cut(s)	916
HpyAV	CCTTC	8 cut(s)	168, 288, 292, 726, 734, 740, 753, 1144
HpyCH4IV	ACGT	2 cut(s)	336, 358
HpyCH4V	TGCA	8 cut(s)	340, 607, 941, 1046, 1120, 1193, 1226, 1241
HpyF10VI	GCNNNNNNNGC	9 cut(s)	111, 114, 117, 138, 249, 472, 556, 913, 1305
HpyF3I	CTNAG	1 cut(s)	840
HpySE526I	ACGT	2 cut(s)	336, 358
Hsp92II	CATG	2 cut(s)	1120, 1339
HspAI	GCGC	2 cut(s)	15, 794
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
KspI	CCGCGG	2 cut(s)	136, 253
Kzo9I	GATC	3 cut(s)	294, 1162, 1273
LmnI	GCTCC	6 cut(s)	160, 236, 532, 535, 547, 626
Lsp1109I	GCAGC	2 cut(s)	352, 619
LweI	GCATC	4 cut(s)	403, 916, 928, 1033
MaeII	ACGT	2 cut(s)	336, 358
MaeIII	GTNAC	3 cut(s)	332, 354, 1186
MalI	GATC	3 cut(s)	296, 1164, 1275
MbiI	CCGCTC	2 cut(s)	155, 629
MboI	GATC	3 cut(s)	294, 1162, 1273
MfeI	CAATTG	1 cut(s)	952
MhlI	GDGCHC	5 cut(s)	488, 529, 540, 552, 804
MluCI	AATT	4 cut(s)	563, 952, 1086, 1155
MlyI	GAGTC	2 cut(s)	197, 362
MmeI	TCCRAC	2 cut(s)	123, 237
Mph1103I	ATGCAT	1 cut(s)	943
MroNI	GCCGGC	1 cut(s)	239
MroXI	GAANNNNTTC	2 cut(s)	1064, 1137
MseI	TTAA	1 cut(s)	996
MspA1I	CMGCKG	4 cut(s)	105, 135, 252, 1173
MunI	CAATTG	1 cut(s)	952
MvaI	CCWGG	4 cut(s)	234, 553, 1295, 1305
MvnI	CGCG	4 cut(s)	41, 135, 252, 1278
MwoI	GCNNNNNNNGC	9 cut(s)	111, 114, 117, 138, 249, 472, 556, 913, 1305
NaeI	GCCGGC	1 cut(s)	241
NciI	CCSGG	7 cut(s)	330, 463, 488, 571, 572, 854, 1040
NdeI	CATATG	1 cut(s)	1078
NdeII	GATC	3 cut(s)	294, 1162, 1273
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	2 cut(s)	1120, 1339
NlaIV	GGNNCC	8 cut(s)	131, 238, 323, 460, 486, 528, 537, 549
NmuCI	GTSAC	2 cut(s)	332, 354
NruI	TCGCGA	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	943
PdiI	GCCGGC	1 cut(s)	241
PdmI	GAANNNNTTC	2 cut(s)	1064, 1137
PfeI	GAWTC	7 cut(s)	24, 209, 371, 424, 511, 865, 1253
PflMI	CCANNNNNTGG	2 cut(s)	502, 1336
PfoI	TCCNGGA	1 cut(s)	1038
PleI	GAGTC	2 cut(s)	197, 361
PmaCI	CACGTG	2 cut(s)	337, 359
PmlI	CACGTG	2 cut(s)	337, 359
PpsI	GAGTC	2 cut(s)	197, 361
Ppu21I	YACGTR	2 cut(s)	337, 359
Psp6I	CCWGG	4 cut(s)	232, 551, 1293, 1303
PspCI	CACGTG	2 cut(s)	337, 359
PspFI	CCCAGC	2 cut(s)	796, 1308
PspGI	CCWGG	4 cut(s)	232, 551, 1293, 1303
PspN4I	GGNNCC	8 cut(s)	131, 238, 323, 460, 486, 528, 537, 549
PspOMI	GGGCCC	1 cut(s)	484
PspPI	GGNCC	9 cut(s)	130, 140, 322, 474, 484, 485, 493, 851, 1175
RruI	TCGCGA	1 cut(s)	41
RsaI	GTAC	2 cut(s)	1169, 1248
RsaNI	GTAC	2 cut(s)	1168, 1247
SacII	CCGCGG	2 cut(s)	136, 253
SaqAI	TTAA	1 cut(s)	996
Sau3AI	GATC	3 cut(s)	294, 1162, 1273
Sau96I	GGNCC	9 cut(s)	130, 140, 322, 474, 484, 485, 493, 851, 1175
SchI	GAGTC	2 cut(s)	197, 362
SduI	GDGCHC	5 cut(s)	488, 529, 540, 552, 804
SfaNI	GCATC	4 cut(s)	403, 916, 928, 1033
SfiI	GGCCNNNNNGGCC	1 cut(s)	138
Sfr303I	CCGCGG	2 cut(s)	136, 253
SgrBI	CCGCGG	2 cut(s)	136, 253
SinI	GGWCC	1 cut(s)	1175
SmaI	CCCGGG	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	1049
SmoI	CTYRAG	1 cut(s)	1049
Sse9I	AATT	4 cut(s)	563, 952, 1086, 1155
TaiI	ACGT	2 cut(s)	339, 361
TaqI	TCGA	2 cut(s)	936, 1161
TasI	AATT	4 cut(s)	563, 952, 1086, 1155
TatI	WGTACW	1 cut(s)	1167
TfiI	GAWTC	7 cut(s)	24, 209, 371, 424, 511, 865, 1253
Tru1I	TTAA	1 cut(s)	996
Tru9I	TTAA	1 cut(s)	996
TscAI	CASTG	1 cut(s)	1276
TseFI	GTSAC	2 cut(s)	332, 354
TseI	GCWGC	2 cut(s)	340, 607
Tsp45I	GTSAC	2 cut(s)	332, 354
TspDTI	ATGAA	4 cut(s)	878, 1032, 1073, 1324
TspGWI	ACGGA	2 cut(s)	900, 1364
TspMI	CCCGGG	1 cut(s)	570
TspRI	CASTG	1 cut(s)	1276
Van91I	CCANNNNNTGG	2 cut(s)	502, 1336
VpaK11BI	GGWCC	1 cut(s)	1175
XagI	CCTNNNNNAGG	1 cut(s)	231
XapI	RAATTY	1 cut(s)	1086
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1301
XmaI	CCCGGG	1 cut(s)	570
XmnI	GAANNNNTTC	2 cut(s)	1064, 1137
Zsp2I	ATGCAT	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.