Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005382

Physical Location & Seq

Genomic Coordinates Forward (+)

20458952 .. 20460647

Gene Structure 1696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAATGTGTTGTGTCGAGTGTTCACTTCGTCAAGAGTCTTATCATCAAACGTTACGTTCTCGTTTTCTCAAATTCCAAACAATACCAAGAAACCTCTACTTGAAAAGAGAAGATTATCGCCGCGTGTGTGCCTAAGAGCGATGGCGTCTGAGAAACAAAAACAACATGCACAACCTGGCAAAGAACATGTCATGGAATCAAGCCCACAATTCTCTAGCTCAGATTACCAACCTTCCAACAAGCTTCGTGGTAAGGTGGCGTTGATAACTGGTGGAGACTCTGGGATTGGTCGAGCCGTGGGATACTGTTTTGCATCCGAAGGAGCTACTGTGGCTTTCACTTACGTGAAGGGTCAAGAAGAAAAAGATGCACAAGAGACCCTACAAATGTTGAAGGAGGTCAAAACCTCGGACTCCAAGGAACCTATCGCCATTCCAACGGATTTAGGATTTGACGAAAACTGCAAAAGGGTCGTTGATGAGGTCGTTAATGCTTTTGGCCGCATCGATGTTTTGATCAATAACGCAGCAGAGCAGTACGAGAGCAGCACAATCGAAGAGATTGATGAGCCTAGGCTTGAGCGAGTCTTCCGTACAAACATCTTTTCTTACTTCTTTCTCACAAGGCATGCGTTGAAGCATATGAAGGAAGGAAGCAGCATTATCAACACCACTTCGGTGAATGCCTACAAGGGAAACGCTTCACTTCTCGACTACACCGCTACAAAAGGAGCGATTGTGGCGTTTACTCGAGGACTTGCACTTCAGCTAGCTGAGAAAGGAATCCGTGTCAATGGTGTGGCTCCTGGTCCAATATGGACACCCCTTATCCCAGCATCATTCAATGAGGAGAAGATTAAGAATTTTGGGTCTGAGGTTCCGATGAAAAGAGCGGGTCAGCCAATTGAAGTGGCACCATCCTATGTTTTCTTGGCGTGTAACCACTGCTCTTCTTACTTCACTGGTCAAGTTCTTCACCCTAATGGAGGAGCTGTGGTAAATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004033 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008106 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0016614 GO:0016616 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

335

Amino Acids

36.76

Weight (kDa)

8.78

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	81 - 286	1e-10	SDR-like rossmann domain
adh_short	PF00106	87 - 281	1e-46	short chain dehydrogenase
KR	PF08659	89 - 253	3e-07	KR domain
adh_short_C2	PF13561	95 - 332	5.6e-53	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54870 AT1G54870 AT3G05260
fragaria_vesca	FvH4_6g05651 FvH4_6g05660
malus_domestica	MD04G1206800.v1.1 MD12G1220600.v1.1
prunus_persica	Prupe.6G327400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454511 RchiOBHm_Chr3g0454521
rosa_laevigata	RLG00000025436 RLG00000025438 RLG00000035543
rosa_multiflora	Rmu_sc0007209.1_g000002 Rmu_sc0026738.1_g000004
rosa_roxburghii	Rroxscaffold_6G00424990 Rroxscaffold_6G00425010
rosa_rugosa	Rorug03G0000100 Rorug03G0000100
rosa_samantha	Rh3AG059400 Rh3AG059600 Rh3BG061500 Rh3BG061700 Rh3CG060300 Rh3CG060500 Rh3DG061200 Rh3DG061400
rosa_wichuraiana	Rw3G004610 Rw3G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	913
AccBSI	CCGCTC	1 cut(s)	893
AccII	CGCG	1 cut(s)	124
AciI	CCGC	4 cut(s)	122, 502, 720, 893
AclI	AACGTT	1 cut(s)	51
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	2 cut(s)	72, 862
AcuI	CTGAAG	1 cut(s)	749
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	2 cut(s)	539, 595
AfiI	CCNNNNNNNGG	1 cut(s)	986
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	5 cut(s)	104, 394, 637, 844, 908
AjnI	CCWGG	2 cut(s)	175, 805
AleI	CACNNNNGTG	2 cut(s)	344, 677
AluBI	AGCT	6 cut(s)	219, 244, 326, 769, 773, 992
AluI	AGCT	6 cut(s)	219, 244, 326, 769, 773, 992
Alw26I	GTCTC	2 cut(s)	270, 371
Ama87I	CYCGRG	1 cut(s)	750
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	3 cut(s)	527, 546, 657
ApoI	RAATTY	2 cut(s)	72, 862
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspA2I	CCTAGG	1 cut(s)	572
AspS9I	GGNCC	1 cut(s)	809
AsuHPI	GGTGA	2 cut(s)	691, 968
AsuNHI	GCTAGC	1 cut(s)	769
AvaI	CYCGRG	1 cut(s)	750
AvaII	GGWCC	1 cut(s)	809
AvrII	CCTAGG	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	913
BbsI	GAAGAC	1 cut(s)	580
BbvI	GCAGC	3 cut(s)	539, 558, 669
BccI	CCATC	2 cut(s)	136, 925
BceAI	ACGGC	1 cut(s)	281
BcgI	CGANNNNNNTGC	4 cut(s)	454, 488, 535, 569
BciT130I	CCWGG	2 cut(s)	177, 807
BciVI	GTATCC	1 cut(s)	296
BclI	TGATCA	1 cut(s)	516
BcoDI	GTCTC	2 cut(s)	270, 371
BfaI	CTAG	3 cut(s)	216, 573, 770
BfuI	GTATCC	1 cut(s)	296
BisI	GCNGC	5 cut(s)	122, 502, 528, 547, 658
BlnI	CCTAGG	1 cut(s)	572
BlsI	GCNGC	5 cut(s)	123, 503, 529, 548, 659
Bme1390I	CCNGG	2 cut(s)	177, 807
Bme18I	GGWCC	1 cut(s)	809
BmeT110I	CYCGRG	1 cut(s)	750
BmgT120I	GGNCC	1 cut(s)	809
BmiI	GGNNCC	4 cut(s)	423, 804, 879, 915
BmrFI	CCNGG	2 cut(s)	177, 807
BmsI	GCATC	4 cut(s)	323, 358, 513, 845
BmtI	GCTAGC	1 cut(s)	773
BpiI	GAAGAC	1 cut(s)	580
BpuEI	CTTGAG	1 cut(s)	599
Bsa29I	ATCGAT	1 cut(s)	507
BsaAI	YACGTR	1 cut(s)	346
BsaHI	GRCGYC	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	4 cut(s)	297, 408, 417, 572
BsaXI	ACNNNNNCTCC	7 cut(s)	315, 345, 723, 753, 978, 981, 1008
Bsc4I	CCNNNNNNNGG	1 cut(s)	986
Bse1I	ACTGG	2 cut(s)	274, 967
BseBI	CCWGG	2 cut(s)	177, 807
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	4 cut(s)	297, 408, 417, 572
BseGI	GGATG	2 cut(s)	314, 917
BseLI	CCNNNNNNNGG	1 cut(s)	986
BseMII	CTCAG	4 cut(s)	141, 234, 765, 864
BseNI	ACTGG	2 cut(s)	274, 967
BseRI	GAGGAG	2 cut(s)	863, 1002
BseXI	GCAGC	3 cut(s)	539, 558, 669
BseYI	CCCAGC	1 cut(s)	832
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	501
BshNI	GGYRCC	1 cut(s)	913
BshVI	ATCGAT	1 cut(s)	507
BsiHKCI	CYCGRG	1 cut(s)	750
BslI	CCNNNNNNNGG	1 cut(s)	986
BsmAI	GTCTC	2 cut(s)	270, 371
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	1 cut(s)	501
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	750
Bsp143I	GATC	1 cut(s)	516
BspACI	CCGC	4 cut(s)	122, 502, 720, 893
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	4 cut(s)	142, 233, 766, 865
BspDI	ATCGAT	1 cut(s)	507
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	4 cut(s)	423, 804, 879, 915
BspOI	GCTAGC	1 cut(s)	773
BspQI	GCTCTTC	1 cut(s)	955
BspT107I	GGYRCC	1 cut(s)	913
BspTNI	GGTCTC	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	893
BsrI	ACTGG	2 cut(s)	274, 967
BssECI	CCNNGG	4 cut(s)	297, 408, 417, 572
BssMI	GATC	1 cut(s)	516
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	2 cut(s)	417, 572
Bst2UI	CCWGG	2 cut(s)	177, 807
Bst4CI	ACNGT	2 cut(s)	308, 331
Bst6I	CTCTTC	2 cut(s)	552, 955
BstACI	GRCGYC	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	630, 771
BstDEI	CTNAG	5 cut(s)	134, 150, 220, 774, 873
BstDSI	CCRYGG	1 cut(s)	297
BstENI	CCTNNNNNAGG	1 cut(s)	984
BstF5I	GGATG	2 cut(s)	314, 917
BstFNI	CGCG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	519
BstMAI	GTCTC	2 cut(s)	270, 371
BstMBI	GATC	1 cut(s)	516
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 740
BstNI	CCWGG	2 cut(s)	177, 807
BstNSI	RCATGY	3 cut(s)	170, 191, 632
BstSCI	CCNGG	2 cut(s)	175, 805
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	3 cut(s)	539, 558, 669
BstV2I	GAAGAC	1 cut(s)	580
Bsu15I	ATCGAT	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	501
BsuTUI	ATCGAT	1 cut(s)	507
BtgI	CCRYGG	1 cut(s)	297
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	314, 917
BtsI	GCAGTG	1 cut(s)	943
BtsIMutI	CAGTG	2 cut(s)	943, 960
Cac8I	GCNNGC	2 cut(s)	630, 771
Cfr13I	GGNCC	1 cut(s)	809
ClaI	ATCGAT	1 cut(s)	507
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	538, 594
CspCI	CAANNNNNGTGG	4 cut(s)	229, 264, 891, 926
CviAII	CATG	4 cut(s)	167, 188, 193, 629
CviQI	GTAC	2 cut(s)	538, 594
DdeI	CTNAG	5 cut(s)	134, 150, 220, 774, 873
DpnI	GATC	1 cut(s)	518
DpnII	GATC	1 cut(s)	516
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	2 cut(s)	552, 955
EarI	CTCTTC	2 cut(s)	552, 955
Eco130I	CCWWGG	2 cut(s)	417, 572
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	809
Eco57I	CTGAAG	1 cut(s)	749
Eco88I	CYCGRG	1 cut(s)	750
EcoNI	CCTNNNNNAGG	1 cut(s)	984
EcoRII	CCWGG	2 cut(s)	175, 805
EcoT14I	CCWWGG	2 cut(s)	417, 572
ErhI	CCWWGG	2 cut(s)	417, 572
FaeI	CATG	4 cut(s)	170, 191, 196, 632
FaiI	YATR	8 cut(s)	168, 189, 194, 630, 642, 644, 817, 924
FatI	CATG	4 cut(s)	166, 187, 192, 628
FauI	CCCGC	1 cut(s)	886
FauNDI	CATATG	1 cut(s)	642
FbaI	TGATCA	1 cut(s)	516
Fnu4HI	GCNGC	5 cut(s)	122, 502, 528, 547, 658
FokI	GGATG	2 cut(s)	301, 904
Fsp4HI	GCNGC	5 cut(s)	122, 502, 528, 547, 658
FspBI	CTAG	3 cut(s)	216, 573, 770
GluI	GCNGC	5 cut(s)	122, 502, 528, 547, 658
GsaI	CCCAGC	1 cut(s)	836
HaeIII	GGCC	1 cut(s)	501
HgaI	GACGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	4 cut(s)	170, 191, 196, 632
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	6 cut(s)	36, 197, 278, 413, 585, 783
HphI	GGTGA	2 cut(s)	691, 968
Hpy166II	GTNNAC	2 cut(s)	24, 747
Hpy188I	TCNGA	6 cut(s)	151, 223, 319, 412, 874, 882
Hpy188III	TCNNGA	3 cut(s)	33, 356, 710
Hpy8I	GTNNAC	2 cut(s)	24, 747
HpyAV	CCTTC	6 cut(s)	243, 314, 343, 388, 640, 644
HpyCH4III	ACNGT	2 cut(s)	308, 331
HpyCH4IV	ACGT	3 cut(s)	51, 56, 345
HpyCH4V	TGCA	5 cut(s)	170, 314, 371, 465, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 740
HpyF3I	CTNAG	5 cut(s)	134, 150, 220, 774, 873
HpySE526I	ACGT	3 cut(s)	51, 56, 345
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	4 cut(s)	170, 191, 196, 632
Ksp22I	TGATCA	1 cut(s)	516
Kzo9I	GATC	1 cut(s)	516
LguI	GCTCTTC	1 cut(s)	955
LmnI	GCTCC	4 cut(s)	323, 731, 808, 989
LpnPI	CCDG	8 cut(s)	162, 189, 255, 267, 792, 819, 846, 948
Lsp1109I	GCAGC	3 cut(s)	539, 558, 669
LweI	GCATC	4 cut(s)	323, 358, 513, 845
MaeI	CTAG	3 cut(s)	216, 573, 770
MaeII	ACGT	3 cut(s)	51, 56, 345
MaeIII	GTNAC	2 cut(s)	52, 938
MalI	GATC	1 cut(s)	518
MbiI	CCGCTC	1 cut(s)	893
MboI	GATC	1 cut(s)	516
MboII	GAAGA	7 cut(s)	123, 371, 569, 580, 865, 942, 965
MfeI	CAATTG	1 cut(s)	903
MluCI	AATT	4 cut(s)	72, 209, 862, 903
MlyI	GAGTC	4 cut(s)	45, 272, 407, 594
MmeI	TCCRAC	2 cut(s)	261, 461
MnlI	CCTC	8 cut(s)	105, 391, 418, 475, 746, 841, 868, 980
MroXI	GAANNNNTTC	1 cut(s)	700
MseI	TTAA	2 cut(s)	489, 858
MslI	CAYNNNNRTG	3 cut(s)	344, 677, 981
MspR9I	CCNGG	2 cut(s)	177, 807
MunI	CAATTG	1 cut(s)	903
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	2 cut(s)	177, 807
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	332, 740
NdeI	CATATG	1 cut(s)	642
NdeII	GATC	1 cut(s)	516
NheI	GCTAGC	1 cut(s)	769
NlaIII	CATG	4 cut(s)	170, 191, 196, 632
NlaIV	GGNNCC	4 cut(s)	423, 804, 879, 915
NspI	RCATGY	3 cut(s)	170, 191, 632
OliI	CACNNNNGTG	2 cut(s)	344, 677
PaeI	GCATGC	1 cut(s)	632
PaeR7I	CTCGAG	1 cut(s)	750
PciI	ACATGT	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	955
PctI	GAATGC	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	700
PfeI	GAWTC	2 cut(s)	197, 783
PkrI	GCNGC	5 cut(s)	123, 503, 529, 548, 659
PleI	GAGTC	4 cut(s)	44, 272, 407, 593
PpsI	GAGTC	4 cut(s)	44, 272, 407, 593
Ppu21I	YACGTR	1 cut(s)	346
PscI	ACATGT	1 cut(s)	187
Psp1406I	AACGTT	1 cut(s)	51
Psp6I	CCWGG	2 cut(s)	175, 805
PspFI	CCCAGC	1 cut(s)	832
PspGI	CCWGG	2 cut(s)	175, 805
PspN4I	GGNNCC	4 cut(s)	423, 804, 879, 915
PspPI	GGNCC	1 cut(s)	809
PspXI	VCTCGAGB	1 cut(s)	750
RsaI	GTAC	2 cut(s)	539, 595
RsaNI	GTAC	2 cut(s)	538, 594
RseI	CAYNNNNRTG	3 cut(s)	344, 677, 981
SapI	GCTCTTC	1 cut(s)	955
SaqAI	TTAA	2 cut(s)	489, 858
SatI	GCNGC	5 cut(s)	122, 502, 528, 547, 658
Sau3AI	GATC	1 cut(s)	516
Sau96I	GGNCC	1 cut(s)	809
SchI	GAGTC	4 cut(s)	45, 272, 407, 594
ScrFI	CCNGG	2 cut(s)	177, 807
SfaNI	GCATC	4 cut(s)	323, 358, 513, 845
Sfr274I	CTCGAG	1 cut(s)	750
SinI	GGWCC	1 cut(s)	809
SlaI	CTCGAG	1 cut(s)	750
SmiMI	CAYNNNNRTG	3 cut(s)	344, 677, 981
SmlI	CTYRAG	2 cut(s)	578, 750
SmoI	CTYRAG	2 cut(s)	578, 750
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	4 cut(s)	72, 209, 862, 903
SsiI	CCGC	4 cut(s)	122, 502, 720, 893
SspMI	CTAG	3 cut(s)	216, 573, 770
StyD4I	CCNGG	2 cut(s)	175, 805
StyI	CCWWGG	2 cut(s)	417, 572
TaaI	ACNGT	2 cut(s)	308, 331
TaiI	ACGT	3 cut(s)	54, 59, 348
TaqI	TCGA	6 cut(s)	16, 292, 507, 555, 711, 751
TasI	AATT	4 cut(s)	72, 209, 862, 903
TauI	GCSGC	2 cut(s)	124, 504
TfiI	GAWTC	2 cut(s)	197, 783
Tru1I	TTAA	2 cut(s)	489, 858
Tru9I	TTAA	2 cut(s)	489, 858
TscAI	CASTG	2 cut(s)	950, 967
TseI	GCWGC	3 cut(s)	527, 546, 657
TspDTI	ATGAA	3 cut(s)	17, 659, 899
TspGWI	ACGGA	3 cut(s)	455, 581, 776
TspRI	CASTG	2 cut(s)	950, 967
VpaK11BI	GGWCC	1 cut(s)	809
XagI	CCTNNNNNAGG	1 cut(s)	984
XapI	RAATTY	2 cut(s)	72, 862
XceI	RCATGY	3 cut(s)	170, 191, 632
XhoI	CTCGAG	1 cut(s)	750
XmaJI	CCTAGG	1 cut(s)	572
XmnI	GAANNNNTTC	1 cut(s)	700
XspI	CTAG	3 cut(s)	216, 573, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.