Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005382

Physical Location & Seq

Genomic Coordinates Forward (+)

28717624 .. 28719088

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G327400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTTCAGGTGGTAAACAGCAATTCCCACCTCAAAAACAAGAGACTCAGCCTGGGAAAGAGCATGCCATGGACCCCACCCCTCAGTTCACAAACCCAGATTACAAACCCTCCAATAAGCTCCAAGGGAAAGTAGCGCTAGTGACAGGTGGTGACTCTGGGATAGGGCGAGCTGTGTGCCATCTCTTCGCTCAAGAGGGTGCAACTGTGGCCTTCACATATGTGAAGGAGCAGGAGGACAAGGACGCACGTGACACAATGCAAATGATCAAGCAGGCCAAGACTTCTGATGCCAAAGACCCCATGGCACTAGCCGCTGATCTGGGTTATGATGAAAACTGCAAGAAGGTCGTTGATGAGGTGGCCAAAGCCTATGGACGCATTGATATTCTGGTTAACAATGCTGCCGAGCAGTACAAGGCAAGCTCAGTTGAAGATATTGATGAACCCCGTTTGGAGAGGGTGTTCAGGACCAACATATTTTCTTATTTCTTCGTGACCAGGCATGTTTTGAAGCACATGAAAGAAGGTGGCTCCCTAATCTGCACAACATCAGTGGTGGCCTACAAAGGAAATGATAAGCTGCTTGATTATACTGCAACAAAGGGTGCCATTGTGTCCTTCATTAGAGGACTTGCACTTCATCTAGTAGGCAAAGGCATACGTGTCAACGGTGTGGCGCCTGGACCGATCTGGACCCCGTTGATCCCCTCATGTTTCGATGAGGAAGAGACTGCACAGTTTGGCTCTGAAGTGCCAATGCAGCGAGCTGGGCAGCCGTTTGAGGTTGGCCCGTCCTACGTCTTCCTTGCTTCCAATGCTTTCTCTTCATACTATACTGGCCAAGTTTTCCATCCTAATGGTGGGGTTATTGTGAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

295

Amino Acids

32.07

Weight (kDa)

6.1

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54870 AT1G54870 AT3G05260
fragaria_vesca	FvH4_6g05651 FvH4_6g05660
malus_domestica	MD04G1206800.v1.1 MD12G1220600.v1.1
prunus_persica	Prupe.6G327400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454511 RchiOBHm_Chr3g0454521
rosa_laevigata	RLG00000025436 RLG00000025438 RLG00000035543
rosa_multiflora	Rmu_sc0007209.1_g000002 Rmu_sc0026738.1_g000004
rosa_roxburghii	Rroxscaffold_6G00424990 Rroxscaffold_6G00425010
rosa_rugosa	Rorug03G0000100 Rorug03G0000100
rosa_samantha	Rh3AG059400 Rh3AG059600 Rh3BG061500 Rh3BG061700 Rh3CG060300 Rh3CG060500 Rh3DG061200 Rh3DG061400
rosa_wichuraiana	Rw3G004610 Rw3G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	608, 679
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	1 cut(s)	700
AcoI	YGGCCR	2 cut(s)	363, 841
AcuI	CTGAAG	1 cut(s)	771
AcvI	CACGTG	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	680
AfaI	GTAC	1 cut(s)	416
AfeI	AGCGCT	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	863
AflIII	ACRYGT	1 cut(s)	664
AgsI	TTSAA	2 cut(s)	434, 514
AjnI	CCWGG	3 cut(s)	52, 500, 682
AleI	CACNNNNGTG	1 cut(s)	221
AloI	GAACNNNNNNTCC	2 cut(s)	449, 481
AluBI	AGCT	5 cut(s)	121, 173, 426, 583, 770
AluI	AGCT	5 cut(s)	121, 173, 426, 583, 770
Alw26I	GTCTC	2 cut(s)	38, 725
AlwI	GGATC	1 cut(s)	700
Aor51HI	AGCGCT	1 cut(s)	138
AoxI	GGCC	6 cut(s)	210, 276, 363, 561, 790, 841
ApeKI	GCWGC	4 cut(s)	404, 583, 763, 775
AspLEI	GCGC	2 cut(s)	139, 682
AspS9I	GGNCC	5 cut(s)	73, 471, 686, 696, 791
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	4 cut(s)	73, 471, 686, 696
BalI	TGGCCA	2 cut(s)	365, 843
BanI	GGYRCC	2 cut(s)	608, 679
BbrPI	CACGTG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	796
BbvI	GCAGC	4 cut(s)	391, 570, 775, 787
BccI	CCATC	2 cut(s)	189, 861
BceAI	ACGGC	1 cut(s)	763
BcgI	CGANNNNNNTGC	4 cut(s)	159, 193, 331, 365
BciT130I	CCWGG	3 cut(s)	54, 502, 684
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	38, 725
BfaI	CTAG	3 cut(s)	140, 311, 647
BfoI	RGCGCY	2 cut(s)	140, 683
BisI	GCNGC	5 cut(s)	315, 405, 584, 764, 776
BlsI	GCNGC	5 cut(s)	316, 406, 585, 765, 777
Bme1390I	CCNGG	3 cut(s)	54, 502, 684
Bme18I	GGWCC	4 cut(s)	73, 471, 686, 696
BmgT120I	GGNCC	5 cut(s)	73, 471, 686, 696, 791
BmiI	GGNNCC	5 cut(s)	75, 535, 610, 681, 698
BmrFI	CCNGG	3 cut(s)	54, 502, 684
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	796
BpuEI	CTTGAG	1 cut(s)	177
BsaAI	YACGTR	2 cut(s)	251, 665
BsaHI	GRCGYC	1 cut(s)	680
BsaJI	CCNNGG	4 cut(s)	53, 69, 124, 303
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 449, 479
Bsc4I	CCNNNNNNNGG	1 cut(s)	863
Bse1I	ACTGG	1 cut(s)	844
BseBI	CCWGG	3 cut(s)	54, 502, 684
BseDI	CCNNGG	4 cut(s)	53, 69, 124, 303
BseGI	GGATG	1 cut(s)	853
BseLI	CCNNNNNNNGG	1 cut(s)	863
BseMII	CTCAG	3 cut(s)	62, 98, 441
BseNI	ACTGG	1 cut(s)	844
BseXI	GCAGC	4 cut(s)	391, 570, 775, 787
BseYI	CCCAGC	1 cut(s)	770
BsgI	GTGCAG	2 cut(s)	529, 720
BshFI	GGCC	6 cut(s)	212, 278, 365, 563, 792, 843
BshNI	GGYRCC	2 cut(s)	608, 679
BslI	CCNNNNNNNGG	1 cut(s)	863
BsmAI	GTCTC	2 cut(s)	38, 725
BsmI	GAATGC	1 cut(s)	883
BsnI	GGCC	6 cut(s)	212, 278, 365, 563, 792, 843
Bsp143I	GATC	4 cut(s)	267, 319, 690, 705
Bsp19I	CCATGG	2 cut(s)	69, 303
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	6 cut(s)	212, 278, 365, 563, 792, 843
BspCNI	CTCAG	3 cut(s)	61, 97, 440
BspLI	GGNNCC	5 cut(s)	75, 535, 610, 681, 698
BspPI	GGATC	1 cut(s)	700
BspT107I	GGYRCC	2 cut(s)	608, 679
BsrI	ACTGG	1 cut(s)	844
BssECI	CCNNGG	4 cut(s)	53, 69, 124, 303
BssMI	GATC	4 cut(s)	267, 319, 690, 705
BssNI	GRCGYC	1 cut(s)	680
BssT1I	CCWWGG	3 cut(s)	69, 124, 303
Bst2UI	CCWGG	3 cut(s)	54, 502, 684
Bst4CI	ACNGT	3 cut(s)	208, 674, 741
Bst6I	CTCTTC	3 cut(s)	191, 723, 832
BstACI	GRCGYC	1 cut(s)	680
BstBAI	YACGTR	2 cut(s)	251, 665
BstC8I	GCNNGC	5 cut(s)	66, 171, 276, 424, 768
BstDEI	CTNAG	3 cut(s)	48, 84, 427
BstDSI	CCRYGG	2 cut(s)	69, 303
BstF5I	GGATG	1 cut(s)	853
BstH2I	RGCGCY	2 cut(s)	140, 683
BstHHI	GCGC	2 cut(s)	139, 682
BstKTI	GATC	4 cut(s)	270, 322, 693, 708
BstMAI	GTCTC	2 cut(s)	38, 725
BstMBI	GATC	4 cut(s)	267, 319, 690, 705
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 314, 763, 772, 818
BstNI	CCWGG	3 cut(s)	54, 502, 684
BstNSI	RCATGY	2 cut(s)	68, 509
BstSCI	CCNGG	3 cut(s)	52, 500, 682
BstV1I	GCAGC	4 cut(s)	391, 570, 775, 787
BstV2I	GAAGAC	1 cut(s)	796
BstXI	CCANNNNNNTGG	1 cut(s)	860
BsuRI	GGCC	6 cut(s)	212, 278, 365, 563, 792, 843
BtgI	CCRYGG	2 cut(s)	69, 303
BtsCI	GGATG	1 cut(s)	853
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	5 cut(s)	66, 171, 276, 424, 768
CfoI	GCGC	2 cut(s)	139, 682
Cfr13I	GGNCC	5 cut(s)	73, 471, 686, 696, 791
CseI	GACGC	2 cut(s)	254, 387
Csp6I	GTAC	1 cut(s)	415
CspCI	CAANNNNNGTGG	2 cut(s)	537, 572
CviAII	CATG	6 cut(s)	65, 70, 304, 506, 520, 714
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	3 cut(s)	48, 84, 427
DinI	GGCGCC	1 cut(s)	681
DpnI	GATC	4 cut(s)	269, 321, 692, 707
DpnII	GATC	4 cut(s)	267, 319, 690, 705
EaeI	YGGCCR	2 cut(s)	363, 841
Eam1104I	CTCTTC	3 cut(s)	191, 723, 832
EarI	CTCTTC	3 cut(s)	191, 723, 832
Eco130I	CCWWGG	3 cut(s)	69, 124, 303
Eco47I	GGWCC	4 cut(s)	73, 471, 686, 696
Eco47III	AGCGCT	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	771
Eco72I	CACGTG	1 cut(s)	251
EcoRII	CCWGG	3 cut(s)	52, 500, 682
EcoT14I	CCWWGG	3 cut(s)	69, 124, 303
EgeI	GGCGCC	1 cut(s)	681
EheI	GGCGCC	1 cut(s)	681
ErhI	CCWWGG	3 cut(s)	69, 124, 303
FaeI	CATG	6 cut(s)	68, 73, 307, 509, 523, 717
FatI	CATG	6 cut(s)	64, 69, 303, 505, 519, 713
FauNDI	CATATG	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	5 cut(s)	315, 405, 584, 764, 776
FokI	GGATG	1 cut(s)	840
Fsp4HI	GCNGC	5 cut(s)	315, 405, 584, 764, 776
FspBI	CTAG	3 cut(s)	140, 311, 647
GlaI	GCGC	2 cut(s)	138, 681
GluI	GCNGC	5 cut(s)	315, 405, 584, 764, 776
GsaI	CCCAGC	1 cut(s)	774
HaeII	RGCGCY	2 cut(s)	140, 683
HaeIII	GGCC	6 cut(s)	212, 278, 365, 563, 792, 843
HgaI	GACGC	2 cut(s)	254, 387
HhaI	GCGC	2 cut(s)	139, 682
Hin1I	GRCGYC	1 cut(s)	680
Hin1II	CATG	6 cut(s)	68, 73, 307, 509, 523, 717
Hin6I	GCGC	2 cut(s)	137, 680
HinP1I	GCGC	2 cut(s)	137, 680
HincII	GTYRAC	2 cut(s)	397, 670
HindII	GTYRAC	2 cut(s)	397, 670
HinfI	GANTC	2 cut(s)	46, 155
HpaI	GTTAAC	1 cut(s)	397
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	4 cut(s)	17, 90, 397, 670
Hpy188I	TCNGA	2 cut(s)	289, 751
Hpy188III	TCNNGA	4 cut(s)	194, 469, 496, 694
Hpy8I	GTNNAC	4 cut(s)	17, 90, 397, 670
HpyAV	CCTTC	5 cut(s)	220, 223, 340, 521, 631
HpyCH4III	ACNGT	3 cut(s)	208, 674, 741
HpyCH4IV	ACGT	3 cut(s)	250, 664, 801
HpyCH4V	TGCA	8 cut(s)	203, 262, 342, 546, 599, 638, 737, 763
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 314, 763, 772, 818
HpyF3I	CTNAG	3 cut(s)	48, 84, 427
HpySE526I	ACGT	3 cut(s)	250, 664, 801
Hsp92I	GRCGYC	1 cut(s)	680
Hsp92II	CATG	6 cut(s)	68, 73, 307, 509, 523, 717
HspAI	GCGC	2 cut(s)	137, 680
KasI	GGCGCC	1 cut(s)	679
Ksp22I	TGATCA	1 cut(s)	267
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	267, 319, 690, 705
LmnI	GCTCC	3 cut(s)	126, 229, 539
Lsp1109I	GCAGC	4 cut(s)	391, 570, 775, 787
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	3 cut(s)	140, 311, 647
MaeII	ACGT	3 cut(s)	250, 664, 801
MaeIII	GTNAC	4 cut(s)	142, 152, 251, 496
MalI	GATC	4 cut(s)	269, 321, 692, 707
MboI	GATC	4 cut(s)	267, 319, 690, 705
MboII	GAAGA	6 cut(s)	178, 446, 484, 740, 796, 819
MlsI	TGGCCA	2 cut(s)	365, 843
MluCI	AATT	1 cut(s)	23
MluNI	TGGCCA	2 cut(s)	365, 843
Mly113I	GGCGCC	1 cut(s)	680
MlyI	GAGTC	2 cut(s)	40, 149
Mox20I	TGGCCA	2 cut(s)	365, 843
MscI	TGGCCA	2 cut(s)	365, 843
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	2 cut(s)	221, 858
Msp20I	TGGCCA	2 cut(s)	365, 843
MspA1I	CMGCKG	1 cut(s)	317
MspR9I	CCNGG	3 cut(s)	54, 502, 684
Mva1269I	GAATGC	1 cut(s)	883
MvaI	CCWGG	3 cut(s)	54, 502, 684
MwoI	GCNNNNNNNGC	5 cut(s)	209, 314, 763, 772, 818
NarI	GGCGCC	1 cut(s)	680
NcoI	CCATGG	2 cut(s)	69, 303
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	4 cut(s)	267, 319, 690, 705
NlaIII	CATG	6 cut(s)	68, 73, 307, 509, 523, 717
NlaIV	GGNNCC	5 cut(s)	75, 535, 610, 681, 698
NmeAIII	GCCGAG	1 cut(s)	433
NmuCI	GTSAC	4 cut(s)	142, 152, 251, 496
NspI	RCATGY	2 cut(s)	68, 509
OliI	CACNNNNGTG	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	68
PctI	GAATGC	1 cut(s)	883
PkrI	GCNGC	5 cut(s)	316, 406, 585, 765, 777
PleI	GAGTC	2 cut(s)	40, 149
PluTI	GGCGCC	1 cut(s)	683
PmaCI	CACGTG	1 cut(s)	251
PmlI	CACGTG	1 cut(s)	251
PpsI	GAGTC	2 cut(s)	40, 149
Ppu21I	YACGTR	2 cut(s)	251, 665
Psp6I	CCWGG	3 cut(s)	52, 500, 682
PspCI	CACGTG	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	770
PspGI	CCWGG	3 cut(s)	52, 500, 682
PspN4I	GGNNCC	5 cut(s)	75, 535, 610, 681, 698
PspPI	GGNCC	5 cut(s)	73, 471, 686, 696, 791
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	2 cut(s)	221, 858
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	5 cut(s)	315, 405, 584, 764, 776
Sau3AI	GATC	4 cut(s)	267, 319, 690, 705
Sau96I	GGNCC	5 cut(s)	73, 471, 686, 696, 791
SchI	GAGTC	2 cut(s)	40, 149
ScrFI	CCNGG	3 cut(s)	54, 502, 684
SfaNI	GCATC	1 cut(s)	280
SfoI	GGCGCC	1 cut(s)	681
SinI	GGWCC	4 cut(s)	73, 471, 686, 696
SmiMI	CAYNNNNRTG	2 cut(s)	221, 858
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	1 cut(s)	315
SspDI	GGCGCC	1 cut(s)	679
SspMI	CTAG	3 cut(s)	140, 311, 647
StyD4I	CCNGG	3 cut(s)	52, 500, 682
StyI	CCWWGG	3 cut(s)	69, 124, 303
TaaI	ACNGT	3 cut(s)	208, 674, 741
TaiI	ACGT	3 cut(s)	253, 667, 804
TaqI	TCGA	1 cut(s)	720
TaqII	GACCGA	1 cut(s)	703
TasI	AATT	1 cut(s)	23
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	1 cut(s)	561
TseFI	GTSAC	4 cut(s)	142, 152, 251, 496
TseI	GCWGC	4 cut(s)	404, 583, 763, 775
Tsp45I	GTSAC	4 cut(s)	142, 152, 251, 496
TspDTI	ATGAA	6 cut(s)	348, 459, 536, 613, 632, 819
TspRI	CASTG	1 cut(s)	561
VpaK11BI	GGWCC	4 cut(s)	73, 471, 686, 696
XceI	RCATGY	2 cut(s)	68, 509
XcmI	CCANNNNNNNNNTGG	2 cut(s)	301, 860
XspI	CTAG	3 cut(s)	140, 311, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.