Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005382

Physical Location & Seq

Genomic Coordinates Reverse (-)

4627222 .. 4627789

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42153

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCAAGGCATGCTTTGAAGCACATGAAAGAAGGCAGCAATATAATTTGCACAACATGGGTTGTGGCCTACAAAGGAAATGAGAAGCTGCTTGATTATACAGCAACCAAGGGTGCGATTGTGGCATTCGTGAGAGGATTGGCACTTGAGCTAGTGAACAAAGGCATCCGGGTCAATGGTGTAGCTCCTGGACCAATATGGACCCCGTTGAGTCCGGCATCTTTTGATGAGGAGGAGACTGCAAAGTATGGCTCTGAAGTGCCAATGCAGCGACCTGGTCAGCCCTGTGAGGTTGCGCCTGCCTATGTCTTCCTTGCTTCCAATGCTTTCTCTTCTTACATAACCGGCCAAGTCATCCATCCTAATGGTGGGGTTATAGTAAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

129

Amino Acids

13.8

Weight (kDa)

7.79

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	1 - 125	2.3e-31	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	1 - 77	2e-13	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54870 AT1G54870 AT3G05260
fragaria_vesca	FvH4_6g05651 FvH4_6g05660
malus_domestica	MD04G1206800.v1.1 MD12G1220600.v1.1
prunus_persica	Prupe.6G327400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454511 RchiOBHm_Chr3g0454521
rosa_laevigata	RLG00000025436 RLG00000025438 RLG00000035543
rosa_multiflora	Rmu_sc0007209.1_g000002 Rmu_sc0026738.1_g000004
rosa_roxburghii	Rroxscaffold_6G00424990 Rroxscaffold_6G00425010
rosa_rugosa	Rorug03G0000100 Rorug03G0000100
rosa_samantha	Rh3AG059400 Rh3AG059600 Rh3BG061500 Rh3BG061700 Rh3CG060300 Rh3CG060500 Rh3DG061200 Rh3DG061400
rosa_wichuraiana	Rw3G004610 Rw3G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	187, 274
AluBI	AGCT	3 cut(s)	88, 151, 185
AluI	AGCT	3 cut(s)	88, 151, 185
Alw26I	GTCTC	1 cut(s)	230
AoxI	GGCC	2 cut(s)	66, 346
ApeKI	GCWGC	3 cut(s)	36, 88, 268
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	191, 201
AsuC2I	CCSGG	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	191, 201
BbsI	GAAGAC	1 cut(s)	301
BbvI	GCAGC	3 cut(s)	48, 75, 280
BccI	CCATC	1 cut(s)	366
BciT130I	CCWGG	2 cut(s)	189, 276
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	152
BisI	GCNGC	3 cut(s)	37, 89, 269
BlsI	GCNGC	3 cut(s)	38, 90, 270
Bme1390I	CCNGG	3 cut(s)	170, 189, 276
Bme18I	GGWCC	2 cut(s)	191, 201
BmgT120I	GGNCC	2 cut(s)	191, 201
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	3 cut(s)	170, 189, 276
BmsI	GCATC	2 cut(s)	174, 227
BpiI	GAAGAC	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	1 cut(s)	344
BseBI	CCWGG	2 cut(s)	189, 276
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	3 cut(s)	165, 354, 358
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseRI	GAGGAG	2 cut(s)	245, 248
BseXI	GCAGC	3 cut(s)	48, 75, 280
BshFI	GGCC	2 cut(s)	68, 348
BsiSI	CCGG	3 cut(s)	169, 215, 345
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	68, 348
BspANI	GGCC	2 cut(s)	68, 348
BspLI	GGNNCC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	189, 276
Bst6I	CTCTTC	1 cut(s)	337
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	12, 300
BstF5I	GGATG	3 cut(s)	165, 354, 358
BstHHI	GCGC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 122, 268, 323
BstNI	CCWGG	2 cut(s)	189, 276
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	3 cut(s)	168, 187, 274
BstV1I	GCAGC	3 cut(s)	48, 75, 280
BstV2I	GAAGAC	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	68, 348
BtsCI	GGATG	3 cut(s)	165, 354, 358
Cac8I	GCNNGC	2 cut(s)	12, 300
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	191, 201
CsiI	ACCWGGT	1 cut(s)	274
CviAII	CATG	3 cut(s)	11, 25, 57
CviJI	RGCY	7 cut(s)	68, 88, 151, 185, 252, 283, 348
CviKI_1	RGCY	7 cut(s)	68, 88, 151, 185, 252, 283, 348
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	191, 201
Eco57I	CTGAAG	1 cut(s)	276
EcoRII	CCWGG	2 cut(s)	187, 274
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	14, 28, 60
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	3 cut(s)	10, 24, 56
Fnu4HI	GCNGC	3 cut(s)	37, 89, 269
FokI	GGATG	3 cut(s)	152, 341, 345
Fsp4HI	GCNGC	3 cut(s)	37, 89, 269
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	3 cut(s)	37, 89, 269
HaeIII	GGCC	2 cut(s)	68, 348
HapII	CCGG	3 cut(s)	169, 215, 345
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	3 cut(s)	14, 28, 60
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	3 cut(s)	169, 215, 345
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	130, 387
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	26
HpyCH4V	TGCA	3 cut(s)	51, 242, 268
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 122, 268, 323
Hsp92II	CATG	3 cut(s)	14, 28, 60
HspAI	GCGC	1 cut(s)	296
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	9 cut(s)	174, 182, 201, 228, 261, 288, 298, 312, 358
Lsp1109I	GCAGC	3 cut(s)	48, 75, 280
LweI	GCATC	2 cut(s)	174, 227
MabI	ACCWGGT	1 cut(s)	274
MaeI	CTAG	1 cut(s)	152
MboII	GAAGA	2 cut(s)	301, 324
MluCI	AATT	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	4 cut(s)	128, 223, 226, 283
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	3 cut(s)	169, 215, 345
MspR9I	CCNGG	3 cut(s)	170, 189, 276
Mva1269I	GAATGC	1 cut(s)	125
MvaI	CCWGG	2 cut(s)	189, 276
MwoI	GCNNNNNNNGC	4 cut(s)	11, 122, 268, 323
NciI	CCSGG	1 cut(s)	170
NlaIII	CATG	3 cut(s)	14, 28, 60
NlaIV	GGNNCC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	125
PflFI	GACNNNGTC	1 cut(s)	276
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	3 cut(s)	38, 90, 270
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	187, 274
PspGI	CCWGG	2 cut(s)	187, 274
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	2 cut(s)	191, 201
PsyI	GACNNNGTC	1 cut(s)	276
RseI	CAYNNNNRTG	1 cut(s)	363
SatI	GCNGC	3 cut(s)	37, 89, 269
Sau96I	GGNCC	2 cut(s)	191, 201
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	3 cut(s)	170, 189, 276
SetI	ASST	5 cut(s)	90, 153, 187, 277, 294
SexAI	ACCWGGT	1 cut(s)	274
SfaNI	GCATC	2 cut(s)	174, 227
SinI	GGWCC	2 cut(s)	191, 201
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	1 cut(s)	45
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	3 cut(s)	168, 187, 274
StyI	CCWWGG	1 cut(s)	108
TasI	AATT	1 cut(s)	45
TseI	GCWGC	3 cut(s)	36, 88, 268
TspDTI	ATGAA	1 cut(s)	41
Tth111I	GACNNNGTC	1 cut(s)	276
VpaK11BI	GGWCC	2 cut(s)	191, 201
XceI	RCATGY	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.