Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005382

Physical Location & Seq

Genomic Coordinates Reverse (-)

3224744 .. 3226650

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05651.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCTTCTGGTGGCAATCAGAATTTTCCTCCTCAAAAGCAAGCATCTCAGCCTGGCAAAGAGCATGCCATGAACCCTAACCCTCAGTACTCAAACCCGGATTACAAGCCCTCCAATAAATTCCAAGGGAAGGTAGCACTAGTGACTGGTGGAGACTCTGGGATAGGACGAGCAGTGTGCTATTGCTTTGCTCAGGAGGGTGCAACAGTGGCCTTCACATATGTGGAGGGTCAGGAGGACAAGGATGCACGCGACACGCTTGAAATGATCAAGCAGGTGAAAACTCCTGATTCCAAGGATCCAATTGCAGTTGCAGCTGATCTTGGTTTCGATGAGAATTGCAAGAGGGTCGTAGACGAGGTGACAAAAGCATATGGATGCATTGATATTCTGGTTAACAATGCAGCCGAGCAGTACAAGGACAGCTCGGTGGCAGAGATTGATGAGCCTCGTCTTGAAAGAGTGTTTAGAACCAATATATTTTCTTACTTTTTCGTGACAAGGCATGCATTGAAGCACATGAAAGAAGGCAGCAGCATAATTTGCACAACATCAGTTAATGCGTACAAGGGAAATCAGAAGCTGCTTGATTATACATCAACCAAGGGAGCTATTGTGGCATTCGTACGAGGGTTGTCACTTGAGCTAGTGAGCAAAGGCATCCGCGTCAATGGTGTAGCTCCTGGACCAATATGGAGTTATGGACTCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

238

Amino Acids

25.91

Weight (kDa)

7.58

Isoelectric Point (pI)

21.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	39 - 230	6.9e-11	SDR-like rossmann domain
adh_short	PF00106	44 - 231	3e-42	short chain dehydrogenase
KR	PF08659	46 - 210	1.9e-07	KR domain
adh_short_C2	PF13561	52 - 232	1.4e-38	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54870 AT1G54870 AT3G05260
fragaria_vesca	FvH4_6g05651 FvH4_6g05660
malus_domestica	MD04G1206800.v1.1 MD12G1220600.v1.1
prunus_persica	Prupe.6G327400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454511 RchiOBHm_Chr3g0454521
rosa_laevigata	RLG00000025436 RLG00000025438 RLG00000035543
rosa_multiflora	Rmu_sc0007209.1_g000002 Rmu_sc0026738.1_g000004
rosa_roxburghii	Rroxscaffold_6G00424990 Rroxscaffold_6G00425010
rosa_rugosa	Rorug03G0000100 Rorug03G0000100
rosa_samantha	Rh3AG059400 Rh3AG059600 Rh3BG061500 Rh3BG061700 Rh3CG060300 Rh3CG060500 Rh3DG061200 Rh3DG061400
rosa_wichuraiana	Rw3G004610 Rw3G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	2 cut(s)	252, 666
AciI	CCGC	1 cut(s)	664
AclWI	GGATC	2 cut(s)	293, 306
AcsI	RAATTY	2 cut(s)	22, 119
AfaI	GTAC	4 cut(s)	89, 416, 566, 627
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	263, 458, 514
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	52, 682
AleI	CACNNNNGTG	1 cut(s)	221
AluBI	AGCT	6 cut(s)	317, 426, 583, 611, 646, 680
AluI	AGCT	6 cut(s)	317, 426, 583, 611, 646, 680
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	2 cut(s)	293, 306
AlwNI	CAGNNNCTG	1 cut(s)	583
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	5 cut(s)	314, 404, 531, 534, 583
ApoI	RAATTY	2 cut(s)	22, 119
AspS9I	GGNCC	1 cut(s)	686
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	289, 373
AvaII	GGWCC	1 cut(s)	686
BamHI	GGATCC	1 cut(s)	298
BbvI	GCAGC	5 cut(s)	326, 416, 543, 546, 570
BcgI	CGANNNNNNTGC	4 cut(s)	159, 193, 331, 365
BciT130I	CCWGG	2 cut(s)	54, 684
BclI	TGATCA	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	147
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	2 cut(s)	140, 647
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	5 cut(s)	315, 405, 532, 535, 584
BlsI	GCNGC	5 cut(s)	316, 406, 533, 536, 585
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	3 cut(s)	54, 98, 684
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	686
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	3 cut(s)	54, 98, 684
BmsI	GCATC	4 cut(s)	53, 235, 368, 669
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	98
BsaJI	CCNNGG	3 cut(s)	124, 294, 603
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 600, 630
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	151
BseBI	CCWGG	2 cut(s)	54, 684
BseDI	CCNNGG	3 cut(s)	124, 294, 603
BseGI	GGATG	3 cut(s)	250, 383, 660
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	3 cut(s)	62, 98, 206
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	5 cut(s)	326, 416, 543, 546, 570
Bsh1236I	CGCG	2 cut(s)	252, 666
BshFI	GGCC	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	98
BsiWI	CGTACG	1 cut(s)	625
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	620
BsnI	GGCC	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	267, 298, 319
BspACI	CCGC	1 cut(s)	664
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	3 cut(s)	61, 97, 205
BspFNI	CGCG	2 cut(s)	252, 666
BspLI	GGNNCC	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	2 cut(s)	293, 306
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	3 cut(s)	124, 294, 603
BssMI	GATC	3 cut(s)	267, 298, 319
BssT1I	CCWWGG	3 cut(s)	124, 294, 603
Bst2UI	CCWGG	2 cut(s)	54, 684
Bst4CI	ACNGT	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	543
BstC8I	GCNNGC	4 cut(s)	42, 66, 250, 507
BstDEI	CTNAG	3 cut(s)	48, 84, 192
BstF5I	GGATG	3 cut(s)	250, 383, 660
BstFNI	CGCG	2 cut(s)	252, 666
BstKTI	GATC	3 cut(s)	270, 301, 322
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	3 cut(s)	267, 298, 319
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 314, 543, 617
BstNI	CCWGG	2 cut(s)	54, 684
BstNSI	RCATGY	2 cut(s)	68, 509
BstSCI	CCNGG	3 cut(s)	52, 96, 682
BstUI	CGCG	2 cut(s)	252, 666
BstV1I	GCAGC	5 cut(s)	326, 416, 543, 546, 570
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	3 cut(s)	250, 383, 660
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	180, 213
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	4 cut(s)	42, 66, 250, 507
CaiI	CAGNNNCTG	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	686
CseI	GACGC	1 cut(s)	655
Csp6I	GTAC	4 cut(s)	88, 415, 565, 626
CviAII	CATG	4 cut(s)	65, 70, 506, 520
CviQI	GTAC	4 cut(s)	88, 415, 565, 626
DdeI	CTNAG	3 cut(s)	48, 84, 192
DpnI	GATC	3 cut(s)	269, 300, 321
DpnII	GATC	3 cut(s)	267, 298, 319
Eco130I	CCWWGG	3 cut(s)	124, 294, 603
Eco47I	GGWCC	1 cut(s)	686
EcoRII	CCWGG	2 cut(s)	52, 682
EcoT14I	CCWWGG	3 cut(s)	124, 294, 603
EcoT22I	ATGCAT	2 cut(s)	383, 511
ErhI	CCWWGG	3 cut(s)	124, 294, 603
FaeI	CATG	4 cut(s)	68, 73, 509, 523
FatI	CATG	4 cut(s)	64, 69, 505, 519
FauNDI	CATATG	2 cut(s)	220, 373
FbaI	TGATCA	1 cut(s)	267
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	5 cut(s)	315, 405, 532, 535, 584
FokI	GGATG	3 cut(s)	257, 390, 647
Fsp4HI	GCNGC	5 cut(s)	315, 405, 532, 535, 584
FspBI	CTAG	2 cut(s)	140, 647
GluI	GCNGC	5 cut(s)	315, 405, 532, 535, 584
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	655
Hin1II	CATG	4 cut(s)	68, 73, 509, 523
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	3 cut(s)	155, 290, 705
HpaI	GTTAAC	1 cut(s)	397
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	289, 373
Hpy166II	GTNNAC	2 cut(s)	355, 397
Hpy188I	TCNGA	2 cut(s)	21, 579
Hpy188III	TCNNGA	5 cut(s)	194, 233, 287, 455, 496
Hpy8I	GTNNAC	2 cut(s)	355, 397
HpyAV	CCTTC	3 cut(s)	124, 223, 521
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	9 cut(s)	203, 248, 308, 314, 342, 381, 404, 509, 546
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 314, 543, 617
HpyF3I	CTNAG	3 cut(s)	48, 84, 192
Hsp92II	CATG	4 cut(s)	68, 73, 509, 523
Ksp22I	TGATCA	1 cut(s)	267
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	267, 298, 319
LmnI	GCTCC	2 cut(s)	608, 685
Lsp1109I	GCAGC	5 cut(s)	326, 416, 543, 546, 570
LweI	GCATC	4 cut(s)	53, 235, 368, 669
MaeI	CTAG	2 cut(s)	140, 647
MaeIII	GTNAC	4 cut(s)	142, 361, 496, 636
MalI	GATC	3 cut(s)	269, 300, 321
MboI	GATC	3 cut(s)	267, 298, 319
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	5 cut(s)	22, 119, 303, 337, 540
MlyI	GAGTC	2 cut(s)	149, 699
Mph1103I	ATGCAT	2 cut(s)	383, 511
MseI	TTAA	2 cut(s)	396, 558
MslI	CAYNNNNRTG	2 cut(s)	221, 376
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	3 cut(s)	54, 98, 684
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	2 cut(s)	54, 684
MvnI	CGCG	2 cut(s)	252, 666
MwoI	GCNNNNNNNGC	4 cut(s)	209, 314, 543, 617
NciI	CCSGG	1 cut(s)	98
NdeI	CATATG	2 cut(s)	220, 373
NdeII	GATC	3 cut(s)	267, 298, 319
NlaIII	CATG	4 cut(s)	68, 73, 509, 523
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	1 cut(s)	433
NmuCI	GTSAC	4 cut(s)	142, 361, 496, 636
NsiI	ATGCAT	2 cut(s)	383, 511
NspI	RCATGY	2 cut(s)	68, 509
OliI	CACNNNNGTG	1 cut(s)	221
PaeI	GCATGC	2 cut(s)	68, 509
PaqCI	CACCTGC	1 cut(s)	265
PctI	GAATGC	1 cut(s)	620
PfeI	GAWTC	1 cut(s)	290
Pfl23II	CGTACG	1 cut(s)	625
PfoI	TCCNGGA	1 cut(s)	682
PkrI	GCNGC	5 cut(s)	316, 406, 533, 536, 585
PleI	GAGTC	2 cut(s)	149, 699
PpsI	GAGTC	2 cut(s)	149, 699
Psp6I	CCWGG	2 cut(s)	52, 682
PspGI	CCWGG	2 cut(s)	52, 682
PspLI	CGTACG	1 cut(s)	625
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	686
PstNI	CAGNNNCTG	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	4 cut(s)	89, 416, 566, 627
RsaNI	GTAC	4 cut(s)	88, 415, 565, 626
RseI	CAYNNNNRTG	2 cut(s)	221, 376
SaqAI	TTAA	2 cut(s)	396, 558
SatI	GCNGC	5 cut(s)	315, 405, 532, 535, 584
Sau3AI	GATC	3 cut(s)	267, 298, 319
Sau96I	GGNCC	1 cut(s)	686
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	2 cut(s)	149, 699
ScrFI	CCNGG	3 cut(s)	54, 98, 684
SetI	ASST	9 cut(s)	135, 279, 319, 363, 428, 585, 613, 648, 682
SfaNI	GCATC	4 cut(s)	53, 235, 368, 669
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	2 cut(s)	221, 376
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SpeI	ACTAGT	1 cut(s)	139
SphI	GCATGC	2 cut(s)	68, 509
Sse9I	AATT	5 cut(s)	22, 119, 303, 337, 540
SsiI	CCGC	1 cut(s)	664
SspMI	CTAG	2 cut(s)	140, 647
StyD4I	CCNGG	3 cut(s)	52, 96, 682
StyI	CCWWGG	3 cut(s)	124, 294, 603
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	330
TasI	AATT	5 cut(s)	22, 119, 303, 337, 540
TatI	WGTACW	2 cut(s)	87, 414
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	396, 558
Tru9I	TTAA	2 cut(s)	396, 558
TscAI	CASTG	2 cut(s)	180, 213
TseFI	GTSAC	4 cut(s)	142, 361, 496, 636
TseI	GCWGC	5 cut(s)	314, 404, 531, 534, 583
Tsp45I	GTSAC	4 cut(s)	142, 361, 496, 636
TspDTI	ATGAA	2 cut(s)	86, 536
TspGWI	ACGGA	1 cut(s)	698
TspRI	CASTG	2 cut(s)	180, 213
VpaK11BI	GGWCC	1 cut(s)	686
XapI	RAATTY	2 cut(s)	22, 119
XceI	RCATGY	2 cut(s)	68, 509
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	2 cut(s)	140, 647
ZrmI	AGTACT	1 cut(s)	89
Zsp2I	ATGCAT	2 cut(s)	383, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.